Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006012

Physical Location & Seq

Genomic Coordinates Reverse (-)

57235821 .. 57237285

Gene Structure 1465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009743

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGGGGATGACCAGCAGGCTACTCAGGGTATGTTGACTCTGGTGGATCCGGGATCGACGAGTTCTGAAGGGTTGTCAGAGGGTTGGAGGTTCCCCAGAAAATCAGATGGTGGTTGTGACACAATGGTGTTGGATTCGTTGAGGGAGCCAACCGAGCTGCTAGGGGTGAAGCGTAAGGCTAGGGAGGCTTTGGATCGAGTAGGCAAGCGTGATCATGAGGTGCAAACTTCTGTGGAAAATGATGTAGGTAAGACTCCTACAACTGAACTTGTGGAGGAAGGTTTGGGTTGGGAGATGGAGGACTGCAAGGCGGCCTTGAGGAGAGACCTTGTGGTGAAGACAGCGGCACTAGGATTTCGGGGTAGCGAGTTGTTGCGGTGCTTGATTTCATTCTCGGTTATAGCCGCTAATAAAACTCAGGGCTACTCCTTTGATCACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

148

Amino Acids

16.17

Weight (kDa)

4.99

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36330 AT2G36330 AT5G62820
fragaria_vesca	FvH4_5g05230 FvH4_5g05230
malus_domestica	MD06G1175400.v1.1 MD13G1274000.v1.1 MD14G1182200.v1.1
prunus_persica	Prupe.5G174700_v2.0.a1
pyrus_communis	pycom06g15610 pycom14g15110
rosa_chinensis	RchiOBHm_Chr4g0422081 RchiOBHm_Chr7g0193681
rosa_laevigata	RLG00000004252 RLG00000009743
rosa_roxburghii	Rroxscaffold_1G00017200 Rroxscaffold_3G00261910 Rroxscaffold_4G00285190
rosa_rugosa	Rorug07G0011300
rosa_samantha	Rh2AG505200 Rh4BG244400 Rh4CG255200 Rh7AG138000 Rh7BG138200 Rh7CG141900 Rh7DG139300
rosa_wichuraiana	Rw7G011750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	311, 344, 376, 405
AclWI	GGATC	4 cut(s)	41, 54, 61, 201
AcuI	CTGAAG	1 cut(s)	87
AleI	CACNNNNGTG	1 cut(s)	125
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
Alw26I	GTCTC	1 cut(s)	318
AlwI	GGATC	4 cut(s)	41, 54, 61, 201
AoxI	GGCC	1 cut(s)	312
ApeKI	GCWGC	1 cut(s)	157
AsuC2I	CCSGG	1 cut(s)	51
AsuHPI	GGTGA	2 cut(s)	178, 346
BamHI	GGATCC	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	344
BbvI	GCAGC	1 cut(s)	144
BccI	CCATC	2 cut(s)	101, 289
BclI	TGATCA	2 cut(s)	211, 433
BcnI	CCSGG	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	318
BfaI	CTAG	4 cut(s)	161, 180, 350, 442
BisI	GCNGC	4 cut(s)	158, 312, 345, 405
BlsI	GCNGC	4 cut(s)	159, 313, 346, 406
Bme1390I	CCNGG	1 cut(s)	51
BmiI	GGNNCC	3 cut(s)	48, 92, 147
BmrFI	CCNGG	1 cut(s)	51
BpiI	GAAGAC	1 cut(s)	344
BpuEI	CTTGAG	1 cut(s)	337
BpuMI	CCSGG	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	318
BseGI	GGATG	1 cut(s)	13
BseMII	CTCAG	2 cut(s)	38, 431
BseRI	GAGGAG	1 cut(s)	334
BseXI	GCAGC	1 cut(s)	144
BshFI	GGCC	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	314
Bso31I	GGTCTC	1 cut(s)	318
Bsp143I	GATC	5 cut(s)	46, 53, 193, 211, 433
BspACI	CCGC	4 cut(s)	311, 344, 376, 405
BspANI	GGCC	1 cut(s)	314
BspCNI	CTCAG	2 cut(s)	37, 430
BspHI	TCATGA	1 cut(s)	214
BspLI	GGNNCC	3 cut(s)	48, 92, 147
BspPI	GGATC	4 cut(s)	41, 54, 61, 201
BspTNI	GGTCTC	1 cut(s)	318
BssMI	GATC	5 cut(s)	46, 53, 193, 211, 433
BstC8I	GCNNGC	2 cut(s)	18, 206
BstDEI	CTNAG	2 cut(s)	24, 417
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	5 cut(s)	49, 56, 196, 214, 436
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	5 cut(s)	46, 53, 193, 211, 433
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 185
