Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007507

Physical Location & Seq

Genomic Coordinates Forward (+)

3056123 .. 3060101

Gene Structure 3979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g05240.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGAAGAACTTTCAGTGGTATAAGCAGATTTCCAACAATGGCAAACCAGAGAGGAGGCTATCACTGGGAGAATACAAGAGGGCGGTTTCGTGGTCCAAGTACTTGGTTTCTCCAGGGGCTGAGATTAAAGGCGAAGCAGAAGAAGATTGGGGTGCTGACATGTCCCAATTGTACATTGGCTGCAAATTTGCTTCAGGAAGACATAGCAGGATTTACAGAGGAGTTTATAAGCAGAAGGATGTGGCGATTAAGCTTATAAGCCAGCCGGAGGAGGATGCCGACTTGGCGGTTTTGCTTGAGAACCAGTTCAGTTCTGAAGTGGCCTTGCTGTTTCGATTGCAGCACCCGAATATCCTCACTTTTGTTGGAGCTTGTAAGAAGCCTCCTGTGTTCTGCATAATCACCGAGTATTTATCCGGGGGATCGCTAAGAAAGTATCTCCATCAGCAGGAGCCACACTCTCTTCCACTCAGCCTAGTTCTCAAATTAGCCCTTGACATTGCACGCGGGATGCAGTATCTTCATTCTCAAGGTATACTTCATAGGGATCTCAAGTCGGAAAATCTATTGTTAGGAGAGGATATGTCTGTGAAAGTTGCGGATTTCGGTATCTCGTGCTTGGAATCACAGTGTGGCAGTGCAAAAGGGTTTACCGGGACTTACCGTTGGATGGCGCCTGAAATGATCAAAGAGAAACACCATACGAAGAAAGTTGATGTTTACAGTTTTGGCATAGTTCTTTGGGAACTTTTAACAGCGTTGACACCATTTGACAACATGACTCCGGAACAGGCTGCATTTGCAGTGTCACAGAAGAATGCAAGACCTCCTTTGCCGCCCACATGCCCGCCGGCATTCAGTCGTCTCATCAACCGATGTTGGTCGAGTCGTCCAGAAAAGAGACCACATTTCGATGAGATAGTTTACATTTTGGAAGGTTATGCAGAGTCCATTGAGCAAGACCCAGATTTTTTCTCATCCCACATGTCTCCCCAAGATCACACCCTTTTCCTATGCTTTCCAAAGTGGATTGGTCGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

348

Amino Acids

39.54

Weight (kDa)

