Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006012

Physical Location & Seq

Genomic Coordinates Reverse (-)

11832601 .. 11834517

Gene Structure 1917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG139300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGATGCCCTGAAAGGCAAGCCAGCCATGAAGAAATCCTCGTCTATCAACTCCGACGACTCCGCCTGCACCGCCGGCTCCCCCCTCCGCTACCTCTCCCCCATGCGATCCGACGCCGGCGACCCCTCCGAATCCCCGCCCTACGCCTCCCCGGAGCTCTCCCCCCAGAAGCAGCCGCCCCCCGACAACTCCAAGGCCATCATGGCCATCGACAAGTTCACGCAGTACTCCCCCTCCCCCTTGCGGCCTCAGAAACCGCCCGAGAAGGCGCCCTCGCCGCTCGTCATCTACAACAGCAACCGCGCCGCCGGGGAGGACCCCCCGCCGCCCTCGGTGCCCAAGGTGGCCGCTCCTAACGGCGTTCCCTGGCCGGCCGGGGGCGGCGCCGGGGTTGGGAGATCGAGGCGGCCGCCGAGGAGAGCCGATGTGTTGACGACGGCGGCGCTAGGGTTTCGGGTTAGCGAGTTGGTGCTATGCTTGATTTCGTTCTCGGTTATGGCCGCTGATAAAACTCAGGGCTGGAGCGGCGATTCCTTTGATCGCTACAAGGAATACAGGTATTGTTTAGCCGTGACTGTTATTGGATTTGCATATGCTGCTTTTCAAACATACAATCTATCCTACCAGCTAGTCACCGGGAATTATGTGATCAGGCACCACCTTCGTCACCACTTTGATTTCTTCATGGATCAGGTACTGGCATATCTTCTCATTTCAGCATCATCATCGGCAGCCACCAGGGTCGACGACTGGCAATCAAATTGGGGAAAAGATGAGTTCACGGAGATGGCTACTGCTTCAGTCAGCATGGCCTTCCTTGCTTTCATTGCCTTTGCACTAAGCTCCCTGATCTCTGGTTACAACCTATGTACCCATGATTCTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

295

Amino Acids

32.0

Weight (kDa)

8.26

Isoelectric Point (pI)

