Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006012

Physical Location & Seq

Genomic Coordinates Forward (+)

57691378 .. 57693145

Gene Structure 1768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004252

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGATGCCCTGAAAGGCAAGCCAACCATGAAGAAGTCCTCCTCCATCAACTCCGACGACACCGCCGGCTCCCCCCTCCGCTACCTCTCCCCCATGCGATCCGACGCCGGCGACCCCTCCGAATCCCCGCCCTACGCCTCCCCGGAGCTCTCCCCCCAGAAGCCGCCCCCCGACAACAACTCCAAGGCCATCATGGCCGTCGACAAGTTCACGCAGTACTCCCCCTCCCCCTTCCGCCCTCAGAAACCGCCCGAGAAGGCCCCCTCGCCGCTCGTCGTCTACAACAGCAACAGCGCCGCCAGGGAGGACCCCCCGCCCTCGGTGCCCAAGGCGGCCGCTCCTAACGGCGTGCCCTGGCCGGCCGGAGGCGGCGTTGGGAGATCGAGGCGGCCGCCGAGGAGAGACGATGTGTTGACGACCGCGGCGCTAGGGTTTCGGGTTAGCGAGTTGGTGCTGTGCTTGATTTCGTTCTCGGTTATGGCCGCTGATAAAACTCAGGGCTGGAGCGGCGATTCCTTTGATCGCTACAAGGAATACAGGTATTGTTTAGCTGTGACTGTTATTGGATTTGCATATGCTGCTTTTCAAGCATACAATCTATCCTACCACCTAGTCACCGGGAATTATGTGATCAGGCACCACCTTCGTCACCACTTTGATTTCTTCATGGATCAGGTACTGGCGTATCTTCTCATTTCAGCATCATCATCGGCAGCCACCAGGGTCGACGACTGGCAATCAAATTGGGGAAAAGATGAGTTCACGGAGATGGCTACTGCTTCAGTCAGCATGGCCTTCCTCGCTTTCATTGCCTTTGCACTAAGCTCCCTGATCTCTGGTTACAACCTATGTACCCATGATTCTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

290

Amino Acids

31.56

Weight (kDa)

7.71

Isoelectric Point (pI)

