Rh7AG138000

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0006012
Physical Location & Seq
Reverse (-)
11058936 .. 11061869
2934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG138000.1

Sequence Viewer

Length: 792 bp
ATGGATGCCCTGAAAGGCAAGCCAGCCATGAAGAAATCCTCCTCCATCAACTCCGAAGACTCCGCCTGCACCGCCGGCTCCCCCCTCCGCTACCTCTCCCCCATGCGATCCGACGCCGGCGACCCCTCCGACTCCCCGCCCTACGCCTCCCCGGAGCTCTCCCCCCAGAAGCAGCCGCCCCCCGACAACTCCAAGGCCATCATGGCCGTCGACAAGTTCACGCAGTACTCCCCCTCCCCCCTCCGCCCTCAGAAACCGCCCGAGAAGGCGCCCTCGCCGATCGTCCTCTACAACAGCAACCGCGCCGCCAGGGAGGACCCCCCGCCGCCCTCGGTGCCCAAGGTGGCCGCTCCTAACGGCGTGCCCTGGCCGGCCGGAGGCGGCGCCGGGGTTGGGAGATCGCGGCGGCCGCCGAGGAGAGCCGATGTGTTGACGACGGCGGCGCTAGGGTTTCGGGTTAGCGAGTTGGTGCTATGTTTGATTTCGTTCTCGGTTATGGCCGCTGATAAAACTCAGGGCTGGAGCGGCGATTCCTTTGATCGCTACAAGGAATACAGGTATTGTTTAGCCGTGACTGTTATTGGATTTGCATATGCTGCTTTTCAAGCATACAATCTATCCTACCAGCTAGTCACCGGGAATTATGTGATCAGGCACCACCTTCGTCACCACTTTGATTTCTTCATGGATCAGGTGAGTCATGCAGCCTATCCATCTTGTTTGGCTCTGTATGATTCTGGTTTTTCCAGAGGAAAAAATCAAACCAAAATCAGTTGGTTCAGTAAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

263

Amino Acids

28.74

Weight (kDa)

9.44

Isoelectric Point (pI)