58.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	143 - 277	1.6e-30	Casparian strip membrane protein domain
MARVEL	PF01284	145 - 281	1.8e-07	Membrane-associating domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36330 AT2G36330 AT5G62820
fragaria_vesca	FvH4_5g05230 FvH4_5g05230
malus_domestica	MD06G1175400.v1.1 MD13G1274000.v1.1 MD14G1182200.v1.1
prunus_persica	Prupe.5G174700_v2.0.a1
pyrus_communis	pycom06g15610 pycom14g15110
rosa_chinensis	RchiOBHm_Chr4g0422081 RchiOBHm_Chr7g0193681
rosa_laevigata	RLG00000004252 RLG00000009743
rosa_roxburghii	Rroxscaffold_1G00017200 Rroxscaffold_3G00261910 Rroxscaffold_4G00285190
rosa_rugosa	Rorug07G0011300
rosa_samantha	Rh2AG505200 Rh4BG244400 Rh4CG255200 Rh7AG138000 Rh7BG138200 Rh7CG141900 Rh7DG139300
rosa_wichuraiana	Rw7G011750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	268, 334, 383, 654
AccBSI	CCGCTC	3 cut(s)	280, 350, 525
AccI	GTMKAC	1 cut(s)	744
AccII	CGCG	1 cut(s)	303
AclWI	GGATC	2 cut(s)	102, 696
AcoI	YGGCCR	6 cut(s)	204, 345, 368, 372, 407, 498
AcuI	CTGAAG	1 cut(s)	783
AcyI	GRCGYC	3 cut(s)	114, 269, 384
AfaI	GTAC	3 cut(s)	227, 696, 871
AfiI	CCNNNNNNNGG	3 cut(s)	243, 377, 393
AgsI	TTSAA	1 cut(s)	605
AjnI	CCWGG	2 cut(s)	365, 737
AluBI	AGCT	3 cut(s)	157, 628, 843
AluI	AGCT	3 cut(s)	157, 628, 843
Alw21I	GWGCWC	1 cut(s)	159
AlwI	GGATC	2 cut(s)	102, 696
AlwNI	CAGNNNCTG	1 cut(s)	697
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	9 cut(s)	195, 204, 245, 345, 368, 372, 407, 498, 810
ApeKI	GCWGC	3 cut(s)	172, 596, 731
AspLEI	GCGC	4 cut(s)	271, 305, 386, 445
AspS9I	GGNCC	1 cut(s)	316
AsuC2I	CCSGG	5 cut(s)	152, 310, 376, 388, 637
AsuHPI	GGTGA	2 cut(s)	625, 659
AvaI	CYCGRG	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	316
BaeGI	GKGCMC	1 cut(s)	339
BaeI	ACNNNNGTAYC	2 cut(s)	853, 886
BalI	TGGCCA	1 cut(s)	206
BanI	GGYRCC	4 cut(s)	268, 334, 383, 654
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	3 cut(s)	184, 583, 743
BccI	CCATC	3 cut(s)	206, 215, 781
BceAI	ACGGC	3 cut(s)	373, 453, 554
BcgI	CGANNNNNNTGC	4 cut(s)	644, 678, 708, 742
BciT130I	CCWGG	2 cut(s)	367, 739
BclI	TGATCA	1 cut(s)	648
BcnI	CCSGG	5 cut(s)	152, 310, 376, 388, 637
BfaI	CTAG	2 cut(s)	446, 629
BfoI	RGCGCY	3 cut(s)	272, 387, 446
BglI	GCCNNNNNGGC	1 cut(s)	203
BmcAI	AGTACT	1 cut(s)	227
Bme1390I	CCNGG	7 cut(s)	152, 310, 367, 376, 388, 637, 739
Bme18I	GGWCC	1 cut(s)	316
BmeT110I	CYCGRG	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	316
BmiI	GGNNCC	6 cut(s)	79, 270, 318, 336, 385, 656
BmrFI	CCNGG	7 cut(s)	152, 310, 367, 376, 388, 637, 739
BmsI	GCATC	1 cut(s)	728
BpmI	CTGGAG	1 cut(s)	541
BpuMI	CCSGG	5 cut(s)	152, 310, 376, 388, 637
BsaAI	YACGTR	1 cut(s)	885
BsaHI	GRCGYC	3 cut(s)	114, 269, 384
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	3 cut(s)	243, 377, 393
Bse118I	RCCGGY	3 cut(s)	74, 116, 370
