Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012613

Physical Location & Seq

Genomic Coordinates Forward (+)

12267144 .. 12269982

Gene Structure 2839 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17354

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGGGACTTATCTGCCATTTGCAGGGATGGTAATGGTGGAGTGTTTGGATGTGGGAATGACCACACTAAGCAAAGCGGCCATGTCCAGAGGAATGAGTCACTTTGTTTTTGTTGTCTACTCAAATGCTCTTGCCACTCTCATCCTCCTCCCTTCTTCTTTCATAATCCACAGAAATAAGAGACCCCCATTGACCTTCTCCATTCTCTGTAAATTCTTCCTTCTTAGCCTTGCTGGGATAACTATTATGCAGAACTGTGTGTTCACTGGAGTAAGCTACAGCTCTCCCACTCTTGCTTCTGCAATGAGCAATTTGGTCCCGGCTTTCACTTTCTTTCTTGCTGTTATCTTCAGAATGGAAAAGTTAGATTTGAGGAACTCAATAAGCCAGATCAAAATCATGGGCACCCTGGTATCCATATCAGGAGCATTGATTGTCACTCTCTACAAGGGTGCTCCACTTTTTGGCACACCAGTTCAATCAATTCCTGACTCTTCTCCCTCGAACACCTCTTCGTCAACATCAATGAATAATTGGATCATTGGAGGCCTTTTTCTTGCAACAGCTTCTTCATGTCTTGCAATATGGAATACTGCTCAGGCTGCAATTCTTAAAGGATACCCCTCAGAGATGACCATAGTCTCCTTCTATTCCTTATTTGGAACCATTCAGTGTACAATACTTTCTTTGTTTGTTGAAAGGAATCCAAGTGCCTGGACACTGAGGCCTGACATTGAGCTTGCCTCTATCTTCTATTCAGCTATTTGTGGAGGTGTTTTAACATTCTCTGTGCAAACATGGTGCATAAAAAAGAAAGGACCTGTATTTGTGGCTATGTTCAAGCCTTTGGGGATTGCCATTGCTGCTTTGCTAGGCGCTATCTTTCTAGGGGAAGAACTCCATGTTGGAAGTCATCCCTTATTGGAGCAGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

311

Amino Acids

33.64

Weight (kDa)

