Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006012

Physical Location & Seq

Genomic Coordinates Forward (+)

940614 .. 944822

Gene Structure 4209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0011300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAGAGGGATTTCTTGGGTTTGAGTTCAAAGAAGACCTGTGTGACTGTGAAAGATGAAGCCAATGATGAACCCAAGAATTCAGTAGTAACAAGAAGCTCAAATTCAGGGATGCAGTGGTCGTTTTCAAACAAGGTTTCTGCACTTCCTCAGTTCCTATCTTTCACGGCTCCTCAAGAAGAGATGTCGAGAAAAGGTGTTCATGACACATCTTCATTCATGACTATATCAACTGCTGATGCTTTTGAATCTAGCCGGAAGTCGTCCTCCGGTGTAATCCAGCACCCAGGAGCCAATCAAATAATCCCTATTTCTTTGAGTACTCATGTTCTCCAAAACAATCTTTTTGGGCAGAAAAACATGGTTGGTTCAACAATAAAACCACAGCGGCTTGCAGGAGTTCCAATTCTAACCCCTGTATCTGCTCTTCCGTCTAAAAGTTCGGTAGTTGGTACCACTGATCTCAGGAATGCATCCAATTCTTCAGGCGTGCCTGCTCAGTTAACAATTTTCTATGCTGGTACTGTGAATGTTTACCATGATATATCTCCTGAGAAGGCCCAGGCTATTATGTTGCTGGCTGGAAATGGATCTTCTCCAGCTCATAGTAAGCTGCCTTCCACAGCTCAAGTGCAAACACCATTCCCTAGTCCTTCCACAGGTGATGGTTTCTTTAGGAACCAGTCTCATATTGCATCATCAATCTCTGGCCTTGCAAGCCCCCTTTCTGTGACGTCACATGCTAGTTCTCGCCCCAGAGGAGCATTTAGTAGCAGCAACGCTTTAACTGTATCAAAACCAGTAGCAACTTCAGTATCTTCAATCAATCACTCAGAGCCTTCAAAAGTGGCAGCACAATCTGTTATGACAAACCTCATTCCAGCAGTACCTGTGCCTCAAGCTCGTAAAGCATCCTTGGCTCGGTTTTTTGAGAAGCGCAAGGAGAGGATGACAAGCACATTGCCATACAATCTCAGCAAAAAATCTCCAGATCGCAGCACACCAGGTTCCGAGGGCGTGACCTTCTCTTTCAACTCTTCTGGTTCCTGTCCTCCCCAAGCCATAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

356

Amino Acids

37.57

Weight (kDa)

9.93

Isoelectric Point (pI)