Bse1I	ACTGG	2 cut(s)	702, 755
Bse3DI	GCAATG	1 cut(s)	825
BseBI	CCWGG	2 cut(s)	367, 739
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	3 cut(s)	243, 377, 393
BseMI	GCAATG	1 cut(s)	825
BseMII	CTCAG	2 cut(s)	263, 527
BseNI	ACTGG	2 cut(s)	702, 755
BseRI	GAGGAG	1 cut(s)	430
BseSI	GKGCMC	1 cut(s)	339
BseX3I	CGGCCG	2 cut(s)	372, 407
BseXI	GCAGC	3 cut(s)	184, 583, 743
BsgI	GTGCAG	1 cut(s)	52
Bsh1236I	CGCG	1 cut(s)	303
Bsh1285I	CGRYCG	2 cut(s)	375, 410
BshFI	GGCC	9 cut(s)	197, 206, 247, 347, 370, 374, 409, 500, 812
BshNI	GGYRCC	4 cut(s)	268, 334, 383, 654
BsiEI	CGRYCG	2 cut(s)	375, 410
BsiHKAI	GWGCWC	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	8 cut(s)	75, 117, 152, 309, 371, 375, 387, 636
BslI	CCNNNNNNNGG	3 cut(s)	243, 377, 393
BsnI	GGCC	9 cut(s)	197, 206, 247, 347, 370, 374, 409, 500, 812
BsoBI	CYCGRG	1 cut(s)	260
Bsp1286I	GDGCHC	2 cut(s)	159, 339
Bsp143I	GATC	6 cut(s)	107, 398, 538, 648, 688, 849
BspANI	GGCC	9 cut(s)	197, 206, 247, 347, 370, 374, 409, 500, 812
BspCNI	CTCAG	2 cut(s)	262, 526
BspFNI	CGCG	1 cut(s)	303
BspLI	GGNNCC	6 cut(s)	79, 270, 318, 336, 385, 656
BspPI	GGATC	2 cut(s)	102, 696
BspT107I	GGYRCC	4 cut(s)	268, 334, 383, 654
BsrBI	CCGCTC	3 cut(s)	280, 350, 525
BsrDI	GCAATG	1 cut(s)	825
BsrFI	RCCGGY	3 cut(s)	74, 116, 370
BsrI	ACTGG	2 cut(s)	702, 755
BssAI	RCCGGY	3 cut(s)	74, 116, 370
BssMI	GATC	6 cut(s)	107, 398, 538, 648, 688, 849
BssNI	GRCGYC	3 cut(s)	114, 269, 384
BssT1I	CCWWGG	2 cut(s)	192, 339
Bst2UI	CCWGG	2 cut(s)	367, 739
Bst4CI	ACNGT	1 cut(s)	577
BstACI	GRCGYC	3 cut(s)	114, 269, 384
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstBAI	YACGTR	1 cut(s)	885
BstC8I	GCNNGC	6 cut(s)	20, 24, 67, 76, 118, 372
BstDEI	CTNAG	3 cut(s)	249, 513, 839
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	303
BstH2I	RGCGCY	3 cut(s)	272, 387, 446
BstHHI	GCGC	4 cut(s)	271, 305, 386, 445
BstKTI	GATC	6 cut(s)	110, 401, 541, 651, 691, 852
BstMBI	GATC	6 cut(s)	107, 398, 538, 648, 688, 849
BstMCI	CGRYCG	2 cut(s)	375, 410
BstMWI	GCNNNNNNNGC	9 cut(s)	71, 75, 203, 277, 334, 525, 596, 818, 827
BstNI	CCWGG	2 cut(s)	367, 739
BstSCI	CCNGG	7 cut(s)	150, 308, 365, 374, 386, 635, 737
BstSLI	GKGCMC	1 cut(s)	339
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	3 cut(s)	184, 583, 743
BstZI	CGGCCG	2 cut(s)	372, 407
BsuRI	GGCC	9 cut(s)	197, 206, 247, 347, 370, 374, 409, 500, 812
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	6 cut(s)	20, 24, 67, 76, 118, 372
CaiI	CAGNNNCTG	1 cut(s)	697
CciNI	GCGGCCGC	1 cut(s)	407
CfoI	GCGC	4 cut(s)	271, 305, 386, 445
Cfr10I	RCCGGY	3 cut(s)	74, 116, 370
Cfr13I	GGNCC	1 cut(s)	316
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	3 cut(s)	226, 695, 870
CviAII	CATG	6 cut(s)	28, 103, 202, 685, 808, 875
CviQI	GTAC	3 cut(s)	226, 695, 870
DdeI	CTNAG	3 cut(s)	249, 513, 839
DinI	GGCGCC	2 cut(s)	270, 385
DpnI	GATC	6 cut(s)	109, 400, 540, 650, 690, 851