53.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	137 - 271	2.2e-31	Casparian strip membrane protein domain
MARVEL	PF01284	139 - 275	1.8e-07	Membrane-associating domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36330 AT2G36330 AT5G62820
fragaria_vesca	FvH4_5g05230 FvH4_5g05230
malus_domestica	MD06G1175400.v1.1 MD13G1274000.v1.1 MD14G1182200.v1.1
prunus_persica	Prupe.5G174700_v2.0.a1
pyrus_communis	pycom06g15610 pycom14g15110
rosa_chinensis	RchiOBHm_Chr4g0422081 RchiOBHm_Chr7g0193681
rosa_laevigata	RLG00000004252 RLG00000009743
rosa_roxburghii	Rroxscaffold_1G00017200 Rroxscaffold_3G00261910 Rroxscaffold_4G00285190
rosa_rugosa	Rorug07G0011300
rosa_samantha	Rh2AG505200 Rh4BG244400 Rh4CG255200 Rh7AG138000 Rh7BG138200 Rh7CG141900 Rh7DG139300
rosa_wichuraiana	Rw7G011750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	322, 636
AccBSI	CCGCTC	3 cut(s)	271, 338, 507
AccI	GTMKAC	3 cut(s)	201, 279, 726
AccII	CGCG	1 cut(s)	422
AclWI	GGATC	2 cut(s)	93, 678
AcoI	YGGCCR	6 cut(s)	195, 333, 356, 360, 389, 480
AcuI	CTGAAG	1 cut(s)	765
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	3 cut(s)	218, 678, 853
AfiI	CCNNNNNNNGG	2 cut(s)	319, 365
AgsI	TTSAA	1 cut(s)	587
AjnI	CCWGG	3 cut(s)	299, 353, 719
AluBI	AGCT	3 cut(s)	148, 551, 825
AluI	AGCT	3 cut(s)	148, 551, 825
Alw21I	GWGCWC	1 cut(s)	150
Alw26I	GTCTC	1 cut(s)	396
AlwI	GGATC	2 cut(s)	93, 678
AlwNI	CAGNNNCTG	1 cut(s)	679
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	9 cut(s)	186, 195, 258, 333, 356, 360, 389, 480, 792
ApeKI	GCWGC	2 cut(s)	578, 713
AspLEI	GCGC	2 cut(s)	296, 427
AspS9I	GGNCC	2 cut(s)	259, 307
AsuC2I	CCSGG	2 cut(s)	143, 619
AsuHPI	GGTGA	2 cut(s)	607, 641
AvaI	CYCGRG	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	307
BaeGI	GKGCMC	2 cut(s)	327, 354
BaeI	ACNNNNGTAYC	6 cut(s)	668, 668, 701, 701, 835, 868
BanI	GGYRCC	2 cut(s)	322, 636
BanII	GRGCYC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	2 cut(s)	565, 725
BccI	CCATC	3 cut(s)	53, 197, 763
BceAI	ACGGC	2 cut(s)	182, 361
BcgI	CGANNNNNNTGC	4 cut(s)	626, 660, 690, 724
BciT130I	CCWGG	3 cut(s)	301, 355, 721
BclI	TGATCA	1 cut(s)	630
BcnI	CCSGG	2 cut(s)	143, 619
BcoDI	GTCTC	1 cut(s)	396
BfaI	CTAG	2 cut(s)	428, 611
BfoI	RGCGCY	2 cut(s)	297, 428
BglI	GCCNNNNNGGC	1 cut(s)	194
BmcAI	AGTACT	1 cut(s)	218
Bme1390I	CCNGG	5 cut(s)	143, 301, 355, 619, 721
Bme18I	GGWCC	1 cut(s)	307
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	2 cut(s)	259, 307
BmiI	GGNNCC	5 cut(s)	70, 261, 309, 324, 638
BmrFI	CCNGG	5 cut(s)	143, 301, 355, 619, 721
BmsI	GCATC	1 cut(s)	710
BpmI	CTGGAG	1 cut(s)	523
BpuMI	CCSGG	2 cut(s)	143, 619
BsaAI	YACGTR	1 cut(s)	867
BsaHI	GRCGYC	1 cut(s)	105
BsaJI	CCNNGG	9 cut(s)	141, 183, 300, 318, 327, 353, 395, 420, 720
BsaXI	ACNNNNNCTCC	6 cut(s)	164, 194, 209, 239, 357, 387
