Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0006012

Physical Location & Seq

Genomic Coordinates Reverse (-)

17828115 .. 17829866

Gene Structure 1752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g15110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGAATCCCAACCCCAATCCCAAAATCCCAACCACCACCCCCAGAAATCCAATCCCAACATGAAGAAGTCTTGGTCTTTGAAATCCGACGACTCGGCCCAGGCCGACTCTCCCCTCCGATTCCACTCCCCGATCCGATCCGATGCCTTCGACCCGCCCGACACCCCGCCGTATGAGTCCGTCGAGAACACGCCGGAAAATCCGGTCGACAACTCCAAGGCGATCACGGTCGTCGACAAGTTCACCCAGTACTCGCCGCTCCGGCCTCAGAAGCCGCCGGAGAATGCCAAGGCGCCGTCGCCGGTGGTGGTGTACAACCGGGCGGTGAGGGAGGAAGTGGCGCCGTCCGTGTCGAAGGTTGGGCCGACCGGCGGAGTCAACGGTGTTGGAGGCGGGGAGGAAGGCGGAGTCACCGGTGTTGGCGGTGGGAGGTCGAGGGGTGCGACGAATTCGATTCTGAGACGGTCGAAGAGGGGGGAGATGCTGCAGACGGCGGCGCTAGGGTTTAGAGTGAGCGAGTTGGTGCTGTGCTTGATTTCATTCTCGGTTTTGGCGGCGGATAAGACTCGGGGCTGGAGCGGCGACTCCTTCGATCGCTACAAGGAATACAGGTATTGCTTATCTGTGAATGTAATTGGATTTGCATATGCTGCCTTCCAAGCCTACAATCTATCCTACCATATGGTCACCGGGAAGTACGTGATCCGCCACCATCTTCGTCGCCACTTTGATTTCTTCATGGATCAGGTACTGGCATACCTTCTCATTTCAGCATCGTCGTCTGCAGCCACCCGGCTTGACGACTGGCAATCAAATTGGGGGACGGATGAGTTCACGGAGATGGCCACTGCTTCGGTCAGCATGGCCTTCCTGGCTTTTGTTGCCTTTGCGCTTAGCTCCCTCGTATCTGGTTACAACCTCTGTACCTATGATTCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

314

Amino Acids

34.31

Weight (kDa)

7.06

Isoelectric Point (pI)