DpnII	GATC	6 cut(s)	107, 398, 538, 648, 688, 849
EaeI	YGGCCR	6 cut(s)	204, 345, 368, 372, 407, 498
EagI	CGGCCG	2 cut(s)	372, 407
EciI	GGCGGA	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	157
EclXI	CGGCCG	2 cut(s)	372, 407
Eco130I	CCWWGG	2 cut(s)	192, 339
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	316
Eco52I	CGGCCG	2 cut(s)	372, 407
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	783
Eco88I	CYCGRG	1 cut(s)	260
EcoICRI	GAGCTC	1 cut(s)	157
EcoO109I	RGGNCCY	1 cut(s)	316
EcoRII	CCWGG	2 cut(s)	365, 737
EcoT14I	CCWWGG	2 cut(s)	192, 339
EcoT38I	GRGCYC	1 cut(s)	159
EgeI	GGCGCC	2 cut(s)	270, 385
EheI	GGCGCC	2 cut(s)	270, 385
ErhI	CCWWGG	2 cut(s)	192, 339
FaeI	CATG	6 cut(s)	31, 106, 205, 688, 811, 878
FatI	CATG	6 cut(s)	27, 102, 201, 684, 807, 874
FauI	CCCGC	2 cut(s)	144, 330
FauNDI	CATATG	1 cut(s)	592
FbaI	TGATCA	1 cut(s)	648
FblI	GTMKAC	1 cut(s)	744
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	159
FseI	GGCCGGCC	1 cut(s)	374
FspBI	CTAG	2 cut(s)	446, 629
GlaI	GCGC	4 cut(s)	270, 304, 385, 444
GsuI	CTGGAG	1 cut(s)	541
HaeII	RGCGCY	3 cut(s)	272, 387, 446
HaeIII	GGCC	9 cut(s)	197, 206, 247, 347, 370, 374, 409, 500, 812
HapII	CCGG	8 cut(s)	75, 117, 152, 309, 371, 375, 387, 636
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	4 cut(s)	271, 305, 386, 445
Hin1I	GRCGYC	3 cut(s)	114, 269, 384
Hin1II	CATG	6 cut(s)	31, 106, 205, 688, 811, 878
Hin6I	GCGC	4 cut(s)	269, 303, 384, 443
HinP1I	GCGC	4 cut(s)	269, 303, 384, 443
HincII	GTYRAC	2 cut(s)	432, 745
HindII	GTYRAC	2 cut(s)	432, 745
HinfI	GANTC	4 cut(s)	59, 131, 530, 878
HpaII	CCGG	8 cut(s)	75, 117, 152, 309, 371, 375, 387, 636
HphI	GGTGA	2 cut(s)	625, 659
Hpy166II	GTNNAC	4 cut(s)	219, 432, 745, 780
Hpy188I	TCNGA	4 cut(s)	55, 112, 130, 252
Hpy8I	GTNNAC	4 cut(s)	219, 432, 745, 780
Hpy99I	CGWCG	4 cut(s)	59, 116, 439, 749
HpyAV	CCTTC	3 cut(s)	259, 671, 823
HpyCH4III	ACNGT	1 cut(s)	577
HpyCH4IV	ACGT	1 cut(s)	884
HpyCH4V	TGCA	3 cut(s)	69, 590, 836
HpyF10VI	GCNNNNNNNGC	9 cut(s)	71, 75, 203, 277, 334, 525, 596, 818, 827
HpyF3I	CTNAG	3 cut(s)	249, 513, 839
HpySE526I	ACGT	1 cut(s)	884
Hsp92I	GRCGYC	3 cut(s)	114, 269, 384
Hsp92II	CATG	6 cut(s)	31, 106, 205, 688, 811, 878
HspAI	GCGC	4 cut(s)	269, 303, 384, 443
KasI	GGCGCC	2 cut(s)	268, 383
KroI	GCCGGC	3 cut(s)	74, 116, 370
KroNI	GCCGGC	3 cut(s)	76, 118, 372
Ksp22I	TGATCA	1 cut(s)	648
Kzo9I	GATC	6 cut(s)	107, 398, 538, 648, 688, 849
LmnI	GCTCC	5 cut(s)	83, 154, 355, 522, 848
Lsp1109I	GCAGC	3 cut(s)	184, 583, 743
LweI	GCATC	1 cut(s)	728
MaeI	CTAG	2 cut(s)	446, 629
MaeII	ACGT	1 cut(s)	884
MaeIII	GTNAC	4 cut(s)	571, 631, 665, 857
MalI	GATC	6 cut(s)	109, 400, 540, 650, 690, 851
MbiI	CCGCTC	3 cut(s)	280, 350, 525
MboI	GATC	6 cut(s)	107, 398, 538, 648, 688, 849
MboII	GAAGA	3 cut(s)	43, 673, 698
MhlI	GDGCHC	2 cut(s)	159, 339