Bsc4I	CCNNNNNNNGG	2 cut(s)	319, 365
Bse118I	RCCGGY	3 cut(s)	65, 107, 358
Bse1I	ACTGG	2 cut(s)	684, 737
Bse3DI	GCAATG	1 cut(s)	807
BseBI	CCWGG	3 cut(s)	301, 355, 721
BseDI	CCNNGG	9 cut(s)	141, 183, 300, 318, 327, 353, 395, 420, 720
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	319, 365
BseMI	GCAATG	1 cut(s)	807
BseMII	CTCAG	2 cut(s)	254, 509
BseNI	ACTGG	2 cut(s)	684, 737
BseRI	GAGGAG	2 cut(s)	31, 412
BseSI	GKGCMC	2 cut(s)	327, 354
BseX3I	CGGCCG	3 cut(s)	333, 360, 389
BseXI	GCAGC	2 cut(s)	565, 725
Bsh1236I	CGCG	1 cut(s)	422
Bsh1285I	CGRYCG	4 cut(s)	336, 363, 392, 420
BshFI	GGCC	9 cut(s)	188, 197, 260, 335, 358, 362, 391, 482, 794
BshNI	GGYRCC	2 cut(s)	322, 636
BsiEI	CGRYCG	4 cut(s)	336, 363, 392, 420
BsiHKAI	GWGCWC	1 cut(s)	150
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	6 cut(s)	66, 108, 143, 359, 363, 618
BslI	CCNNNNNNNGG	2 cut(s)	319, 365
BsmAI	GTCTC	1 cut(s)	396
BsmBI	CGTCTC	1 cut(s)	396
BsnI	GGCC	9 cut(s)	188, 197, 260, 335, 358, 362, 391, 482, 794
BsoBI	CYCGRG	1 cut(s)	251
Bsp1286I	GDGCHC	3 cut(s)	150, 327, 354
Bsp143I	GATC	6 cut(s)	98, 380, 520, 630, 670, 831
BspANI	GGCC	9 cut(s)	188, 197, 260, 335, 358, 362, 391, 482, 794
BspCNI	CTCAG	2 cut(s)	253, 508
BspFNI	CGCG	1 cut(s)	422
BspLI	GGNNCC	5 cut(s)	70, 261, 309, 324, 638
BspPI	GGATC	2 cut(s)	93, 678
BspT107I	GGYRCC	2 cut(s)	322, 636
BsrBI	CCGCTC	3 cut(s)	271, 338, 507
BsrDI	GCAATG	1 cut(s)	807
BsrFI	RCCGGY	3 cut(s)	65, 107, 358
BsrI	ACTGG	2 cut(s)	684, 737
BssAI	RCCGGY	3 cut(s)	65, 107, 358
BssECI	CCNNGG	9 cut(s)	141, 183, 300, 318, 327, 353, 395, 420, 720
BssMI	GATC	6 cut(s)	98, 380, 520, 630, 670, 831
BssNI	GRCGYC	1 cut(s)	105
BssT1I	CCWWGG	2 cut(s)	183, 327
Bst2UI	CCWGG	3 cut(s)	301, 355, 721
Bst4CI	ACNGT	1 cut(s)	559
BstACI	GRCGYC	1 cut(s)	105
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstBAI	YACGTR	1 cut(s)	867
BstC8I	GCNNGC	5 cut(s)	20, 67, 109, 350, 360
BstDEI	CTNAG	3 cut(s)	240, 495, 821
BstDSI	CCRYGG	1 cut(s)	420
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	422
BstH2I	RGCGCY	2 cut(s)	297, 428
BstHHI	GCGC	2 cut(s)	296, 427
BstKTI	GATC	6 cut(s)	101, 383, 523, 633, 673, 834
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	6 cut(s)	98, 380, 520, 630, 670, 831
BstMCI	CGRYCG	4 cut(s)	336, 363, 392, 420
BstMWI	GCNNNNNNNGC	7 cut(s)	194, 322, 507, 578, 587, 800, 809
BstNI	CCWGG	3 cut(s)	301, 355, 721
BstSCI	CCNGG	5 cut(s)	141, 299, 353, 617, 719
BstSLI	GKGCMC	2 cut(s)	327, 354
BstUI	CGCG	1 cut(s)	422
BstV1I	GCAGC	2 cut(s)	565, 725
BstZI	CGGCCG	3 cut(s)	333, 360, 389
BsuRI	GGCC	9 cut(s)	188, 197, 260, 335, 358, 362, 391, 482, 794
BtgI	CCRYGG	1 cut(s)	420
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	5 cut(s)	20, 67, 109, 350, 360
CaiI	CAGNNNCTG	1 cut(s)	679
CciNI	GCGGCCGC	2 cut(s)	333, 389
CfoI	GCGC	2 cut(s)	296, 427