8.98

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	20 - 147	5e-12	EamA-like transporter family
EamA	PF00892	181 - 302	3e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012613)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05000 FvH4_5g05000 FvH4_5g05000 FvH4_5g05000
malus_domestica	MD06G1178000.v1.1
prunus_persica	Prupe.5G177200_v2.0.a1
pyrus_communis	pycom06g15830
rosa_chinensis	RchiOBHm_Chr7g0194041
rosa_laevigata	RLG00000004222
rosa_multiflora	Rmu_co8179194.1_g000001 Rmu_sc0022386.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261600
rosa_rugosa	Rorug07G0013300 Rorug07G0013400
rosa_samantha	Rh7BG141100 Rh7BG141200 Rh7CG144600 Rh7DG141800
rosa_wichuraiana	Rw7G012000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	404
AccB7I	CCANNNNNTGG	1 cut(s)	464
AccI	GTMKAC	1 cut(s)	117
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	1 cut(s)	545
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	334
AfaI	GTAC	1 cut(s)	676
AfiI	CCNNNNNNNGG	2 cut(s)	23, 464
AgsI	TTSAA	3 cut(s)	479, 698, 841
AjnI	CCWGG	2 cut(s)	408, 713
AjuI	GAANNNNNNNTTGG	2 cut(s)	888, 920
AluBI	AGCT	5 cut(s)	276, 282, 566, 739, 761
AluI	AGCT	5 cut(s)	276, 282, 566, 739, 761
Alw21I	GWGCWC	1 cut(s)	457
Alw26I	GTCTC	2 cut(s)	175, 646
AlwI	GGATC	1 cut(s)	545
AoxI	GGCC	3 cut(s)	78, 547, 725
ApeKI	GCWGC	2 cut(s)	602, 863
ApoI	RAATTY	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	878
AspS9I	GGNCC	2 cut(s)	316, 818
AsuC2I	CCSGG	1 cut(s)	320
AvaII	GGWCC	2 cut(s)	316, 818
BaeGI	GKGCMC	1 cut(s)	407
BaeI	ACNNNNGTAYC	2 cut(s)	396, 429
BanI	GGYRCC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	457
BbvI	GCAGC	2 cut(s)	589, 850
BccI	CCATC	1 cut(s)	22
BciT130I	CCWGG	2 cut(s)	410, 715
BciVI	GTATCC	2 cut(s)	424, 611
BcnI	CCSGG	1 cut(s)	320
BcoDI	GTCTC	2 cut(s)	175, 646
BfaI	CTAG	2 cut(s)	872, 887
BfmI	CTRYAG	1 cut(s)	277
BfoI	RGCGCY	1 cut(s)	879
BfuI	GTATCC	2 cut(s)	424, 611
BisI	GCNGC	3 cut(s)	78, 603, 864
BlsI	GCNGC	3 cut(s)	79, 604, 865
Bme1390I	CCNGG	3 cut(s)	320, 410, 715
Bme18I	GGWCC	2 cut(s)	316, 818
BmgT120I	GGNCC	2 cut(s)	316, 818
BmiI	GGNNCC	3 cut(s)	318, 406, 664
BmrFI	CCNGG	3 cut(s)	320, 410, 715
BoxI	GACNNNNGTC	1 cut(s)	638
BplI	GAGNNNNNCTC	2 cut(s)	728, 760
BpmI	CTGGAG	1 cut(s)	288
Bpu10I	CCTNAGC	1 cut(s)	597
BpuMI	CCSGG	1 cut(s)	320
BsaBI	GATNNNNATC	1 cut(s)	395
BsaI	GGTCTC	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	408
BsaXI	ACNNNNNCTCC	1 cut(s)	917
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 464
Bse1I	ACTGG	2 cut(s)	271, 473
Bse3DI	GCAATG	2 cut(s)	309, 858
Bse8I	GATNNNNATC	1 cut(s)	395
BseBI	CCWGG	2 cut(s)	410, 715
BseDI	CCNNGG	1 cut(s)	408
BseGI	GGATG	4 cut(s)	33, 55, 141, 913
BseJI	GATNNNNATC	1 cut(s)	395
BseLI	CCNNNNNNNGG	2 cut(s)	23, 464
BseMI	GCAATG	2 cut(s)	309, 858
BseMII	CTCAG	3 cut(s)	611, 639, 713
BseNI	ACTGG	2 cut(s)	271, 473
BseRI	GAGGAG	1 cut(s)	137
BseSI	GKGCMC	1 cut(s)	407