48.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	161 - 295	1.7e-30	Casparian strip membrane protein domain
MARVEL	PF01284	167 - 299	4.7e-07	Membrane-associating domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36330 AT2G36330 AT5G62820
fragaria_vesca	FvH4_5g05230 FvH4_5g05230
malus_domestica	MD06G1175400.v1.1 MD13G1274000.v1.1 MD14G1182200.v1.1
prunus_persica	Prupe.5G174700_v2.0.a1
pyrus_communis	pycom06g15610 pycom14g15110
rosa_chinensis	RchiOBHm_Chr4g0422081 RchiOBHm_Chr7g0193681
rosa_laevigata	RLG00000004252 RLG00000009743
rosa_roxburghii	Rroxscaffold_1G00017200 Rroxscaffold_3G00261910 Rroxscaffold_4G00285190
rosa_rugosa	Rorug07G0011300
rosa_samantha	Rh2AG505200 Rh4BG244400 Rh4CG255200 Rh7AG138000 Rh7BG138200 Rh7CG141900 Rh7DG139300
rosa_wichuraiana	Rw7G011750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	292, 340
AccBSI	CCGCTC	2 cut(s)	259, 579
AccI	GTMKAC	2 cut(s)	207, 234
AclWI	GGATC	4 cut(s)	127, 132, 697, 750
AcoI	YGGCCR	1 cut(s)	843
AcsI	RAATTY	1 cut(s)	448
AcyI	GRCGYC	2 cut(s)	293, 341
AfaI	GTAC	5 cut(s)	251, 314, 698, 750, 925
AfiI	CCNNNNNNNGG	1 cut(s)	371
AgeI	ACCGGT	1 cut(s)	413
AgsI	TTSAA	1 cut(s)	82
AjnI	CCWGG	2 cut(s)	99, 870
AluBI	AGCT	1 cut(s)	897
AluI	AGCT	1 cut(s)	897
Alw26I	GTCTC	1 cut(s)	454
AlwI	GGATC	4 cut(s)	127, 132, 697, 750
AlwNI	CAGNNNCTG	1 cut(s)	751
Ama87I	CYCGRG	1 cut(s)	567
AoxI	GGCC	6 cut(s)	96, 102, 263, 362, 843, 864
ApeKI	GCWGC	3 cut(s)	484, 650, 785
ApoI	RAATTY	1 cut(s)	448
AsiGI	ACCGGT	1 cut(s)	413
AspLEI	GCGC	4 cut(s)	295, 343, 499, 892
AspS9I	GGNCC	2 cut(s)	97, 362
AsuC2I	CCSGG	3 cut(s)	320, 691, 793
AsuHPI	GGTGA	4 cut(s)	235, 337, 403, 679
AvaI	CYCGRG	1 cut(s)	567
BaeI	ACNNNNGTAYC	2 cut(s)	907, 940
BalI	TGGCCA	1 cut(s)	845
BanI	GGYRCC	2 cut(s)	292, 340
BbvI	GCAGC	3 cut(s)	471, 637, 797
BccI	CCATC	2 cut(s)	720, 835
BceAI	ACGGC	4 cut(s)	154, 280, 328, 507
BciT130I	CCWGG	2 cut(s)	101, 872
BcnI	CCSGG	3 cut(s)	320, 691, 793
BcoDI	GTCTC	1 cut(s)	454
BfaI	CTAG	1 cut(s)	500
BfmI	CTRYAG	2 cut(s)	485, 783
BfoI	RGCGCY	3 cut(s)	296, 344, 500
BglI	GCCNNNNNGGC	2 cut(s)	262, 872
BisI	GCNGC	8 cut(s)	257, 275, 485, 495, 555, 580, 651, 786
BlpI	GCTNAGC	1 cut(s)	893
BlsI	GCNGC	8 cut(s)	258, 276, 486, 496, 556, 581, 652, 787
BmcAI	AGTACT	1 cut(s)	251
Bme1390I	CCNGG	5 cut(s)	101, 320, 691, 793, 872
BmeT110I	CYCGRG	1 cut(s)	567
BmgT120I	GGNCC	2 cut(s)	97, 362
BmiI	GGNNCC	2 cut(s)	294, 342
BmrFI	CCNGG	5 cut(s)	101, 320, 691, 793, 872
BmrI	ACTGGG	1 cut(s)	241
BmsI	GCATC	3 cut(s)	133, 471, 782
BmuI	ACTGGG	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	595
Bpu1102I	GCTNAGC	1 cut(s)	893
BpuMI	CCSGG	3 cut(s)	320, 691, 793
BsaAI	YACGTR	1 cut(s)	700
BsaHI	GRCGYC	2 cut(s)	293, 341
BsaJI	CCNNGG	3 cut(s)	99, 216, 288
