Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006012

Physical Location & Seq

Genomic Coordinates Forward (+)

72780031 .. 72782653

Gene Structure 2623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG505200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGTCCAAGGTTTGGGTTGAGAGATGGAGGACGGCAAGGCAGCCCCTAAGGAGGGACCTTGTGGTGAAGATGGCAGCGCTAGGATTTCAGGGTATCGAGTTGTTGCCGTGCTTGATTTTGTTCTCGGTTATGGCCGCTAATAAAACTCATGGCTGGGTTGGCGACTCCTTTGATCGCTACAAGGAATACAGGTTTCCATCTATCTCTCAATTTGGAATTTCGAATTTTAGCAATCGATTTCAATTAAGATTGGGTTCTTTTGAATACATGTTCTGGGTACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

94

Amino Acids

11.13

Weight (kDa)

10.11

Isoelectric Point (pI)

57.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36330 AT2G36330 AT5G62820
fragaria_vesca	FvH4_5g05230 FvH4_5g05230
malus_domestica	MD06G1175400.v1.1 MD13G1274000.v1.1 MD14G1182200.v1.1
prunus_persica	Prupe.5G174700_v2.0.a1
pyrus_communis	pycom06g15610 pycom14g15110
rosa_chinensis	RchiOBHm_Chr4g0422081 RchiOBHm_Chr7g0193681
rosa_laevigata	RLG00000004252 RLG00000009743
rosa_roxburghii	Rroxscaffold_1G00017200 Rroxscaffold_3G00261910 Rroxscaffold_4G00285190
rosa_rugosa	Rorug07G0011300
rosa_samantha	Rh2AG505200 Rh4BG244400 Rh4CG255200 Rh7AG138000 Rh7BG138200 Rh7CG141900 Rh7DG139300
rosa_wichuraiana	Rw7G011750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	277
AccB1I	GGYRCC	1 cut(s)	277
AccB7I	CCANNNNNTGG	1 cut(s)	12
AciI	CCGC	1 cut(s)	135
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	2 cut(s)	216, 223
AfaI	GTAC	1 cut(s)	279
AfeI	AGCGCT	1 cut(s)	78
AfiI	CCNNNNNNNGG	3 cut(s)	12, 51, 52
AflIII	ACRYGT	1 cut(s)	267
AgsI	TTSAA	2 cut(s)	242, 263
Aor51HI	AGCGCT	1 cut(s)	78
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	2 cut(s)	40, 74
ApoI	RAATTY	2 cut(s)	216, 223
Asp718I	GGTACC	1 cut(s)	277
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	76
AsuII	TTCGAA	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	55
AxyI	CCTNAGG	1 cut(s)	47
BanI	GGYRCC	1 cut(s)	277
BbvI	GCAGC	2 cut(s)	52, 86
BccI	CCATC	3 cut(s)	18, 64, 205
BceAI	ACGGC	2 cut(s)	48, 91
BfaI	CTAG	1 cut(s)	80
BfoI	RGCGCY	1 cut(s)	80
BisI	GCNGC	3 cut(s)	41, 75, 135
BlsI	GCNGC	3 cut(s)	42, 76, 136
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	2 cut(s)	56, 279
Bpu14I	TTCGAA	1 cut(s)	221
Bsa29I	ATCGAT	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 51, 52
Bse21I	CCTNAGG	1 cut(s)	47
BseCI	ATCGAT	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	6
BseLI	CCNNNNNNNGG	3 cut(s)	12, 51, 52
BseXI	GCAGC	2 cut(s)	52, 86
BseYI	CCCAGC	1 cut(s)	153
BshFI	GGCC	1 cut(s)	134
BshNI	GGYRCC	1 cut(s)	277
BshVI	ATCGAT	1 cut(s)	235
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	3 cut(s)	12, 51, 52
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	134
Bsp119I	TTCGAA	1 cut(s)	221
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	1 cut(s)	134
BspDI	ATCGAT	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	56, 279
BspT104I	TTCGAA	1 cut(s)	221
BspT107I	GGYRCC	1 cut(s)	277
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	1 cut(s)	172
BssT1I	CCWWGG	1 cut(s)	6
BstBI	TTCGAA	1 cut(s)	221
BstDEI	CTNAG	1 cut(s)	47
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	271
BstV1I	GCAGC	2 cut(s)	52, 86
Bsu15I	ATCGAT	1 cut(s)	235
Bsu36I	CCTNAGG	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	134
BsuTUI	ATCGAT	1 cut(s)	235
CfoI	GCGC	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	55
ClaI	ATCGAT	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	2 cut(s)	149, 268
CviJI	RGCY	3 cut(s)	43, 134, 153
CviKI_1	RGCY	3 cut(s)	43, 134, 153
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	55
Eco47III	AGCGCT	1 cut(s)	78
Eco81I	CCTNAGG	1 cut(s)	47
EcoO109I	RGGNCCY	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	2 cut(s)	152, 271
FaiI	YATR	3 cut(s)	131, 150, 269
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	2 cut(s)	148, 267
Fnu4HI	GCNGC	3 cut(s)	41, 75, 135
Fsp4HI	GCNGC	3 cut(s)	41, 75, 135
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	3 cut(s)	41, 75, 135
GsaI	CCCAGC	1 cut(s)	157
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	134
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	2 cut(s)	152, 271
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HinfI	GANTC	1 cut(s)	164
HphI	GGTGA	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpyF3I	CTNAG	1 cut(s)	47
Hsp92II	CATG	2 cut(s)	152, 271
HspAI	GCGC	1 cut(s)	77
KpnI	GGTACC	1 cut(s)	281
Kzo9I	GATC	1 cut(s)	172
LpnPI	CCDG	4 cut(s)	74, 139, 175, 259
Lsp1109I	GCAGC	2 cut(s)	52, 86
MaeI	CTAG	1 cut(s)	80
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	1 cut(s)	79
MluCI	AATT	4 cut(s)	209, 216, 223, 242
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	2 cut(s)	21, 45
MseI	TTAA	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	159
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	2 cut(s)	152, 271
NlaIV	GGNNCC	2 cut(s)	56, 279
NspI	RCATGY	1 cut(s)	271
NspV	TTCGAA	1 cut(s)	221
PciI	ACATGT	1 cut(s)	267
PflMI	CCANNNNNTGG	1 cut(s)	12
PkrI	GCNGC	3 cut(s)	42, 76, 136
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PpuMI	RGGWCCY	1 cut(s)	55
PscI	ACATGT	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	153
PspN4I	GGNNCC	2 cut(s)	56, 279
PspPI	GGNCC	1 cut(s)	55
PspPPI	RGGWCCY	1 cut(s)	55
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	3 cut(s)	41, 75, 135
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	158
SetI	ASST	4 cut(s)	12, 60, 194, 283
SfuI	TTCGAA	1 cut(s)	221
SinI	GGWCC	1 cut(s)	55
Sse9I	AATT	4 cut(s)	209, 216, 223, 242
SsiI	CCGC	1 cut(s)	135
SspMI	CTAG	1 cut(s)	80
StyI	CCWWGG	1 cut(s)	6
TaqI	TCGA	3 cut(s)	96, 221, 235
TasI	AATT	4 cut(s)	209, 216, 223, 242
TauI	GCSGC	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TseI	GCWGC	2 cut(s)	40, 74
Van91I	CCANNNNNTGG	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	55
XapI	RAATTY	2 cut(s)	216, 223
XceI	RCATGY	1 cut(s)	271
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.