63.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 143 - 233 1.6e-16 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 268, 334, 383, 654
AccBSI CCGCTC 2 cut(s) 350, 525
AccI GTMKAC 1 cut(s) 210
AccII CGCG 2 cut(s) 303, 403
AclWI GGATC 2 cut(s) 102, 696
AcoI YGGCCR 6 cut(s) 204, 345, 368, 372, 407, 498
AcyI GRCGYC 3 cut(s) 114, 269, 384
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 377, 393
AgsI TTSAA 1 cut(s) 605
AjnI CCWGG 2 cut(s) 308, 365
AluBI AGCT 2 cut(s) 157, 628
AluI AGCT 2 cut(s) 157, 628
Alw21I GWGCWC 1 cut(s) 159
AlwI GGATC 2 cut(s) 102, 696
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 7 cut(s) 195, 204, 345, 368, 372, 407, 498
ApeKI GCWGC 3 cut(s) 172, 596, 704
AspLEI GCGC 4 cut(s) 271, 305, 386, 445
AspS9I GGNCC 1 cut(s) 316
AsuC2I CCSGG 3 cut(s) 152, 388, 637
AsuHPI GGTGA 3 cut(s) 625, 659, 706
AvaI CYCGRG 1 cut(s) 260
AvaII GGWCC 1 cut(s) 316
BaeGI GKGCMC 2 cut(s) 339, 366
BanI GGYRCC 4 cut(s) 268, 334, 383, 654
BanII GRGCYC 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 3 cut(s) 184, 583, 716
BccI CCATC 3 cut(s) 53, 206, 721
BceAI ACGGC 4 cut(s) 191, 373, 453, 554
BcgI CGANNNNNNTGC 2 cut(s) 644, 678
BciT130I CCWGG 2 cut(s) 310, 367
BclI TGATCA 1 cut(s) 648
BcnI CCSGG 3 cut(s) 152, 388, 637
BfaI CTAG 2 cut(s) 446, 629
BfoI RGCGCY 3 cut(s) 272, 387, 446
BglI GCCNNNNNGGC 1 cut(s) 203
BmcAI AGTACT 1 cut(s) 227
Bme1390I CCNGG 5 cut(s) 152, 310, 367, 388, 637
Bme18I GGWCC 1 cut(s) 316
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 316
BmiI GGNNCC 6 cut(s) 79, 270, 318, 336, 385, 656
BmrFI CCNGG 5 cut(s) 152, 310, 367, 388, 637
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 541
BpuMI CCSGG 3 cut(s) 152, 388, 637
BsaHI GRCGYC 3 cut(s) 114, 269, 384
BsaJI CCNNGG 8 cut(s) 150, 192, 309, 330, 339, 365, 387, 413
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 2 cut(s) 377, 393
Bse118I RCCGGY 3 cut(s) 74, 116, 370
BseBI CCWGG 2 cut(s) 310, 367
BseDI CCNNGG 8 cut(s) 150, 192, 309, 330, 339, 365, 387, 413
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 377, 393
BseMII CTCAG 2 cut(s) 263, 527
BseRI GAGGAG 2 cut(s) 31, 430
BseSI GKGCMC 2 cut(s) 339, 366
BseX3I CGGCCG 2 cut(s) 372, 407
BseXI GCAGC 3 cut(s) 184, 583, 716
BsgI GTGCAG 1 cut(s) 52
Bsh1236I CGCG 2 cut(s) 303, 403
Bsh1285I CGRYCG 3 cut(s) 282, 375, 410
BshFI GGCC 7 cut(s) 197, 206, 347, 370, 374, 409, 500
BshNI GGYRCC 4 cut(s) 268, 334, 383, 654
BsiEI CGRYCG 3 cut(s) 282, 375, 410
BsiHKAI GWGCWC 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 7 cut(s) 75, 117, 152, 371, 375, 387, 636
BslI CCNNNNNNNGG 2 cut(s) 377, 393
BsnI GGCC 7 cut(s) 197, 206, 347, 370, 374, 409, 500
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 3 cut(s) 159, 339, 366
Bsp143I GATC 6 cut(s) 107, 279, 398, 538, 648, 688
BspANI GGCC 7 cut(s) 197, 206, 347, 370, 374, 409, 500
BspCNI CTCAG 2 cut(s) 262, 526
BspFNI CGCG 2 cut(s) 303, 403
BspLI GGNNCC 6 cut(s) 79, 270, 318, 336, 385, 656
BspPI GGATC 2 cut(s) 102, 696
BspT107I GGYRCC 4 cut(s) 268, 334, 383, 654
BsrBI CCGCTC 2 cut(s) 350, 525
BsrFI RCCGGY 3 cut(s) 74, 116, 370
BssAI RCCGGY 3 cut(s) 74, 116, 370
BssECI CCNNGG 8 cut(s) 150, 192, 309, 330, 339, 365, 387, 413
BssMI GATC 6 cut(s) 107, 279, 398, 538, 648, 688