BseXI	GCAGC	2 cut(s)	589, 850
BseYI	CCCAGC	1 cut(s)	233
BshFI	GGCC	3 cut(s)	80, 549, 727
BshNI	GGYRCC	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	457
BsiSI	CCGG	1 cut(s)	320
BslFI	GGGAC	2 cut(s)	19, 302
BslI	CCNNNNNNNGG	2 cut(s)	23, 464
BsmAI	GTCTC	2 cut(s)	175, 646
BsmFI	GGGAC	2 cut(s)	19, 302
BsnI	GGCC	3 cut(s)	80, 549, 727
Bso31I	GGTCTC	1 cut(s)	175
Bsp1286I	GDGCHC	2 cut(s)	407, 457
Bsp1407I	TGTACA	1 cut(s)	674
Bsp143I	GATC	2 cut(s)	390, 537
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	3 cut(s)	80, 549, 727
BspCNI	CTCAG	3 cut(s)	610, 638, 714
BspLI	GGNNCC	3 cut(s)	318, 406, 664
BspPI	GGATC	1 cut(s)	545
BspT107I	GGYRCC	1 cut(s)	404
BspTNI	GGTCTC	1 cut(s)	175
BsrDI	GCAATG	2 cut(s)	309, 858
BsrGI	TGTACA	1 cut(s)	674
BsrI	ACTGG	2 cut(s)	271, 473
BssECI	CCNNGG	1 cut(s)	408
BssMI	GATC	2 cut(s)	390, 537
Bst2UI	CCWGG	2 cut(s)	410, 715
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	2 cut(s)	499, 517
BstAUI	TGTACA	1 cut(s)	674
BstC8I	GCNNGC	1 cut(s)	741
BstDEI	CTNAG	5 cut(s)	68, 224, 597, 625, 722
BstF5I	GGATG	4 cut(s)	33, 55, 141, 913
BstH2I	RGCGCY	1 cut(s)	879
BstHHI	GCGC	1 cut(s)	878
BstKTI	GATC	2 cut(s)	393, 540
BstMAI	GTCTC	2 cut(s)	175, 646
BstMBI	GATC	2 cut(s)	390, 537
BstMWI	GCNNNNNNNGC	2 cut(s)	602, 863
BstNI	CCWGG	2 cut(s)	410, 715
BstPAI	GACNNNNGTC	1 cut(s)	638
BstSCI	CCNGG	3 cut(s)	318, 408, 713
BstSFI	CTRYAG	1 cut(s)	277
BstSLI	GKGCMC	1 cut(s)	407
BstV1I	GCAGC	2 cut(s)	589, 850
BstXI	CCANNNNNNTGG	1 cut(s)	714
BsuI	GTATCC	2 cut(s)	424, 611
BsuRI	GGCC	3 cut(s)	80, 549, 727
BtsCI	GGATG	4 cut(s)	33, 55, 141, 913
BtsI	GCAGTG	1 cut(s)	935
BtsIMutI	CAGTG	4 cut(s)	264, 677, 719, 935
Cac8I	GCNNGC	1 cut(s)	741
CfoI	GCGC	1 cut(s)	878
Cfr13I	GGNCC	2 cut(s)	316, 818
Csp6I	GTAC	1 cut(s)	675
CviAII	CATG	5 cut(s)	82, 400, 573, 798, 902
CviQI	GTAC	1 cut(s)	675
DdeI	CTNAG	5 cut(s)	68, 224, 597, 625, 722
DpnI	GATC	2 cut(s)	392, 539
DpnII	GATC	2 cut(s)	390, 537
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	2 cut(s)	499, 517
EarI	CTCTTC	2 cut(s)	499, 517
Eco147I	AGGCCT	2 cut(s)	549, 727
Eco31I	GGTCTC	1 cut(s)	175
Eco47I	GGWCC	2 cut(s)	316, 818
Eco57I	CTGAAG	1 cut(s)	334
EcoO109I	RGGNCCY	1 cut(s)	818
EcoRII	CCWGG	2 cut(s)	408, 713
FaeI	CATG	5 cut(s)	85, 403, 576, 801, 905
FaqI	GGGAC	2 cut(s)	19, 302
FatI	CATG	5 cut(s)	81, 399, 572, 797, 901
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	3 cut(s)	78, 603, 864
FokI	GGATG	4 cut(s)	40, 62, 128, 900
Fsp4HI	GCNGC	3 cut(s)	78, 603, 864
FspBI	CTAG	2 cut(s)	872, 887
GlaI	GCGC	1 cut(s)	877
GluI	GCNGC	3 cut(s)	78, 603, 864
GsaI	CCCAGC	1 cut(s)	237
GsuI	CTGGAG	1 cut(s)	288
HaeII	RGCGCY	1 cut(s)	879
HaeIII	GGCC	3 cut(s)	80, 549, 727
HapII	CCGG	1 cut(s)	320
HhaI	GCGC	1 cut(s)	878
Hin1II	CATG	5 cut(s)	85, 403, 576, 801, 905
Hin6I	GCGC	1 cut(s)	876
HinP1I	GCGC	1 cut(s)	876
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HinfI	GANTC	3 cut(s)	97, 491, 703