Cfr10I	RCCGGY	3 cut(s)	65, 107, 358
Cfr13I	GGNCC	2 cut(s)	259, 307
Cfr42I	CCGCGG	1 cut(s)	423
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	3 cut(s)	217, 677, 852
CviAII	CATG	6 cut(s)	28, 94, 193, 667, 790, 857
CviQI	GTAC	3 cut(s)	217, 677, 852
DdeI	CTNAG	3 cut(s)	240, 495, 821
DpnI	GATC	6 cut(s)	100, 382, 522, 632, 672, 833
DpnII	GATC	6 cut(s)	98, 380, 520, 630, 670, 831
EaeI	YGGCCR	6 cut(s)	195, 333, 356, 360, 389, 480
EagI	CGGCCG	3 cut(s)	333, 360, 389
EciI	GGCGGA	1 cut(s)	224
Ecl136II	GAGCTC	1 cut(s)	148
EclXI	CGGCCG	3 cut(s)	333, 360, 389
Eco130I	CCWWGG	2 cut(s)	183, 327
Eco24I	GRGCYC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	307
Eco52I	CGGCCG	3 cut(s)	333, 360, 389
Eco53kI	GAGCTC	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	765
Eco88I	CYCGRG	1 cut(s)	251
EcoICRI	GAGCTC	1 cut(s)	148
EcoO109I	RGGNCCY	2 cut(s)	259, 307
EcoRII	CCWGG	3 cut(s)	299, 353, 719
EcoT14I	CCWWGG	2 cut(s)	183, 327
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	2 cut(s)	183, 327
Esp3I	CGTCTC	1 cut(s)	396
FaeI	CATG	6 cut(s)	31, 97, 196, 670, 793, 860
FatI	CATG	6 cut(s)	27, 93, 192, 666, 789, 856
FauI	CCCGC	2 cut(s)	135, 321
FauNDI	CATATG	1 cut(s)	574
FbaI	TGATCA	1 cut(s)	630
FblI	GTMKAC	3 cut(s)	201, 279, 726
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	150
FseI	GGCCGGCC	1 cut(s)	362
FspBI	CTAG	2 cut(s)	428, 611
GlaI	GCGC	2 cut(s)	295, 426
GsuI	CTGGAG	1 cut(s)	523
HaeII	RGCGCY	2 cut(s)	297, 428
HaeIII	GGCC	9 cut(s)	188, 197, 260, 335, 358, 362, 391, 482, 794
HapII	CCGG	6 cut(s)	66, 108, 143, 359, 363, 618
HgaI	GACGC	1 cut(s)	113
HhaI	GCGC	2 cut(s)	296, 427
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	6 cut(s)	31, 97, 196, 670, 793, 860
Hin6I	GCGC	2 cut(s)	294, 425
HinP1I	GCGC	2 cut(s)	294, 425
HincII	GTYRAC	3 cut(s)	202, 414, 727
HindII	GTYRAC	3 cut(s)	202, 414, 727
HinfI	GANTC	3 cut(s)	122, 512, 860
HpaII	CCGG	6 cut(s)	66, 108, 143, 359, 363, 618
HphI	GGTGA	2 cut(s)	607, 641
Hpy166II	GTNNAC	6 cut(s)	202, 210, 280, 414, 727, 762
Hpy188I	TCNGA	4 cut(s)	55, 103, 121, 243
Hpy8I	GTNNAC	6 cut(s)	202, 210, 280, 414, 727, 762
Hpy99I	CGWCG	5 cut(s)	59, 107, 203, 278, 731
HpyAV	CCTTC	4 cut(s)	241, 250, 653, 805
HpyCH4III	ACNGT	1 cut(s)	559
HpyCH4IV	ACGT	1 cut(s)	866
HpyCH4V	TGCA	2 cut(s)	572, 818
HpyF10VI	GCNNNNNNNGC	7 cut(s)	194, 322, 507, 578, 587, 800, 809
HpyF3I	CTNAG	3 cut(s)	240, 495, 821
HpySE526I	ACGT	1 cut(s)	866
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	6 cut(s)	31, 97, 196, 670, 793, 860
HspAI	GCGC	2 cut(s)	294, 425
KroI	GCCGGC	3 cut(s)	65, 107, 358
KroNI	GCCGGC	3 cut(s)	67, 109, 360
Ksp22I	TGATCA	1 cut(s)	630
KspI	CCGCGG	1 cut(s)	423
Kzo9I	GATC	6 cut(s)	98, 380, 520, 630, 670, 831
LmnI	GCTCC	5 cut(s)	74, 145, 343, 504, 830
Lsp1109I	GCAGC	2 cut(s)	565, 725