8.04

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	61 - 271	3.3e-52	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	65 - 267	1.2e-49	Protein kinase domain
Pkinase_fungal	PF17667	166 - 247	6.4e-07	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007507)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05240 FvH4_5g05240 FvH4_5g05240
malus_domestica	MD06G1175200.v1.1 MD14G1182000.v1.1
prunus_persica	Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1
pyrus_communis	pycom06g15600 pycom14g15100
rosa_chinensis	RchiOBHm_Chr7g0193661
rosa_laevigata	RLG00000004253
rosa_multiflora	Rmu_sc0001436.1_g000007
rosa_roxburghii	Rroxscaffold_3G00261930
rosa_rugosa	Rorug07G0011200 Rorug07G0011300 Rorug07G0011300
rosa_samantha	Rh7AG137900 Rh7BG138100 Rh7CG141800 Rh7DG139200
rosa_wichuraiana	Rw7G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	228, 257
AccB1I	GGYRCC	1 cut(s)	673
AccI	GTMKAC	1 cut(s)	535
AccII	CGCG	1 cut(s)	507
AccIII	TCCGGA	1 cut(s)	784
AciI	CCGC	6 cut(s)	83, 287, 507, 599, 836, 848
AclWI	GGATC	2 cut(s)	430, 555
AcsI	RAATTY	1 cut(s)	185
AcuI	CTGAAG	2 cut(s)	177, 336
AcyI	GRCGYC	1 cut(s)	674
AdeI	CACNNNGTG	1 cut(s)	632
AfaI	GTAC	2 cut(s)	101, 173
AfiI	CCNNNNNNNGG	3 cut(s)	268, 448, 670
AflIII	ACRYGT	2 cut(s)	159, 984
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	2 cut(s)	253, 371
AluI	AGCT	2 cut(s)	253, 371
Alw26I	GTCTC	3 cut(s)	869, 895, 993
AlwI	GGATC	2 cut(s)	430, 555
AlwNI	CAGNNNCTG	1 cut(s)	119
Aor13HI	TCCGGA	1 cut(s)	784
AoxI	GGCC	1 cut(s)	321
ApeKI	GCWGC	3 cut(s)	180, 340, 794
ApoI	RAATTY	1 cut(s)	185
Asp700I	GAANNNNTTC	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	676
AspS9I	GGNCC	1 cut(s)	93
AsuC2I	CCSGG	2 cut(s)	418, 655
AsuHPI	GGTGA	1 cut(s)	394
AvaII	GGWCC	1 cut(s)	93
BanI	GGYRCC	1 cut(s)	673
BauI	CACGAG	1 cut(s)	613
BbsI	GAAGAC	1 cut(s)	205
BbvI	GCAGC	3 cut(s)	167, 352, 781
BccI	CCATC	2 cut(s)	450, 664
BciT130I	CCWGG	1 cut(s)	114
BclI	TGATCA	1 cut(s)	684
BcnI	CCSGG	2 cut(s)	418, 655
BcoDI	GTCTC	3 cut(s)	869, 895, 993
BfaI	CTAG	1 cut(s)	476
BfoI	RGCGCY	1 cut(s)	677
BglI	GCCNNNNNGGC	1 cut(s)	284
BisI	GCNGC	4 cut(s)	181, 341, 795, 836
BlsI	GCNGC	4 cut(s)	182, 342, 796, 837
BmcAI	AGTACT	1 cut(s)	101
Bme1390I	CCNGG	3 cut(s)	114, 418, 655
Bme18I	GGWCC	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	2 cut(s)	453, 675
BmrFI	CCNGG	3 cut(s)	114, 418, 655
BmrI	ACTGGG	1 cut(s)	74
BmsI	GCATC	2 cut(s)	265, 501
BmuI	ACTGGG	1 cut(s)	74
BpiI	GAAGAC	1 cut(s)	205
BplI	GAGNNNNNCTC	2 cut(s)	443, 475
BpmI	CTGGAG	1 cut(s)	96
BpuEI	CTTGAG	3 cut(s)	317, 513, 536
BpuMI	CCSGG	2 cut(s)	418, 655
BsaHI	GRCGYC	1 cut(s)	674