BstSCI	CCNGG	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	144
BstV2I	GAAGAC	1 cut(s)	344
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	314
BtsCI	GGATG	1 cut(s)	13
Cac8I	GCNNGC	2 cut(s)	18, 206
CciI	TCATGA	1 cut(s)	214
CviAII	CATG	1 cut(s)	215
CviJI	RGCY	8 cut(s)	20, 148, 157, 179, 188, 314, 404, 423
CviKI_1	RGCY	8 cut(s)	20, 148, 157, 179, 188, 314, 404, 423
DdeI	CTNAG	2 cut(s)	24, 417
DpnI	GATC	5 cut(s)	48, 55, 195, 213, 435
DpnII	GATC	5 cut(s)	46, 53, 193, 211, 433
Eco31I	GGTCTC	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	87
FaeI	CATG	1 cut(s)	218
FaiI	YATR	3 cut(s)	32, 216, 401
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FatI	CATG	1 cut(s)	214
FbaI	TGATCA	2 cut(s)	211, 433
Fnu4HI	GCNGC	4 cut(s)	158, 312, 345, 405
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	4 cut(s)	158, 312, 345, 405
FspBI	CTAG	4 cut(s)	161, 180, 350, 442
GluI	GCNGC	4 cut(s)	158, 312, 345, 405
HaeIII	GGCC	1 cut(s)	314
HapII	CCGG	1 cut(s)	50
Hin1II	CATG	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HinfI	GANTC	3 cut(s)	37, 134, 253
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	2 cut(s)	178, 346
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188I	TCNGA	3 cut(s)	67, 79, 106
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	1 cut(s)	36
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	2 cut(s)	62, 272
HpyCH4V	TGCA	2 cut(s)	223, 306
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 185
HpyF3I	CTNAG	2 cut(s)	24, 417
Hsp92II	CATG	1 cut(s)	218
Ksp22I	TGATCA	2 cut(s)	211, 433
Kzo9I	GATC	5 cut(s)	46, 53, 193, 211, 433
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	7 cut(s)	2, 11, 26, 26, 63, 109, 404
Lsp1109I	GCAGC	1 cut(s)	144
MaeI	CTAG	4 cut(s)	161, 180, 350, 442
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	5 cut(s)	48, 55, 195, 213, 435
MboI	GATC	5 cut(s)	46, 53, 193, 211, 433
MboII	GAAGA	1 cut(s)	349
MflI	RGATCY	1 cut(s)	46
MlyI	GAGTC	2 cut(s)	31, 247
MmeI	TCCRAC	2 cut(s)	65, 111
MnlI	CCTC	8 cut(s)	73, 81, 135, 178, 211, 268, 292, 312
MslI	CAYNNNNRTG	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	2 cut(s)	154, 185
NciI	CCSGG	1 cut(s)	51
NdeII	GATC	5 cut(s)	46, 53, 193, 211, 433
NlaIII	CATG	1 cut(s)	218
NlaIV	GGNNCC	3 cut(s)	48, 92, 147
NmuCI	GTSAC	1 cut(s)	116
OliI	CACNNNNGTG	1 cut(s)	125
PagI	TCATGA	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	134
PfoI	TCCNGGA	1 cut(s)	49
PkrI	GCNGC	4 cut(s)	159, 313, 346, 406
PleI	GAGTC	2 cut(s)	31, 247
PpsI	GAGTC	2 cut(s)	31, 247
PspN4I	GGNNCC	3 cut(s)	48, 92, 147
PsuI	RGATCY	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	125
SatI	GCNGC	4 cut(s)	158, 312, 345, 405
Sau3AI	GATC	5 cut(s)	46, 53, 193, 211, 433
SchI	GAGTC	2 cut(s)	31, 247
ScrFI	CCNGG	1 cut(s)	51
SetI	ASST	6 cut(s)	92, 159, 222, 250, 283, 330
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	316
SmoI	CTYRAG	1 cut(s)	316
SsiI	CCGC	4 cut(s)	311, 344, 376, 405
SspMI	CTAG	4 cut(s)	161, 180, 350, 442
StyD4I	CCNGG	1 cut(s)	49
TaqI	TCGA	2 cut(s)	56, 196
TauI	GCSGC	3 cut(s)	314, 347, 407
TfiI	GAWTC	1 cut(s)	134
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	1 cut(s)	378
XspI	CTAG	4 cut(s)	161, 180, 350, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.