BssNI GRCGYC 3 cut(s) 114, 269, 384
BssT1I CCWWGG 2 cut(s) 192, 339
Bst2UI CCWGG 2 cut(s) 310, 367
Bst4CI ACNGT 1 cut(s) 577
BstACI GRCGYC 3 cut(s) 114, 269, 384
BstAPI GCANNNNNTGC 1 cut(s) 596
BstC8I GCNNGC 7 cut(s) 20, 24, 67, 76, 118, 362, 372
BstDEI CTNAG 2 cut(s) 249, 513
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 2 cut(s) 303, 403
BstH2I RGCGCY 3 cut(s) 272, 387, 446
BstHHI GCGC 4 cut(s) 271, 305, 386, 445
BstKTI GATC 6 cut(s) 110, 282, 401, 541, 651, 691
BstMBI GATC 6 cut(s) 107, 279, 398, 538, 648, 688
BstMCI CGRYCG 3 cut(s) 282, 375, 410
BstMWI GCNNNNNNNGC 8 cut(s) 71, 75, 203, 334, 409, 525, 596, 605
BstNI CCWGG 2 cut(s) 310, 367
BstSCI CCNGG 5 cut(s) 150, 308, 365, 386, 635
BstSLI GKGCMC 2 cut(s) 339, 366
BstUI CGCG 2 cut(s) 303, 403
BstV1I GCAGC 3 cut(s) 184, 583, 716
BstV2I GAAGAC 1 cut(s) 63
BstZI CGGCCG 2 cut(s) 372, 407
BsuRI GGCC 7 cut(s) 197, 206, 347, 370, 374, 409, 500
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 7 cut(s) 20, 24, 67, 76, 118, 362, 372
CciNI GCGGCCGC 1 cut(s) 407
CfoI GCGC 4 cut(s) 271, 305, 386, 445
Cfr10I RCCGGY 3 cut(s) 74, 116, 370
Cfr13I GGNCC 1 cut(s) 316
CseI GACGC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 226
CviAII CATG 5 cut(s) 28, 103, 202, 685, 701
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 2 cut(s) 249, 513
DinI GGCGCC 2 cut(s) 270, 385
DpnI GATC 6 cut(s) 109, 281, 400, 540, 650, 690
DpnII GATC 6 cut(s) 107, 279, 398, 538, 648, 688
EaeI YGGCCR 6 cut(s) 204, 345, 368, 372, 407, 498
EagI CGGCCG 2 cut(s) 372, 407
EciI GGCGGA 2 cut(s) 52, 233
Ecl136II GAGCTC 1 cut(s) 157
EclXI CGGCCG 2 cut(s) 372, 407
Eco130I CCWWGG 2 cut(s) 192, 339
Eco24I GRGCYC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 316
Eco52I CGGCCG 2 cut(s) 372, 407
Eco53kI GAGCTC 1 cut(s) 157
Eco88I CYCGRG 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 157
EcoO109I RGGNCCY 1 cut(s) 316
EcoRII CCWGG 2 cut(s) 308, 365
EcoT14I CCWWGG 2 cut(s) 192, 339
EcoT38I GRGCYC 1 cut(s) 159
EgeI GGCGCC 2 cut(s) 270, 385
EheI GGCGCC 2 cut(s) 270, 385
ErhI CCWWGG 2 cut(s) 192, 339
FaeI CATG 5 cut(s) 31, 106, 205, 688, 704
FatI CATG 5 cut(s) 27, 102, 201, 684, 700
FauI CCCGC 2 cut(s) 144, 330
FauNDI CATATG 1 cut(s) 592
FbaI TGATCA 1 cut(s) 648
FblI GTMKAC 1 cut(s) 210
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 159
FseI GGCCGGCC 1 cut(s) 374
FspBI CTAG 2 cut(s) 446, 629
GlaI GCGC 4 cut(s) 270, 304, 385, 444
GsuI CTGGAG 1 cut(s) 541
HaeII RGCGCY 3 cut(s) 272, 387, 446
HaeIII GGCC 7 cut(s) 197, 206, 347, 370, 374, 409, 500
HapII CCGG 7 cut(s) 75, 117, 152, 371, 375, 387, 636
HgaI GACGC 1 cut(s) 122
HhaI GCGC 4 cut(s) 271, 305, 386, 445
Hin1I GRCGYC 3 cut(s) 114, 269, 384
Hin1II CATG 5 cut(s) 31, 106, 205, 688, 704
Hin6I GCGC 4 cut(s) 269, 303, 384, 443
HinP1I GCGC 4 cut(s) 269, 303, 384, 443
HincII GTYRAC 2 cut(s) 211, 432
HindII GTYRAC 2 cut(s) 211, 432
HinfI GANTC 5 cut(s) 59, 131, 530, 697, 734
HpaII CCGG 7 cut(s) 75, 117, 152, 371, 375, 387, 636
HphI GGTGA 3 cut(s) 625, 659, 706
Hpy166II GTNNAC 3 cut(s) 211, 219, 432
Hpy188I TCNGA 4 cut(s) 55, 112, 130, 252
Hpy188III TCNNGA 1 cut(s) 747
Hpy8I GTNNAC 3 cut(s) 211, 219, 432
Hpy99I CGWCG 3 cut(s) 116, 212, 439
HpyAV CCTTC 2 cut(s) 259, 671
HpyCH4III ACNGT 1 cut(s) 577