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	2 cut(s)	640, 760
MluNI	TGGCCA	1 cut(s)	206
Mly113I	GGCGCC	2 cut(s)	269, 384
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	2 cut(s)	78, 135
Mox20I	TGGCCA	1 cut(s)	206
MreI	CGCCGGCG	1 cut(s)	116
MroNI	GCCGGC	3 cut(s)	74, 116, 370
MscI	TGGCCA	1 cut(s)	206
MslI	CAYNNNNRTG	1 cut(s)	785
Msp20I	TGGCCA	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	8 cut(s)	75, 117, 152, 309, 371, 375, 387, 636
MspR9I	CCNGG	7 cut(s)	152, 310, 367, 376, 388, 637, 739
MvaI	CCWGG	2 cut(s)	367, 739
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	9 cut(s)	71, 75, 203, 277, 334, 525, 596, 818, 827
NaeI	GCCGGC	3 cut(s)	76, 118, 372
NarI	GGCGCC	2 cut(s)	269, 384
NciI	CCSGG	5 cut(s)	152, 310, 376, 388, 637
NdeI	CATATG	1 cut(s)	592
NdeII	GATC	6 cut(s)	107, 398, 538, 648, 688, 849
NgoMIV	GCCGGC	3 cut(s)	74, 116, 370
NlaIII	CATG	6 cut(s)	31, 106, 205, 688, 811, 878
NlaIV	GGNNCC	6 cut(s)	79, 270, 318, 336, 385, 656
NmeAIII	GCCGAG	1 cut(s)	438
NmuCI	GTSAC	3 cut(s)	571, 631, 665
NotI	GCGGCCGC	1 cut(s)	407
PdiI	GCCGGC	3 cut(s)	76, 118, 372
PfeI	GAWTC	3 cut(s)	131, 530, 878
PleI	GAGTC	1 cut(s)	53
PluTI	GGCGCC	2 cut(s)	272, 387
PpsI	GAGTC	1 cut(s)	53
Ppu21I	YACGTR	1 cut(s)	885
PpuMI	RGGWCCY	1 cut(s)	316
Psp124BI	GAGCTC	1 cut(s)	159
Psp5II	RGGWCCY	1 cut(s)	316
Psp6I	CCWGG	2 cut(s)	365, 737
PspGI	CCWGG	2 cut(s)	365, 737
PspN4I	GGNNCC	6 cut(s)	79, 270, 318, 336, 385, 656
PspPI	GGNCC	1 cut(s)	316
PspPPI	RGGWCCY	1 cut(s)	316
PstNI	CAGNNNCTG	1 cut(s)	697
RigI	GGCCGGCC	1 cut(s)	374
RsaI	GTAC	3 cut(s)	227, 696, 871
RsaNI	GTAC	3 cut(s)	226, 695, 870
RseI	CAYNNNNRTG	1 cut(s)	785
SacI	GAGCTC	1 cut(s)	159
SalI	GTCGAC	1 cut(s)	743
Sau3AI	GATC	6 cut(s)	107, 398, 538, 648, 688, 849
Sau96I	GGNCC	1 cut(s)	316
ScaI	AGTACT	1 cut(s)	227
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	7 cut(s)	152, 310, 367, 376, 388, 637, 739
SduI	GDGCHC	2 cut(s)	159, 339
SfaNI	GCATC	1 cut(s)	728
SfiI	GGCCNNNNNGGCC	1 cut(s)	203
SfoI	GGCGCC	2 cut(s)	270, 385
SgrAI	CRCCGGYG	1 cut(s)	116
SinI	GGWCC	1 cut(s)	316
SmiMI	CAYNNNNRTG	1 cut(s)	785
Sse9I	AATT	2 cut(s)	640, 760
SspDI	GGCGCC	2 cut(s)	268, 383
SspMI	CTAG	2 cut(s)	446, 629
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	7 cut(s)	150, 308, 365, 374, 386, 635, 737
StyI	CCWWGG	2 cut(s)	192, 339
TaaI	ACNGT	1 cut(s)	577
TaiI	ACGT	1 cut(s)	887
TaqI	TCGA	3 cut(s)	210, 401, 744
TasI	AATT	2 cut(s)	640, 760
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	3 cut(s)	131, 530, 878
TseFI	GTSAC	3 cut(s)	571, 631, 665
TseI	GCWGC	3 cut(s)	172, 596, 731
Tsp45I	GTSAC	3 cut(s)	571, 631, 665
TspDTI	ATGAA	3 cut(s)	44, 673, 814
TspGWI	ACGGA	1 cut(s)	797
VpaK11BI	GGWCC	1 cut(s)	316
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	744
XspI	CTAG	2 cut(s)	446, 629
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.