BsaI	GGTCTC	1 cut(s)	895
BsaJI	CCNNGG	2 cut(s)	113, 417
BsaWI	WCCGGW	1 cut(s)	784
Bsc4I	CCNNNNNNNGG	3 cut(s)	268, 448, 670
Bse118I	RCCGGY	1 cut(s)	850
Bse1I	ACTGG	2 cut(s)	69, 304
Bse3DI	GCAATG	1 cut(s)	498
BseAI	TCCGGA	1 cut(s)	784
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	113, 417
BseGI	GGATG	5 cut(s)	244, 280, 516, 675, 977
BseLI	CCNNNNNNNGG	3 cut(s)	268, 448, 670
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	2 cut(s)	111, 484
BseNI	ACTGG	2 cut(s)	69, 304
BseRI	GAGGAG	3 cut(s)	67, 234, 284
BseXI	GCAGC	3 cut(s)	167, 352, 781
Bsh1236I	CGCG	1 cut(s)	507
BshFI	GGCC	1 cut(s)	323
BshNI	GGYRCC	1 cut(s)	673
BsiSI	CCGG	5 cut(s)	266, 417, 654, 785, 851
BslFI	GGGAC	2 cut(s)	148, 670
BslI	CCNNNNNNNGG	3 cut(s)	268, 448, 670
BsmAI	GTCTC	3 cut(s)	869, 895, 993
BsmBI	CGTCTC	1 cut(s)	869
BsmFI	GGGAC	2 cut(s)	148, 670
BsmI	GAATGC	2 cut(s)	823, 854
BsnI	GGCC	1 cut(s)	323
Bso31I	GGTCTC	1 cut(s)	895
Bsp13I	TCCGGA	1 cut(s)	784
Bsp1407I	TGTACA	1 cut(s)	171
Bsp143I	GATC	4 cut(s)	422, 547, 684, 997
BspACI	CCGC	6 cut(s)	83, 287, 507, 599, 836, 848
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	2 cut(s)	112, 483
BspEI	TCCGGA	1 cut(s)	784
BspFNI	CGCG	1 cut(s)	507
BspLI	GGNNCC	2 cut(s)	453, 675
BspPI	GGATC	2 cut(s)	430, 555
BspT107I	GGYRCC	1 cut(s)	673
BspTNI	GGTCTC	1 cut(s)	895
BsrDI	GCAATG	1 cut(s)	498
BsrFI	RCCGGY	1 cut(s)	850
BsrGI	TGTACA	1 cut(s)	171
BsrI	ACTGG	2 cut(s)	69, 304
BssAI	RCCGGY	1 cut(s)	850
BssECI	CCNNGG	2 cut(s)	113, 417
BssMI	GATC	4 cut(s)	422, 547, 684, 997
BssNAI	GTATAC	1 cut(s)	536
BssNI	GRCGYC	1 cut(s)	674
BssSI	CACGAG	1 cut(s)	613
Bst1107I	GTATAC	1 cut(s)	536
Bst2BI	CACGAG	1 cut(s)	613
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	3 cut(s)	630, 665, 725
Bst6I	CTCTTC	1 cut(s)	468
BstACI	GRCGYC	1 cut(s)	674
BstAUI	TGTACA	1 cut(s)	171
BstC8I	GCNNGC	4 cut(s)	263, 505, 848, 852
BstDEI	CTNAG	3 cut(s)	120, 428, 470
BstF5I	GGATG	5 cut(s)	244, 280, 516, 675, 977
BstFNI	CGCG	1 cut(s)	507
BstH2I	RGCGCY	1 cut(s)	677
BstHHI	GCGC	1 cut(s)	676
BstKTI	GATC	4 cut(s)	425, 550, 687, 1000
BstMAI	GTCTC	3 cut(s)	869, 895, 993
BstMBI	GATC	4 cut(s)	422, 547, 684, 997
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 800
BstNI	CCWGG	1 cut(s)	114
BstNSI	RCATGY	3 cut(s)	163, 846, 988
BstSCI	CCNGG	3 cut(s)	112, 416, 653
BstUI	CGCG	1 cut(s)	507
BstV1I	GCAGC	3 cut(s)	167, 352, 781
BstV2I	GAAGAC	1 cut(s)	205
BstX2I	RGATCY	1 cut(s)	547
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	547
BstZ17I	GTATAC	1 cut(s)	536
BsuRI	GGCC	1 cut(s)	323
BtsCI	GGATG	5 cut(s)	244, 280, 516, 675, 977
BtsI	GCAGTG	2 cut(s)	643, 810
BtsIMutI	CAGTG	5 cut(s)	20, 62, 635, 643, 810