BsaWI	WCCGGW	2 cut(s)	202, 413
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse118I	RCCGGY	3 cut(s)	301, 368, 413
Bse1I	ACTGG	3 cut(s)	247, 756, 809
BseBI	CCWGG	2 cut(s)	101, 872
BseDI	CCNNGG	3 cut(s)	99, 216, 288
BseGI	GGATG	1 cut(s)	832
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMII	CTCAG	2 cut(s)	281, 449
BseNI	ACTGG	3 cut(s)	247, 756, 809
BseXI	GCAGC	3 cut(s)	471, 637, 797
Bsh1285I	CGRYCG	5 cut(s)	207, 231, 369, 467, 595
BshFI	GGCC	6 cut(s)	98, 104, 265, 364, 845, 866
BshNI	GGYRCC	2 cut(s)	292, 340
BshTI	ACCGGT	1 cut(s)	413
BsiEI	CGRYCG	5 cut(s)	207, 231, 369, 467, 595
BsiHKCI	CYCGRG	1 cut(s)	567
BslFI	GGGAC	1 cut(s)	835
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmAI	GTCTC	1 cut(s)	454
BsmBI	CGTCTC	1 cut(s)	454
BsmFI	GGGAC	1 cut(s)	835
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	6 cut(s)	98, 104, 265, 364, 845, 866
BsoBI	CYCGRG	1 cut(s)	567
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	6 cut(s)	132, 137, 222, 592, 702, 742
Bsp1720I	GCTNAGC	1 cut(s)	893
BspANI	GGCC	6 cut(s)	98, 104, 265, 364, 845, 866
BspCNI	CTCAG	2 cut(s)	280, 450
BspLI	GGNNCC	2 cut(s)	294, 342
BspMAI	CTGCAG	2 cut(s)	489, 787
BspPI	GGATC	4 cut(s)	127, 132, 697, 750
BspT107I	GGYRCC	2 cut(s)	292, 340
BsrBI	CCGCTC	2 cut(s)	259, 579
BsrFI	RCCGGY	3 cut(s)	301, 368, 413
BsrGI	TGTACA	1 cut(s)	312
BsrI	ACTGG	3 cut(s)	247, 756, 809
BssAI	RCCGGY	3 cut(s)	301, 368, 413
BssECI	CCNNGG	3 cut(s)	99, 216, 288
BssMI	GATC	6 cut(s)	132, 137, 222, 592, 702, 742
BssNI	GRCGYC	2 cut(s)	293, 341
BssT1I	CCWWGG	2 cut(s)	216, 288
Bst2UI	CCWGG	2 cut(s)	101, 872
Bst4CI	ACNGT	3 cut(s)	229, 383, 465
Bst6I	CTCTTC	1 cut(s)	464
BstACI	GRCGYC	2 cut(s)	293, 341
BstAPI	GCANNNNNTGC	1 cut(s)	650
BstAUI	TGTACA	1 cut(s)	312
BstBAI	YACGTR	1 cut(s)	700
BstDEI	CTNAG	3 cut(s)	267, 458, 893
BstEII	GGTNACC	1 cut(s)	685
BstF5I	GGATG	1 cut(s)	832
BstH2I	RGCGCY	3 cut(s)	296, 344, 500
BstHHI	GCGC	4 cut(s)	295, 343, 499, 892
BstKTI	GATC	6 cut(s)	135, 140, 225, 595, 705, 745
BstMAI	GTCTC	1 cut(s)	454
BstMBI	GATC	6 cut(s)	132, 137, 222, 592, 702, 742
BstMCI	CGRYCG	5 cut(s)	207, 231, 369, 467, 595
BstMWI	GCNNNNNNNGC	7 cut(s)	262, 271, 579, 650, 659, 872, 881
BstNI	CCWGG	2 cut(s)	101, 872
BstPI	GGTNACC	1 cut(s)	685
BstSCI	CCNGG	5 cut(s)	99, 318, 689, 791, 870
BstSFI	CTRYAG	2 cut(s)	485, 783
BstV1I	GCAGC	3 cut(s)	471, 637, 797
BsuRI	GGCC	6 cut(s)	98, 104, 265, 364, 845, 866
BtsCI	GGATG	1 cut(s)	832
BtsI	GCAGTG	1 cut(s)	846
BtsIMutI	CAGTG	1 cut(s)	846
CaiI	CAGNNNCTG	1 cut(s)	751
CfoI	GCGC	4 cut(s)	295, 343, 499, 892
Cfr10I	RCCGGY	3 cut(s)	301, 368, 413
Cfr13I	GGNCC	2 cut(s)	97, 362
Csp6I	GTAC	5 cut(s)	250, 313, 697, 749, 924
CspAI	ACCGGT	1 cut(s)	413
CspCI	CAANNNNNGTGG	2 cut(s)	778, 813
CviAII	CATG	4 cut(s)	61, 739, 862, 939