52.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	165 - 195	2.1e-16	tify domain
Jas_motif	PF09425	299 - 323	1.1e-11	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36330 AT2G36330 AT5G62820
fragaria_vesca	FvH4_5g05230 FvH4_5g05230
malus_domestica	MD06G1175400.v1.1 MD13G1274000.v1.1 MD14G1182200.v1.1
prunus_persica	Prupe.5G174700_v2.0.a1
pyrus_communis	pycom06g15610 pycom14g15110
rosa_chinensis	RchiOBHm_Chr4g0422081 RchiOBHm_Chr7g0193681
rosa_laevigata	RLG00000004252 RLG00000009743
rosa_roxburghii	Rroxscaffold_1G00017200 Rroxscaffold_3G00261910 Rroxscaffold_4G00285190
rosa_rugosa	Rorug07G0011300
rosa_samantha	Rh2AG505200 Rh4BG244400 Rh4CG255200 Rh7AG138000 Rh7BG138200 Rh7CG141900 Rh7DG139300
rosa_wichuraiana	Rw7G011750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	737
Acc65I	GGTACC	1 cut(s)	452
AccB1I	GGYRCC	1 cut(s)	452
AciI	CCGC	1 cut(s)	388
AclWI	GGATC	1 cut(s)	598
AcsI	RAATTY	2 cut(s)	79, 103
AcuI	CTGAAG	2 cut(s)	468, 795
AcyI	GRCGYC	1 cut(s)	734
AfaI	GTAC	4 cut(s)	322, 454, 523, 888
AfiI	CCNNNNNNNGG	2 cut(s)	659, 921
AgsI	TTSAA	7 cut(s)	30, 129, 248, 372, 822, 843, 1033
AjnI	CCWGG	3 cut(s)	286, 561, 1003
AluBI	AGCT	5 cut(s)	99, 602, 613, 626, 902
AluI	AGCT	5 cut(s)	99, 602, 613, 626, 902
Alw26I	GTCTC	1 cut(s)	690
AlwI	GGATC	1 cut(s)	598
AlwNI	CAGNNNCTG	1 cut(s)	890
AoxI	GGCC	2 cut(s)	558, 709
ApeKI	GCWGC	4 cut(s)	613, 774, 851, 996
ApoI	RAATTY	2 cut(s)	79, 103
Asp718I	GGTACC	1 cut(s)	452
AspLEI	GCGC	1 cut(s)	939
AspS9I	GGNCC	1 cut(s)	559
AsuHPI	GGTGA	1 cut(s)	674
BaeI	ACNNNNGTAYC	4 cut(s)	402, 435, 798, 831
BanI	GGYRCC	1 cut(s)	452
BarI	GAAGNNNNNNTAC	4 cut(s)	411, 443, 601, 633
BbsI	GAAGAC	1 cut(s)	41
BbvI	GCAGC	4 cut(s)	600, 786, 863, 1008
BccI	CCATC	1 cut(s)	659
BceAI	ACGGC	1 cut(s)	183
BciT130I	CCWGG	3 cut(s)	288, 563, 1005
BcoDI	GTCTC	1 cut(s)	690
BfaI	CTAG	3 cut(s)	252, 648, 744
BisI	GCNGC	5 cut(s)	389, 614, 775, 852, 997
BlsI	GCNGC	5 cut(s)	390, 615, 776, 853, 998
BmcAI	AGTACT	1 cut(s)	322
Bme1390I	CCNGG	3 cut(s)	288, 563, 1005
BmgT120I	GGNCC	1 cut(s)	559
BmiI	GGNNCC	6 cut(s)	171, 292, 454, 680, 1009, 1045
BmrFI	CCNGG	3 cut(s)	288, 563, 1005
BmsI	GCATC	5 cut(s)	102, 229, 482, 704, 920
BpiI	GAAGAC	1 cut(s)	41
BpmI	CTGGAG	2 cut(s)	582, 972
BpuEI	CTTGAG	3 cut(s)	159, 612, 882
BsaHI	GRCGYC	1 cut(s)	734
BsaJI	CCNNGG	4 cut(s)	286, 561, 915, 1011