Cac8I	GCNNGC	4 cut(s)	263, 505, 848, 852
CaiI	CAGNNNCTG	1 cut(s)	119
CfoI	GCGC	1 cut(s)	676
Cfr10I	RCCGGY	1 cut(s)	850
Cfr13I	GGNCC	1 cut(s)	93
Csp6I	GTAC	2 cut(s)	100, 172
CviAII	CATG	4 cut(s)	160, 778, 843, 985
CviQI	GTAC	2 cut(s)	100, 172
DdeI	CTNAG	3 cut(s)	120, 428, 470
DinI	GGCGCC	1 cut(s)	675
DpnI	GATC	4 cut(s)	424, 549, 686, 999
DpnII	GATC	4 cut(s)	422, 547, 684, 997
DraIII	CACNNNGTG	1 cut(s)	632
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
Eco31I	GGTCTC	1 cut(s)	895
Eco47I	GGWCC	1 cut(s)	93
Eco57I	CTGAAG	2 cut(s)	177, 336
EcoRII	CCWGG	1 cut(s)	112
EgeI	GGCGCC	1 cut(s)	675
EheI	GGCGCC	1 cut(s)	675
Esp3I	CGTCTC	1 cut(s)	869
FaeI	CATG	4 cut(s)	163, 781, 846, 988
FalI	AAGNNNNNCTT	4 cut(s)	522, 554, 814, 846
FaqI	GGGAC	2 cut(s)	148, 670
FatI	CATG	4 cut(s)	159, 777, 842, 984
FauI	CCCGC	2 cut(s)	500, 855
FbaI	TGATCA	1 cut(s)	684
FblI	GTMKAC	1 cut(s)	535
Fnu4HI	GCNGC	4 cut(s)	181, 341, 795, 836
FokI	GGATG	5 cut(s)	251, 287, 523, 682, 964
Fsp4HI	GCNGC	4 cut(s)	181, 341, 795, 836
FspBI	CTAG	1 cut(s)	476
GlaI	GCGC	1 cut(s)	675
GluI	GCNGC	4 cut(s)	181, 341, 795, 836
GsuI	CTGGAG	1 cut(s)	96
HaeII	RGCGCY	1 cut(s)	677
HaeIII	GGCC	1 cut(s)	323
HapII	CCGG	5 cut(s)	266, 417, 654, 785, 851
HhaI	GCGC	1 cut(s)	676
Hin1I	GRCGYC	1 cut(s)	674
Hin1II	CATG	4 cut(s)	163, 781, 846, 988
Hin6I	GCGC	1 cut(s)	674
HinP1I	GCGC	1 cut(s)	674
HincII	GTYRAC	1 cut(s)	762
HindII	GTYRAC	1 cut(s)	762
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	4 cut(s)	623, 781, 886, 947
HpaII	CCGG	5 cut(s)	266, 417, 654, 785, 851
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	5 cut(s)	536, 651, 721, 762, 925
Hpy188I	TCNGA	2 cut(s)	316, 559
Hpy188III	TCNNGA	3 cut(s)	195, 785, 893
Hpy8I	GTNNAC	5 cut(s)	536, 651, 721, 762, 925
HpyAV	CCTTC	2 cut(s)	229, 929
HpyCH4III	ACNGT	3 cut(s)	630, 665, 725
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 800
HpyF3I	CTNAG	3 cut(s)	120, 428, 470
Hsp92I	GRCGYC	1 cut(s)	674
Hsp92II	CATG	4 cut(s)	163, 781, 846, 988
HspAI	GCGC	1 cut(s)	674
KasI	GGCGCC	1 cut(s)	673
Kpn2I	TCCGGA	1 cut(s)	784
KroI	GCCGGC	1 cut(s)	850
KroNI	GCCGGC	1 cut(s)	852
Ksp22I	TGATCA	1 cut(s)	684
Kzo9I	GATC	4 cut(s)	422, 547, 684, 997
LmnI	GCTCC	2 cut(s)	368, 451
Lsp1109I	GCAGC	3 cut(s)	167, 352, 781
LweI	GCATC	2 cut(s)	265, 501
MaeI	CTAG	1 cut(s)	476
MaeIII	GTNAC	1 cut(s)	807
MalI	GATC	4 cut(s)	424, 549, 686, 999
MboI	GATC	4 cut(s)	422, 547, 684, 997
MboII	GAAGA	8 cut(s)	16, 152, 155, 210, 455, 512, 718, 826
MfeI	CAATTG	1 cut(s)	167
MflI	RGATCY	1 cut(s)	547
MluCI	AATT	3 cut(s)	167, 185, 485
Mly113I	GGCGCC	1 cut(s)	674
MlyI	GAGTC	3 cut(s)	775, 895, 956