LweI	GCATC	1 cut(s)	710
MaeI	CTAG	2 cut(s)	428, 611
MaeII	ACGT	1 cut(s)	866
MaeIII	GTNAC	4 cut(s)	553, 613, 647, 839
MalI	GATC	6 cut(s)	100, 382, 522, 632, 672, 833
MbiI	CCGCTC	3 cut(s)	271, 338, 507
MboI	GATC	6 cut(s)	98, 380, 520, 630, 670, 831
MboII	GAAGA	3 cut(s)	43, 655, 680
MhlI	GDGCHC	3 cut(s)	150, 327, 354
MluCI	AATT	2 cut(s)	622, 742
MmeI	TCCRAC	2 cut(s)	78, 126
MreI	CGCCGGCG	1 cut(s)	107
MroNI	GCCGGC	3 cut(s)	65, 107, 358
MslI	CAYNNNNRTG	1 cut(s)	767
MspA1I	CMGCKG	2 cut(s)	422, 485
MspI	CCGG	6 cut(s)	66, 108, 143, 359, 363, 618
MspR9I	CCNGG	5 cut(s)	143, 301, 355, 619, 721
MvaI	CCWGG	3 cut(s)	301, 355, 721
MvnI	CGCG	1 cut(s)	422
MwoI	GCNNNNNNNGC	7 cut(s)	194, 322, 507, 578, 587, 800, 809
NaeI	GCCGGC	3 cut(s)	67, 109, 360
NciI	CCSGG	2 cut(s)	143, 619
NdeI	CATATG	1 cut(s)	574
NdeII	GATC	6 cut(s)	98, 380, 520, 630, 670, 831
NgoMIV	GCCGGC	3 cut(s)	65, 107, 358
NlaIII	CATG	6 cut(s)	31, 97, 196, 670, 793, 860
NlaIV	GGNNCC	5 cut(s)	70, 261, 309, 324, 638
NmeAIII	GCCGAG	1 cut(s)	420
NmuCI	GTSAC	3 cut(s)	553, 613, 647
NotI	GCGGCCGC	2 cut(s)	333, 389
PdiI	GCCGGC	3 cut(s)	67, 109, 360
PfeI	GAWTC	3 cut(s)	122, 512, 860
Ppu21I	YACGTR	1 cut(s)	867
PpuMI	RGGWCCY	1 cut(s)	307
Psp124BI	GAGCTC	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	307
Psp6I	CCWGG	3 cut(s)	299, 353, 719
PspGI	CCWGG	3 cut(s)	299, 353, 719
PspN4I	GGNNCC	5 cut(s)	70, 261, 309, 324, 638
PspPI	GGNCC	2 cut(s)	259, 307
PspPPI	RGGWCCY	1 cut(s)	307
PstNI	CAGNNNCTG	1 cut(s)	679
RigI	GGCCGGCC	1 cut(s)	362
RsaI	GTAC	3 cut(s)	218, 678, 853
RsaNI	GTAC	3 cut(s)	217, 677, 852
RseI	CAYNNNNRTG	1 cut(s)	767
SacI	GAGCTC	1 cut(s)	150
SacII	CCGCGG	1 cut(s)	423
SalI	GTCGAC	2 cut(s)	200, 725
Sau3AI	GATC	6 cut(s)	98, 380, 520, 630, 670, 831
Sau96I	GGNCC	2 cut(s)	259, 307
ScaI	AGTACT	1 cut(s)	218
ScrFI	CCNGG	5 cut(s)	143, 301, 355, 619, 721
SduI	GDGCHC	3 cut(s)	150, 327, 354
SfaNI	GCATC	1 cut(s)	710
SfiI	GGCCNNNNNGGCC	1 cut(s)	194
Sfr303I	CCGCGG	1 cut(s)	423
SgrAI	CRCCGGYG	1 cut(s)	107
SgrBI	CCGCGG	1 cut(s)	423
SinI	GGWCC	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	767
Sse9I	AATT	2 cut(s)	622, 742
SspMI	CTAG	2 cut(s)	428, 611
SstI	GAGCTC	1 cut(s)	150
StyD4I	CCNGG	5 cut(s)	141, 299, 353, 617, 719
StyI	CCWWGG	2 cut(s)	183, 327
TaaI	ACNGT	1 cut(s)	559
TaiI	ACGT	1 cut(s)	869
TaqI	TCGA	3 cut(s)	201, 383, 726
TasI	AATT	2 cut(s)	622, 742
TatI	WGTACW	1 cut(s)	216
TfiI	GAWTC	3 cut(s)	122, 512, 860
TseFI	GTSAC	3 cut(s)	553, 613, 647
TseI	GCWGC	2 cut(s)	578, 713
Tsp45I	GTSAC	3 cut(s)	553, 613, 647
TspDTI	ATGAA	3 cut(s)	44, 655, 796
TspGWI	ACGGA	1 cut(s)	779
VpaK11BI	GGWCC	1 cut(s)	307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XmiI	GTMKAC	3 cut(s)	201, 279, 726
XspI	CTAG	2 cut(s)	428, 611
ZrmI	AGTACT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.