BsaWI	WCCGGW	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	2 cut(s)	659, 921
Bse1I	ACTGG	2 cut(s)	682, 800
Bse3DI	GCAATG	1 cut(s)	959
BseBI	CCWGG	3 cut(s)	288, 563, 1005
BseDI	CCNNGG	4 cut(s)	286, 561, 915, 1011
BseGI	GGATG	4 cut(s)	117, 473, 911, 954
BseLI	CCNNNNNNNGG	2 cut(s)	659, 921
BseMI	GCAATG	1 cut(s)	959
BseMII	CTCAG	6 cut(s)	164, 478, 512, 543, 846, 988
BseNI	ACTGG	2 cut(s)	682, 800
BseRI	GAGGAG	2 cut(s)	162, 774
BseXI	GCAGC	4 cut(s)	600, 786, 863, 1008
BsgI	GTGCAG	1 cut(s)	126
BshFI	GGCC	2 cut(s)	560, 711
BshNI	GGYRCC	1 cut(s)	452
BsiSI	CCGG	2 cut(s)	256, 270
BslI	CCNNNNNNNGG	2 cut(s)	659, 921
BsmAI	GTCTC	1 cut(s)	690
BsmI	GAATGC	1 cut(s)	475
BsnI	GGCC	2 cut(s)	560, 711
Bsp143I	GATC	3 cut(s)	460, 590, 991
BspACI	CCGC	1 cut(s)	388
BspANI	GGCC	2 cut(s)	560, 711
BspCNI	CTCAG	6 cut(s)	163, 477, 511, 544, 845, 987
BspHI	TCATGA	2 cut(s)	202, 219
BspLI	GGNNCC	6 cut(s)	171, 292, 454, 680, 1009, 1045
BspPI	GGATC	1 cut(s)	598
BspQI	GCTCTTC	1 cut(s)	432
BspT107I	GGYRCC	1 cut(s)	452
BsrDI	GCAATG	1 cut(s)	959
BsrI	ACTGG	2 cut(s)	682, 800
BssECI	CCNNGG	4 cut(s)	286, 561, 915, 1011
BssMI	GATC	3 cut(s)	460, 590, 991
BssNI	GRCGYC	1 cut(s)	734
BssT1I	CCWWGG	1 cut(s)	915
Bst2UI	CCWGG	3 cut(s)	288, 563, 1005
Bst4CI	ACNGT	3 cut(s)	49, 526, 790
Bst6I	CTCTTC	3 cut(s)	174, 432, 1042
BstACI	GRCGYC	1 cut(s)	734
BstC8I	GCNNGC	5 cut(s)	393, 491, 495, 579, 718
BstDEI	CTNAG	6 cut(s)	150, 464, 498, 552, 832, 974
BstENI	CCTNNNNNAGG	1 cut(s)	657
BstF5I	GGATG	4 cut(s)	117, 473, 911, 954
BstHHI	GCGC	1 cut(s)	939
BstKTI	GATC	3 cut(s)	463, 593, 994
BstMAI	GTCTC	1 cut(s)	690
BstMBI	GATC	3 cut(s)	460, 590, 991
BstMWI	GCNNNNNNNGC	3 cut(s)	717, 908, 917
BstNI	CCWGG	3 cut(s)	288, 563, 1005
BstNSI	RCATGY	1 cut(s)	743
BstSCI	CCNGG	3 cut(s)	286, 561, 1003
BstV1I	GCAGC	4 cut(s)	600, 786, 863, 1008
BstV2I	GAAGAC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	590
BstYI	RGATCY	1 cut(s)	590
BsuRI	GGCC	2 cut(s)	560, 711
BtsCI	GGATG	4 cut(s)	117, 473, 911, 954
BtsI	GCAGTG	1 cut(s)	122
BtsIMutI	CAGTG	2 cut(s)	122, 456
Cac8I	GCNNGC	5 cut(s)	393, 491, 495, 579, 718
CaiI	CAGNNNCTG	1 cut(s)	890
CciI	TCATGA	2 cut(s)	202, 219
CfoI	GCGC	1 cut(s)	939
Cfr13I	GGNCC	1 cut(s)	559
CsiI	ACCWGGT	1 cut(s)	1003
Csp6I	GTAC	4 cut(s)	321, 453, 522, 887
CviAII	CATG	6 cut(s)	203, 220, 326, 361, 539, 740