CviQI	GTAC	5 cut(s)	250, 313, 697, 749, 924
DdeI	CTNAG	3 cut(s)	267, 458, 893
DinI	GGCGCC	2 cut(s)	294, 342
DpnI	GATC	6 cut(s)	134, 139, 224, 594, 704, 744
DpnII	GATC	6 cut(s)	132, 137, 222, 592, 702, 742
EaeI	YGGCCR	1 cut(s)	843
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
EciI	GGCGGA	4 cut(s)	387, 420, 572, 695
Eco130I	CCWWGG	2 cut(s)	216, 288
Eco88I	CYCGRG	1 cut(s)	567
Eco91I	GGTNACC	1 cut(s)	685
EcoO65I	GGTNACC	1 cut(s)	685
EcoRI	GAATTC	1 cut(s)	448
EcoRII	CCWGG	2 cut(s)	99, 870
EcoT14I	CCWWGG	2 cut(s)	216, 288
EgeI	GGCGCC	2 cut(s)	294, 342
EheI	GGCGCC	2 cut(s)	294, 342
ErhI	CCWWGG	2 cut(s)	216, 288
Esp3I	CGTCTC	1 cut(s)	454
FaeI	CATG	4 cut(s)	64, 742, 865, 942
FaqI	GGGAC	1 cut(s)	835
FatI	CATG	4 cut(s)	60, 738, 861, 938
FauI	CCCGC	3 cut(s)	162, 174, 386
FauNDI	CATATG	2 cut(s)	646, 681
FblI	GTMKAC	2 cut(s)	207, 234
Fnu4HI	GCNGC	8 cut(s)	257, 275, 485, 495, 555, 580, 651, 786
FokI	GGATG	1 cut(s)	839
Fsp4HI	GCNGC	8 cut(s)	257, 275, 485, 495, 555, 580, 651, 786
FspBI	CTAG	1 cut(s)	500
GlaI	GCGC	4 cut(s)	294, 342, 498, 891
GluI	GCNGC	8 cut(s)	257, 275, 485, 495, 555, 580, 651, 786
GsuI	CTGGAG	1 cut(s)	595
HaeII	RGCGCY	3 cut(s)	296, 344, 500
HaeIII	GGCC	6 cut(s)	98, 104, 265, 364, 845, 866
HhaI	GCGC	4 cut(s)	295, 343, 499, 892
Hin1I	GRCGYC	2 cut(s)	293, 341
Hin1II	CATG	4 cut(s)	64, 742, 865, 942
Hin6I	GCGC	4 cut(s)	293, 341, 497, 890
HinP1I	GCGC	4 cut(s)	293, 341, 497, 890
HincII	GTYRAC	3 cut(s)	208, 235, 379
HindII	GTYRAC	3 cut(s)	208, 235, 379
HphI	GGTGA	4 cut(s)	235, 337, 403, 679
Hpy166II	GTNNAC	6 cut(s)	208, 235, 243, 313, 379, 834
Hpy188I	TCNGA	6 cut(s)	88, 119, 137, 142, 270, 459
Hpy188III	TCNNGA	1 cut(s)	184
Hpy8I	GTNNAC	6 cut(s)	208, 235, 243, 313, 379, 834
Hpy99I	CGWCG	7 cut(s)	92, 185, 236, 301, 448, 723, 781
HpyAV	CCTTC	7 cut(s)	157, 349, 395, 598, 664, 770, 877
HpyCH4III	ACNGT	3 cut(s)	229, 383, 465
HpyCH4IV	ACGT	1 cut(s)	699
HpyCH4V	TGCA	4 cut(s)	487, 644, 785, 938
HpyF10VI	GCNNNNNNNGC	7 cut(s)	262, 271, 579, 650, 659, 872, 881
HpyF3I	CTNAG	3 cut(s)	267, 458, 893
HpySE526I	ACGT	1 cut(s)	699
Hsp92I	GRCGYC	2 cut(s)	293, 341
Hsp92II	CATG	4 cut(s)	64, 742, 865, 942
HspAI	GCGC	4 cut(s)	293, 341, 497, 890
KasI	GGCGCC	2 cut(s)	292, 340
Kzo9I	GATC	6 cut(s)	132, 137, 222, 592, 702, 742
LmnI	GCTCC	3 cut(s)	264, 576, 902
Lsp1109I	GCAGC	3 cut(s)	471, 637, 797
LweI	GCATC	3 cut(s)	133, 471, 782
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	1 cut(s)	699
MaeIII	GTNAC	3 cut(s)	409, 685, 911
MalI	GATC	6 cut(s)	134, 139, 224, 594, 704, 744
MbiI	CCGCTC	2 cut(s)	259, 579
MboI	GATC	6 cut(s)	132, 137, 222, 592, 702, 742
MboII	GAAGA	4 cut(s)	76, 481, 707, 727
MlsI	TGGCCA	1 cut(s)	845
MluCI	AATT	3 cut(s)	448, 633, 814
MluNI	TGGCCA	1 cut(s)	845