HpyCH4V TGCA 3 cut(s) 69, 590, 704
HpyF10VI GCNNNNNNNGC 8 cut(s) 71, 75, 203, 334, 409, 525, 596, 605
HpyF3I CTNAG 2 cut(s) 249, 513
Hsp92I GRCGYC 3 cut(s) 114, 269, 384
Hsp92II CATG 5 cut(s) 31, 106, 205, 688, 704
HspAI GCGC 4 cut(s) 269, 303, 384, 443
KasI GGCGCC 2 cut(s) 268, 383
KroI GCCGGC 3 cut(s) 74, 116, 370
KroNI GCCGGC 3 cut(s) 76, 118, 372
Ksp22I TGATCA 1 cut(s) 648
Kzo9I GATC 6 cut(s) 107, 279, 398, 538, 648, 688
LmnI GCTCC 4 cut(s) 83, 154, 355, 522
Lsp1109I GCAGC 3 cut(s) 184, 583, 716
MaeI CTAG 2 cut(s) 446, 629
MaeIII GTNAC 3 cut(s) 571, 631, 665
MalI GATC 6 cut(s) 109, 281, 400, 540, 650, 690
MbiI CCGCTC 2 cut(s) 350, 525
MboI GATC 6 cut(s) 107, 279, 398, 538, 648, 688
MboII GAAGA 3 cut(s) 43, 68, 673
MhlI GDGCHC 3 cut(s) 159, 339, 366
MluCI AATT 1 cut(s) 640
Mly113I GGCGCC 2 cut(s) 269, 384
MlyI GAGTC 3 cut(s) 53, 125, 706
MmeI TCCRAC 2 cut(s) 135, 153
MreI CGCCGGCG 1 cut(s) 116
MroNI GCCGGC 3 cut(s) 74, 116, 370
MspA1I CMGCKG 1 cut(s) 503
MspI CCGG 7 cut(s) 75, 117, 152, 371, 375, 387, 636
MspR9I CCNGG 5 cut(s) 152, 310, 367, 388, 637
MvaI CCWGG 2 cut(s) 310, 367
MvnI CGCG 2 cut(s) 303, 403
MwoI GCNNNNNNNGC 8 cut(s) 71, 75, 203, 334, 409, 525, 596, 605
NaeI GCCGGC 3 cut(s) 76, 118, 372
NarI GGCGCC 2 cut(s) 269, 384
NciI CCSGG 3 cut(s) 152, 388, 637
NdeI CATATG 1 cut(s) 592
NdeII GATC 6 cut(s) 107, 279, 398, 538, 648, 688
NgoMIV GCCGGC 3 cut(s) 74, 116, 370
NlaIII CATG 5 cut(s) 31, 106, 205, 688, 704
NlaIV GGNNCC 6 cut(s) 79, 270, 318, 336, 385, 656
NmeAIII GCCGAG 1 cut(s) 438
NmuCI GTSAC 3 cut(s) 571, 631, 665
NotI GCGGCCGC 1 cut(s) 407
PdiI GCCGGC 3 cut(s) 76, 118, 372
PfeI GAWTC 2 cut(s) 530, 734
Ple19I CGATCG 1 cut(s) 282
PleI GAGTC 3 cut(s) 53, 125, 705
PluTI GGCGCC 2 cut(s) 272, 387
PpsI GAGTC 3 cut(s) 53, 125, 705
PpuMI RGGWCCY 1 cut(s) 316
Psp124BI GAGCTC 1 cut(s) 159
Psp5II RGGWCCY 1 cut(s) 316
Psp6I CCWGG 2 cut(s) 308, 365
PspGI CCWGG 2 cut(s) 308, 365
PspN4I GGNNCC 6 cut(s) 79, 270, 318, 336, 385, 656
PspPI GGNCC 1 cut(s) 316
PspPPI RGGWCCY 1 cut(s) 316
PvuI CGATCG 1 cut(s) 282
RigI GGCCGGCC 1 cut(s) 374
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SacI GAGCTC 1 cut(s) 159
SalI GTCGAC 1 cut(s) 209
Sau3AI GATC 6 cut(s) 107, 279, 398, 538, 648, 688
Sau96I GGNCC 1 cut(s) 316
ScaI AGTACT 1 cut(s) 227
SchI GAGTC 3 cut(s) 53, 125, 706
ScrFI CCNGG 5 cut(s) 152, 310, 367, 388, 637
SduI GDGCHC 3 cut(s) 159, 339, 366
SetI ASST 7 cut(s) 96, 159, 345, 560, 630, 663, 696
SfiI GGCCNNNNNGGCC 1 cut(s) 203
SfoI GGCGCC 2 cut(s) 270, 385
SgrAI CRCCGGYG 1 cut(s) 116
SinI GGWCC 1 cut(s) 316
Sse9I AATT 1 cut(s) 640
SspDI GGCGCC 2 cut(s) 268, 383
SspMI CTAG 2 cut(s) 446, 629
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 5 cut(s) 150, 308, 365, 386, 635
StyI CCWWGG 2 cut(s) 192, 339
TaaI ACNGT 1 cut(s) 577
TaqI TCGA 1 cut(s) 210
TasI AATT 1 cut(s) 640
TatI WGTACW 1 cut(s) 225
TfiI GAWTC 2 cut(s) 530, 734
TseFI GTSAC 3 cut(s) 571, 631, 665
TseI GCWGC 3 cut(s) 172, 596, 704
Tsp45I GTSAC 3 cut(s) 571, 631, 665
TspDTI ATGAA 2 cut(s) 44, 673
VpaK11BI GGWCC 1 cut(s) 316
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XmiI GTMKAC 1 cut(s) 210
XspI CTAG 2 cut(s) 446, 629
ZrmI AGTACT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.