CviQI	GTAC	4 cut(s)	321, 453, 522, 887
DdeI	CTNAG	6 cut(s)	150, 464, 498, 552, 832, 974
DpnI	GATC	3 cut(s)	462, 592, 993
DpnII	GATC	3 cut(s)	460, 590, 991
Eam1104I	CTCTTC	3 cut(s)	174, 432, 1042
EarI	CTCTTC	3 cut(s)	174, 432, 1042
Eco130I	CCWWGG	1 cut(s)	915
Eco57I	CTGAAG	2 cut(s)	468, 795
EcoNI	CCTNNNNNAGG	1 cut(s)	657
EcoRI	GAATTC	1 cut(s)	79
EcoRII	CCWGG	3 cut(s)	286, 561, 1003
EcoT14I	CCWWGG	1 cut(s)	915
EcoT22I	ATGCAT	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	915
FaeI	CATG	6 cut(s)	206, 223, 329, 364, 542, 743
FatI	CATG	6 cut(s)	202, 219, 325, 360, 538, 739
Fnu4HI	GCNGC	5 cut(s)	389, 614, 775, 852, 997
FokI	GGATG	4 cut(s)	124, 460, 898, 961
Fsp4HI	GCNGC	5 cut(s)	389, 614, 775, 852, 997
FspBI	CTAG	3 cut(s)	252, 648, 744
GlaI	GCGC	1 cut(s)	938
GluI	GCNGC	5 cut(s)	389, 614, 775, 852, 997
GsuI	CTGGAG	2 cut(s)	582, 972
HaeIII	GGCC	2 cut(s)	560, 711
HapII	CCGG	2 cut(s)	256, 270
HhaI	GCGC	1 cut(s)	939
Hin1I	GRCGYC	1 cut(s)	734
Hin1II	CATG	6 cut(s)	206, 223, 329, 364, 542, 743
Hin6I	GCGC	1 cut(s)	937
HinP1I	GCGC	1 cut(s)	937
HincII	GTYRAC	1 cut(s)	504
HindII	GTYRAC	1 cut(s)	504
HinfI	GANTC	1 cut(s)	248
HpaI	GTTAAC	1 cut(s)	504
HpaII	CCGG	2 cut(s)	256, 270
HphI	GGTGA	1 cut(s)	674
Hpy166II	GTNNAC	2 cut(s)	504, 535
Hpy188I	TCNGA	2 cut(s)	835, 1012
Hpy188III	TCNNGA	7 cut(s)	176, 189, 203, 220, 466, 551, 989
Hpy8I	GTNNAC	2 cut(s)	504, 535
HpyAV	CCTTC	5 cut(s)	550, 627, 663, 849, 1033
HpyCH4III	ACNGT	3 cut(s)	49, 526, 790
HpyCH4IV	ACGT	1 cut(s)	734
HpyCH4V	TGCA	7 cut(s)	115, 143, 395, 473, 634, 695, 716
HpyF10VI	GCNNNNNNNGC	3 cut(s)	717, 908, 917
HpyF3I	CTNAG	6 cut(s)	150, 464, 498, 552, 832, 974
HpySE526I	ACGT	1 cut(s)	734
Hsp92I	GRCGYC	1 cut(s)	734
Hsp92II	CATG	6 cut(s)	206, 223, 329, 364, 542, 743
HspAI	GCGC	1 cut(s)	937
KpnI	GGTACC	1 cut(s)	456
KspAI	GTTAAC	1 cut(s)	504
Kzo9I	GATC	3 cut(s)	460, 590, 991
LguI	GCTCTTC	1 cut(s)	432
LmnI	GCTCC	3 cut(s)	175, 290, 761
Lsp1109I	GCAGC	4 cut(s)	600, 786, 863, 1008
LweI	GCATC	5 cut(s)	102, 229, 482, 704, 920
MabI	ACCWGGT	1 cut(s)	1003
MaeI	CTAG	3 cut(s)	252, 648, 744
MaeII	ACGT	1 cut(s)	734
MaeIII	GTNAC	5 cut(s)	43, 88, 730, 735, 1018
MalI	GATC	3 cut(s)	462, 592, 993
MboI	GATC	3 cut(s)	460, 590, 991
MboII	GAAGA	8 cut(s)	46, 191, 204, 419, 474, 585, 810, 1029
MflI	RGATCY	1 cut(s)	590