Mly113I	GGCGCC	2 cut(s)	293, 341
MlyI	GAGTC	7 cut(s)	86, 101, 185, 384, 417, 559, 578
MmeI	TCCRAC	2 cut(s)	111, 367
Mox20I	TGGCCA	1 cut(s)	845
MscI	TGGCCA	1 cut(s)	845
MslI	CAYNNNNRTG	1 cut(s)	839
Msp20I	TGGCCA	1 cut(s)	845
MspR9I	CCNGG	5 cut(s)	101, 320, 691, 793, 872
Mva1269I	GAATGC	1 cut(s)	289
MvaI	CCWGG	2 cut(s)	101, 872
MwoI	GCNNNNNNNGC	7 cut(s)	262, 271, 579, 650, 659, 872, 881
NarI	GGCGCC	2 cut(s)	293, 341
NciI	CCSGG	3 cut(s)	320, 691, 793
NdeI	CATATG	2 cut(s)	646, 681
NdeII	GATC	6 cut(s)	132, 137, 222, 592, 702, 742
NlaIII	CATG	4 cut(s)	64, 742, 865, 942
NlaIV	GGNNCC	2 cut(s)	294, 342
NmeAIII	GCCGAG	1 cut(s)	74
NmuCI	GTSAC	2 cut(s)	409, 685
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 440
PctI	GAATGC	1 cut(s)	289
PfeI	GAWTC	4 cut(s)	5, 120, 454, 932
PinAI	ACCGGT	1 cut(s)	413
PkrI	GCNGC	8 cut(s)	258, 276, 486, 496, 556, 581, 652, 787
Ple19I	CGATCG	1 cut(s)	595
PleI	GAGTC	7 cut(s)	86, 101, 184, 383, 416, 559, 578
PluTI	GGCGCC	2 cut(s)	296, 344
PpsI	GAGTC	7 cut(s)	86, 101, 184, 383, 416, 559, 578
Ppu21I	YACGTR	1 cut(s)	700
Psp6I	CCWGG	2 cut(s)	99, 870
PspEI	GGTNACC	1 cut(s)	685
PspGI	CCWGG	2 cut(s)	99, 870
PspN4I	GGNNCC	2 cut(s)	294, 342
PspPI	GGNCC	2 cut(s)	97, 362
PstI	CTGCAG	2 cut(s)	489, 787
PstNI	CAGNNNCTG	1 cut(s)	751
PvuI	CGATCG	1 cut(s)	595
RsaI	GTAC	5 cut(s)	251, 314, 698, 750, 925
RsaNI	GTAC	5 cut(s)	250, 313, 697, 749, 924
RseI	CAYNNNNRTG	1 cut(s)	839
SalI	GTCGAC	2 cut(s)	206, 233
SatI	GCNGC	8 cut(s)	257, 275, 485, 495, 555, 580, 651, 786
Sau3AI	GATC	6 cut(s)	132, 137, 222, 592, 702, 742
Sau96I	GGNCC	2 cut(s)	97, 362
ScaI	AGTACT	1 cut(s)	251
SchI	GAGTC	7 cut(s)	86, 101, 185, 384, 417, 559, 578
ScrFI	CCNGG	5 cut(s)	101, 320, 691, 793, 872
SetI	ASST	9 cut(s)	360, 434, 614, 702, 750, 762, 899, 921, 929
SfaNI	GCATC	3 cut(s)	133, 471, 782
SfcI	CTRYAG	2 cut(s)	485, 783
SfoI	GGCGCC	2 cut(s)	294, 342
SgrAI	CRCCGGYG	2 cut(s)	301, 413
SmiMI	CAYNNNNRTG	1 cut(s)	839
Sse9I	AATT	3 cut(s)	448, 633, 814
SspDI	GGCGCC	2 cut(s)	292, 340
SspMI	CTAG	1 cut(s)	500
StyD4I	CCNGG	5 cut(s)	99, 318, 689, 791, 870
StyI	CCWWGG	2 cut(s)	216, 288
TaaI	ACNGT	3 cut(s)	229, 383, 465
TaiI	ACGT	1 cut(s)	702
TaqI	TCGA	9 cut(s)	150, 183, 207, 234, 353, 434, 452, 467, 591
TaqII	GACCGA	1 cut(s)	844
TasI	AATT	3 cut(s)	448, 633, 814
TatI	WGTACW	2 cut(s)	249, 312
TauI	GCSGC	5 cut(s)	259, 277, 497, 557, 582
TfiI	GAWTC	4 cut(s)	5, 120, 454, 932
TscAI	CASTG	1 cut(s)	853
TseFI	GTSAC	2 cut(s)	409, 685
TseI	GCWGC	3 cut(s)	484, 650, 785
Tsp45I	GTSAC	2 cut(s)	409, 685
TspDTI	ATGAA	3 cut(s)	77, 528, 727
TspGWI	ACGGA	4 cut(s)	169, 337, 839, 851
TspRI	CASTG	1 cut(s)	853
XapI	RAATTY	1 cut(s)	448
XmiI	GTMKAC	2 cut(s)	207, 234
XspI	CTAG	1 cut(s)	500
ZrmI	AGTACT	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.