HpaII	CCGG	1 cut(s)	320
Hpy166II	GTNNAC	4 cut(s)	118, 264, 519, 675
Hpy188I	TCNGA	2 cut(s)	353, 628
Hpy188III	TCNNGA	3 cut(s)	87, 423, 488
Hpy8I	GTNNAC	4 cut(s)	118, 264, 519, 675
HpyAV	CCTTC	4 cut(s)	162, 205, 230, 655
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4V	TGCA	8 cut(s)	23, 250, 302, 560, 581, 605, 793, 804
HpyF10VI	GCNNNNNNNGC	2 cut(s)	602, 863
HpyF3I	CTNAG	5 cut(s)	68, 224, 597, 625, 722
Hsp92II	CATG	5 cut(s)	85, 403, 576, 801, 905
HspAI	GCGC	1 cut(s)	876
Kzo9I	GATC	2 cut(s)	390, 537
LmnI	GCTCC	3 cut(s)	425, 460, 925
Lsp1109I	GCAGC	2 cut(s)	589, 850
MaeI	CTAG	2 cut(s)	872, 887
MaeIII	GTNAC	2 cut(s)	98, 436
MalI	GATC	2 cut(s)	392, 539
MboI	GATC	2 cut(s)	390, 537
MboII	GAAGA	8 cut(s)	147, 208, 340, 486, 504, 561, 742, 905
MhlI	GDGCHC	2 cut(s)	407, 457
MluCI	AATT	5 cut(s)	212, 310, 483, 532, 606
MlyI	GAGTC	2 cut(s)	106, 485
MmeI	TCCRAC	1 cut(s)	886
MseI	TTAA	2 cut(s)	612, 779
MspI	CCGG	1 cut(s)	320
MspR9I	CCNGG	3 cut(s)	320, 410, 715
MvaI	CCWGG	2 cut(s)	410, 715
MwoI	GCNNNNNNNGC	2 cut(s)	602, 863
NciI	CCSGG	1 cut(s)	320
NdeII	GATC	2 cut(s)	390, 537
NlaIII	CATG	5 cut(s)	85, 403, 576, 801, 905
NlaIV	GGNNCC	3 cut(s)	318, 406, 664
NmuCI	GTSAC	2 cut(s)	98, 436
PceI	AGGCCT	2 cut(s)	549, 727
PfeI	GAWTC	1 cut(s)	703
PflMI	CCANNNNNTGG	1 cut(s)	464
PkrI	GCNGC	3 cut(s)	79, 604, 865
PleI	GAGTC	2 cut(s)	105, 485
PpsI	GAGTC	2 cut(s)	105, 485
PpuMI	RGGWCCY	1 cut(s)	818
PshAI	GACNNNNGTC	1 cut(s)	638
Psp5II	RGGWCCY	1 cut(s)	818
Psp6I	CCWGG	2 cut(s)	408, 713
PspFI	CCCAGC	1 cut(s)	233
PspGI	CCWGG	2 cut(s)	408, 713
PspN4I	GGNNCC	3 cut(s)	318, 406, 664
PspPI	GGNCC	2 cut(s)	316, 818
PspPPI	RGGWCCY	1 cut(s)	818
RsaI	GTAC	1 cut(s)	676
RsaNI	GTAC	1 cut(s)	675
SaqAI	TTAA	2 cut(s)	612, 779
SatI	GCNGC	3 cut(s)	78, 603, 864
Sau3AI	GATC	2 cut(s)	390, 537
Sau96I	GGNCC	2 cut(s)	316, 818
SchI	GAGTC	2 cut(s)	106, 485
ScrFI	CCNGG	3 cut(s)	320, 410, 715
SduI	GDGCHC	2 cut(s)	407, 457
SetI	ASST	9 cut(s)	197, 278, 284, 512, 568, 741, 763, 775, 823
SfcI	CTRYAG	1 cut(s)	277
SinI	GGWCC	2 cut(s)	316, 818
Sse9I	AATT	5 cut(s)	212, 310, 483, 532, 606
SseBI	AGGCCT	2 cut(s)	549, 727
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	2 cut(s)	872, 887
StuI	AGGCCT	2 cut(s)	549, 727
StyD4I	CCNGG	3 cut(s)	318, 408, 713
TaaI	ACNGT	1 cut(s)	257
TaqI	TCGA	1 cut(s)	503
TasI	AATT	5 cut(s)	212, 310, 483, 532, 606
TatI	WGTACW	1 cut(s)	674
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	1 cut(s)	703
Tru1I	TTAA	2 cut(s)	612, 779
Tru9I	TTAA	2 cut(s)	612, 779
TscAI	CASTG	4 cut(s)	271, 677, 726, 935
TseFI	GTSAC	2 cut(s)	98, 436
TseI	GCWGC	2 cut(s)	602, 863
Tsp45I	GTSAC	2 cut(s)	98, 436
TspDTI	ATGAA	3 cut(s)	151, 542, 561
TspRI	CASTG	4 cut(s)	271, 677, 726, 935
Van91I	CCANNNNNTGG	1 cut(s)	464
VpaK11BI	GGWCC	2 cut(s)	316, 818
XapI	RAATTY	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	2 cut(s)	872, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.