MluCI	AATT	6 cut(s)	79, 103, 405, 478, 507, 1066
MnlI	CCTC	9 cut(s)	159, 183, 277, 752, 884, 906, 939, 1006, 1062
Mph1103I	ATGCAT	1 cut(s)	475
MseI	TTAA	2 cut(s)	503, 785
MspA1I	CMGCKG	1 cut(s)	388
MspI	CCGG	2 cut(s)	256, 270
MspR9I	CCNGG	3 cut(s)	288, 563, 1005
Mva1269I	GAATGC	1 cut(s)	475
MvaI	CCWGG	3 cut(s)	288, 563, 1005
MwoI	GCNNNNNNNGC	3 cut(s)	717, 908, 917
NdeII	GATC	3 cut(s)	460, 590, 991
NlaIII	CATG	6 cut(s)	206, 223, 329, 364, 542, 743
NlaIV	GGNNCC	6 cut(s)	171, 292, 454, 680, 1009, 1045
NmuCI	GTSAC	4 cut(s)	43, 730, 735, 1018
NsiI	ATGCAT	1 cut(s)	475
NspI	RCATGY	1 cut(s)	743
PagI	TCATGA	2 cut(s)	202, 219
PciSI	GCTCTTC	1 cut(s)	432
PctI	GAATGC	1 cut(s)	475
PfeI	GAWTC	1 cut(s)	248
PkrI	GCNGC	5 cut(s)	390, 615, 776, 853, 998
Psp6I	CCWGG	3 cut(s)	286, 561, 1003
PspGI	CCWGG	3 cut(s)	286, 561, 1003
PspN4I	GGNNCC	6 cut(s)	171, 292, 454, 680, 1009, 1045
PspPI	GGNCC	1 cut(s)	559
PstNI	CAGNNNCTG	1 cut(s)	890
PsuI	RGATCY	1 cut(s)	590
RsaI	GTAC	4 cut(s)	322, 454, 523, 888
RsaNI	GTAC	4 cut(s)	321, 453, 522, 887
SapI	GCTCTTC	1 cut(s)	432
SaqAI	TTAA	2 cut(s)	503, 785
SatI	GCNGC	5 cut(s)	389, 614, 775, 852, 997
Sau3AI	GATC	3 cut(s)	460, 590, 991
Sau96I	GGNCC	1 cut(s)	559
ScaI	AGTACT	1 cut(s)	322
ScrFI	CCNGG	3 cut(s)	288, 563, 1005
SexAI	ACCWGGT	1 cut(s)	1003
SfaNI	GCATC	5 cut(s)	102, 229, 482, 704, 920
SmlI	CTYRAG	3 cut(s)	174, 627, 897
SmoI	CTYRAG	3 cut(s)	174, 627, 897
Sse9I	AATT	6 cut(s)	79, 103, 405, 478, 507, 1066
SsiI	CCGC	1 cut(s)	388
SspMI	CTAG	3 cut(s)	252, 648, 744
StyD4I	CCNGG	3 cut(s)	286, 561, 1003
StyI	CCWWGG	1 cut(s)	915
TaaI	ACNGT	3 cut(s)	49, 526, 790
TaiI	ACGT	1 cut(s)	737
TaqI	TCGA	1 cut(s)	188
TasI	AATT	6 cut(s)	79, 103, 405, 478, 507, 1066
TatI	WGTACW	1 cut(s)	320
TauI	GCSGC	1 cut(s)	391
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	2 cut(s)	503, 785
Tru9I	TTAA	2 cut(s)	503, 785
TscAI	CASTG	2 cut(s)	122, 463
TseFI	GTSAC	4 cut(s)	43, 730, 735, 1018
TseI	GCWGC	4 cut(s)	613, 774, 851, 996
Tsp45I	GTSAC	4 cut(s)	43, 730, 735, 1018
TspDTI	ATGAA	5 cut(s)	72, 84, 191, 204, 208
TspGWI	ACGGA	1 cut(s)	420
TspRI	CASTG	2 cut(s)	122, 463
XagI	CCTNNNNNAGG	1 cut(s)	657
XapI	RAATTY	2 cut(s)	79, 103
XceI	RCATGY	1 cut(s)	743
XspI	CTAG	3 cut(s)	252, 648, 744
ZraI	GACGTC	1 cut(s)	735
ZrmI	AGTACT	1 cut(s)	322
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.