Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022386.1

Orthogroup ID

OG0012613

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 725

Gene Structure 725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022386.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 353 bp

atggagacttatctgccatttatagggatggtaatggtggagtgtttggatgtgggaatgaccacactaagcaaagcggccatgtccagaggaatgagtcactttgtttttgttgtctactcaaatgctcttgccactctcatcctcctcccttcttctttcataatccacagaaataagagacccccattgaccttctccattctctgtaaatttttccttcttagccttgctgggataactattatgcagaactgtgtgttcactggagtaagctacagctctcccactcttgcttctgcaatgagcaatttggtcccggctttcactttctttcttgctgttatcttcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

117

Amino Acids

12.86

Weight (kDa)

8.99

Isoelectric Point (pI)

54.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012613)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05000 FvH4_5g05000 FvH4_5g05000 FvH4_5g05000
malus_domestica	MD06G1178000.v1.1
prunus_persica	Prupe.5G177200_v2.0.a1
pyrus_communis	pycom06g15830
rosa_chinensis	RchiOBHm_Chr7g0194041
rosa_laevigata	RLG00000004222
rosa_multiflora	Rmu_co8179194.1_g000001 Rmu_sc0022386.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261600
rosa_rugosa	Rorug07G0013300 Rorug07G0013400
rosa_samantha	Rh7BG141100 Rh7BG141200 Rh7CG144600 Rh7DG141800
rosa_wichuraiana	Rw7G012000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	117
AciI	CCGC	1 cut(s)	77
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	334
AfiI	CCNNNNNNNGG	1 cut(s)	23
AluBI	AGCT	2 cut(s)	276, 282
AluI	AGCT	2 cut(s)	276, 282
Alw26I	GTCTC	1 cut(s)	175
AoxI	GGCC	1 cut(s)	78
ApoI	RAATTY	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	316
AsuC2I	CCSGG	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	316
BccI	CCATC	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	175
BfmI	CTRYAG	1 cut(s)	277
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
Bme1390I	CCNGG	1 cut(s)	320
Bme18I	GGWCC	1 cut(s)	316
BmgT120I	GGNCC	1 cut(s)	316
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	1 cut(s)	320
BpmI	CTGGAG	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	320
BsaI	GGTCTC	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	271
Bse3DI	GCAATG	1 cut(s)	309
BseGI	GGATG	3 cut(s)	33, 55, 141
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMI	GCAATG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	271
BseRI	GAGGAG	1 cut(s)	137
BseYI	CCCAGC	1 cut(s)	233
BshFI	GGCC	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	320
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	80
Bso31I	GGTCTC	1 cut(s)	175
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	80
BspLI	GGNNCC	1 cut(s)	318
BspTNI	GGTCTC	1 cut(s)	175
BsrDI	GCAATG	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	271
Bst4CI	ACNGT	1 cut(s)	257
BstDEI	CTNAG	2 cut(s)	68, 224
BstF5I	GGATG	3 cut(s)	33, 55, 141
BstMAI	GTCTC	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	318
BstSFI	CTRYAG	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	80
BtsCI	GGATG	3 cut(s)	33, 55, 141
BtsIMutI	CAGTG	1 cut(s)	264
Cfr13I	GGNCC	1 cut(s)	316
CviAII	CATG	1 cut(s)	82
CviJI	RGCY	5 cut(s)	80, 228, 276, 282, 323
CviKI_1	RGCY	5 cut(s)	80, 228, 276, 282, 323
DdeI	CTNAG	2 cut(s)	68, 224
EaeI	YGGCCR	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	334
FaeI	CATG	1 cut(s)	85
FaiI	YATR	4 cut(s)	23, 83, 164, 248
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	1 cut(s)	81
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	3 cut(s)	40, 62, 128
Fsp4HI	GCNGC	1 cut(s)	78
GluI	GCNGC	1 cut(s)	78
GsaI	CCCAGC	1 cut(s)	237
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	1 cut(s)	320
Hin1II	CATG	1 cut(s)	85
HinfI	GANTC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	320
Hpy166II	GTNNAC	2 cut(s)	118, 264
Hpy188III	TCNNGA	1 cut(s)	87
Hpy8I	GTNNAC	2 cut(s)	118, 264
HpyAV	CCTTC	3 cut(s)	162, 205, 230
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4V	TGCA	2 cut(s)	250, 302
HpyF3I	CTNAG	2 cut(s)	68, 224
Hsp92II	CATG	1 cut(s)	85
LpnPI	CCDG	4 cut(s)	100, 219, 252, 333
MaeIII	GTNAC	1 cut(s)	98
MboII	GAAGA	2 cut(s)	147, 340
MluCI	AATT	2 cut(s)	212, 310
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	3 cut(s)	83, 155, 158
MspI	CCGG	1 cut(s)	320
MspR9I	CCNGG	1 cut(s)	320
NciI	CCSGG	1 cut(s)	320
NlaIII	CATG	1 cut(s)	85
NlaIV	GGNNCC	1 cut(s)	318
NmuCI	GTSAC	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	79
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	233
PspN4I	GGNNCC	1 cut(s)	318
PspPI	GGNCC	1 cut(s)	316
SatI	GCNGC	1 cut(s)	78
Sau96I	GGNCC	1 cut(s)	316
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	320
SetI	ASST	3 cut(s)	197, 278, 284
SfcI	CTRYAG	1 cut(s)	277
SgeI	CNNG	9 cut(s)	94, 99, 143, 242, 246, 279, 305, 331, 332
SinI	GGWCC	1 cut(s)	316
Sse9I	AATT	2 cut(s)	212, 310
SsiI	CCGC	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	257
TasI	AATT	2 cut(s)	212, 310
TauI	GCSGC	1 cut(s)	80
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	1 cut(s)	151
TspRI	CASTG	1 cut(s)	271
VpaK11BI	GGWCC	1 cut(s)	316
XapI	RAATTY	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.