MmeI	TCCRAC	4 cut(s)	57, 346, 537, 647
MroI	TCCGGA	1 cut(s)	784
MroNI	GCCGGC	1 cut(s)	850
MroXI	GAANNNNTTC	1 cut(s)	305
MseI	TTAA	3 cut(s)	126, 249, 752
MslI	CAYNNNNRTG	1 cut(s)	912
MspI	CCGG	5 cut(s)	266, 417, 654, 785, 851
MspR9I	CCNGG	3 cut(s)	114, 418, 655
MunI	CAATTG	1 cut(s)	167
Mva1269I	GAATGC	2 cut(s)	823, 854
MvaI	CCWGG	1 cut(s)	114
MvnI	CGCG	1 cut(s)	507
MwoI	GCNNNNNNNGC	2 cut(s)	284, 800
NaeI	GCCGGC	1 cut(s)	852
NarI	GGCGCC	1 cut(s)	674
NciI	CCSGG	2 cut(s)	418, 655
NdeII	GATC	4 cut(s)	422, 547, 684, 997
NgoMIV	GCCGGC	1 cut(s)	850
NlaIII	CATG	4 cut(s)	163, 781, 846, 988
NlaIV	GGNNCC	2 cut(s)	453, 675
NmuCI	GTSAC	1 cut(s)	807
NspI	RCATGY	3 cut(s)	163, 846, 988
PciI	ACATGT	2 cut(s)	159, 984
PctI	GAATGC	2 cut(s)	823, 854
PdiI	GCCGGC	1 cut(s)	852
PdmI	GAANNNNTTC	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	623
PkrI	GCNGC	4 cut(s)	182, 342, 796, 837
PleI	GAGTC	3 cut(s)	775, 894, 955
PluTI	GGCGCC	1 cut(s)	677
PpsI	GAGTC	3 cut(s)	775, 894, 955
PscI	ACATGT	2 cut(s)	159, 984
PsiI	TTATAA	2 cut(s)	228, 257
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	2 cut(s)	453, 675
PspPI	GGNCC	1 cut(s)	93
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	547
RsaI	GTAC	2 cut(s)	101, 173
RsaNI	GTAC	2 cut(s)	100, 172
RseI	CAYNNNNRTG	1 cut(s)	912
SaqAI	TTAA	3 cut(s)	126, 249, 752
SatI	GCNGC	4 cut(s)	181, 341, 795, 836
Sau3AI	GATC	4 cut(s)	422, 547, 684, 997
Sau96I	GGNCC	1 cut(s)	93
ScaI	AGTACT	1 cut(s)	101
SchI	GAGTC	3 cut(s)	775, 895, 956
ScrFI	CCNGG	3 cut(s)	114, 418, 655
SetI	ASST	5 cut(s)	255, 373, 535, 829, 940
SfaNI	GCATC	2 cut(s)	265, 501
SfoI	GGCGCC	1 cut(s)	675
SinI	GGWCC	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	912
SmlI	CTYRAG	3 cut(s)	296, 528, 551
SmoI	CTYRAG	3 cut(s)	296, 528, 551
Sse9I	AATT	3 cut(s)	167, 185, 485
SsiI	CCGC	6 cut(s)	83, 287, 507, 599, 836, 848
SspDI	GGCGCC	1 cut(s)	673
SspMI	CTAG	1 cut(s)	476
StyD4I	CCNGG	3 cut(s)	112, 416, 653
TaaI	ACNGT	3 cut(s)	630, 665, 725
TaqI	TCGA	3 cut(s)	334, 884, 912
TasI	AATT	3 cut(s)	167, 185, 485
TatI	WGTACW	2 cut(s)	99, 171
TauI	GCSGC	1 cut(s)	838
TfiI	GAWTC	1 cut(s)	623
Tru1I	TTAA	3 cut(s)	126, 249, 752
Tru9I	TTAA	3 cut(s)	126, 249, 752
TscAI	CASTG	5 cut(s)	20, 69, 635, 643, 810
TseFI	GTSAC	1 cut(s)	807
TseI	GCWGC	3 cut(s)	180, 340, 794
Tsp45I	GTSAC	1 cut(s)	807
TspDTI	ATGAA	3 cut(s)	17, 512, 530
TspRI	CASTG	5 cut(s)	20, 69, 635, 643, 810
VpaK11BI	GGWCC	1 cut(s)	93
XapI	RAATTY	1 cut(s)	185
XceI	RCATGY	3 cut(s)	163, 846, 988
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	535
XmnI	GAANNNNTTC	1 cut(s)	305
XspI	CTAG	1 cut(s)	476
ZrmI	AGTACT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.