Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006012

Physical Location & Seq

Genomic Coordinates Reverse (-)

25223727 .. 25225052

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G62820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGAAGATGAAGCGGACTGCGTCATCGAACTCGGAAGCACAGAGTTACAACGAATCACCTCACTCTCCTCTTCGATTTCATTCTCCGTTATCAGATGCCGGAGATTTACCTGAAAGCCGTTACGTTTCTCCTGAGGGATCTCCGTTCAAAATCGAGAATCCGAAGTCGATCGTAGCTGGTAATAAGCTCACACAGTTTTCGCCTCTTCCCTCGCCGATTCCGCCTCCTCCTCCTCAGTTTCCGCCGCCGCGGCGTCAGAGGAATGCGAGAGTTCCGATGAATTCTTCTTCGGATAAGTCTCCGTCGTCTATGGTGGTGCACAATAGCTGGGTGAGAGAAGACGGTGGACAAACTACGACGAGAAAAGCTGGAGCTCCGATAAACGGAGAAGAATCGACGAGGACGACGGTGAACAGAGCGAGAGGAGACGATTTAGTAAGTTTGACGGCGCTAGGGTTTAGAATTACCGAAGTAATTTTGTGTGTGATTTCGTTTTCAATCATGGCGGCTGATAAAACTCAAGGATGGAGTGGCGATTCTTATGATCGCTACAAAGAGTACAGGTATTGTTTGGCTGTGAACGTTATAGCATTCGTTTACTCTGCATTTGAAGCTTGTGACGCTGCTTGCTACATCGCAAAAGAGAGTTATATGATCAACTGTGGATTTCATGACTTATTCGTTTTCTCCATGGATCAACTTCTTGCATATCTTCTAATGTCGGCTTCTTCATGTGCTGCGACTCGAGTTGATGATTGGGTATCTAATTGGGGCAAAGATGAGTTTACTCAAATGGCAACCGCTTCCATCGCGGTTTCCTTTTTAGCGTTTGGAGCGTTCGCGGTCAGCGCGTTGATTTCTTCTTACAGGCTCTTCACTCATGCTTCCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

297

Amino Acids

32.61

Weight (kDa)

6.95

Isoelectric Point (pI)

55.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	146 - 277	5e-30	Casparian strip membrane protein domain
MARVEL	PF01284	150 - 285	1.8e-08	Membrane-associating domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36330 AT2G36330 AT5G62820
fragaria_vesca	FvH4_5g05230 FvH4_5g05230
malus_domestica	MD06G1175400.v1.1 MD13G1274000.v1.1 MD14G1182200.v1.1
prunus_persica	Prupe.5G174700_v2.0.a1
pyrus_communis	pycom06g15610 pycom14g15110
rosa_chinensis	RchiOBHm_Chr4g0422081 RchiOBHm_Chr7g0193681
rosa_laevigata	RLG00000004252 RLG00000009743
rosa_roxburghii	Rroxscaffold_1G00017200 Rroxscaffold_3G00261910 Rroxscaffold_4G00285190
rosa_rugosa	Rorug07G0011300
rosa_samantha	Rh2AG505200 Rh4BG244400 Rh4CG255200 Rh7AG138000 Rh7BG138200 Rh7CG141900 Rh7DG139300
rosa_wichuraiana	Rw7G011750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	250, 812, 842, 851
AclI	AACGTT	1 cut(s)	582
AclWI	GGATC	2 cut(s)	145, 702
AcsI	RAATTY	1 cut(s)	280
AcyI	GRCGYC	1 cut(s)	253
AfaI	GTAC	1 cut(s)	560
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	3 cut(s)	148, 498, 611
AluBI	AGCT	6 cut(s)	176, 187, 327, 368, 374, 614
AluI	AGCT	6 cut(s)	176, 187, 327, 368, 374, 614
Alw21I	GWGCWC	2 cut(s)	321, 376
Alw26I	GTCTC	2 cut(s)	303, 420
Alw44I	GTGCAC	1 cut(s)	317
AlwI	GGATC	2 cut(s)	145, 702
Ama87I	CYCGRG	1 cut(s)	744
ApaLI	GTGCAC	1 cut(s)	317
ApeKI	GCWGC	2 cut(s)	623, 737
ApoI	RAATTY	1 cut(s)	280
AspLEI	GCGC	2 cut(s)	451, 851
AsuHPI	GGTGA	3 cut(s)	48, 343, 421
AvaI	CYCGRG	1 cut(s)	744
AxyI	CCTNAGG	1 cut(s)	132
BaeGI	GKGCMC	1 cut(s)	321
BanII	GRGCYC	1 cut(s)	376
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	2 cut(s)	321, 376
BbvI	GCAGC	2 cut(s)	610, 724
BccI	CCATC	2 cut(s)	519, 815
BceAI	ACGGC	2 cut(s)	102, 462
BclI	TGATCA	1 cut(s)	654
BcoDI	GTCTC	2 cut(s)	303, 420
BfaI	CTAG	2 cut(s)	452, 892
BfoI	RGCGCY	1 cut(s)	452
BglI	GCCNNNNNGGC	1 cut(s)	250
BisI	GCNGC	6 cut(s)	245, 248, 251, 507, 624, 738
BlsI	GCNGC	6 cut(s)	246, 249, 252, 508, 625, 739
BmeT110I	CYCGRG	1 cut(s)	744
BmsI	GCATC	1 cut(s)	85
BpiI	GAAGAC	1 cut(s)	345
BpmI	CTGGAG	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	504
BsaHI	GRCGYC	1 cut(s)	253
BsaJI	CCNNGG	2 cut(s)	248, 690
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse21I	CCTNAGG	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	248, 690
BseGI	GGATG	1 cut(s)	530
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMII	CTCAG	2 cut(s)	123, 248
BseRI	GAGGAG	5 cut(s)	57, 216, 219, 222, 438
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	2 cut(s)	610, 724
BseYI	CCCAGC	1 cut(s)	327
Bsh1236I	CGCG	4 cut(s)	250, 812, 842, 851
Bsh1285I	CGRYCG	1 cut(s)	171
BsiEI	CGRYCG	1 cut(s)	171
BsiHKAI	GWGCWC	2 cut(s)	321, 376
BsiHKCI	CYCGRG	1 cut(s)	744
BsiSI	CCGG	1 cut(s)	99
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	2 cut(s)	303, 420
BsmBI	CGTCTC	1 cut(s)	420
BsmI	GAATGC	2 cut(s)	268, 590
BsoBI	CYCGRG	1 cut(s)	744
Bsp1286I	GDGCHC	2 cut(s)	321, 376
Bsp143I	GATC	5 cut(s)	137, 168, 544, 654, 694
Bsp19I	CCATGG	1 cut(s)	690
BspCNI	CTCAG	2 cut(s)	124, 247
BspFNI	CGCG	4 cut(s)	250, 812, 842, 851
BspHI	TCATGA	1 cut(s)	670
BspPI	GGATC	2 cut(s)	145, 702
BspQI	GCTCTTC	1 cut(s)	878
BssECI	CCNNGG	2 cut(s)	248, 690
BssMI	GATC	5 cut(s)	137, 168, 544, 654, 694
BssNI	GRCGYC	1 cut(s)	253
BssT1I	CCWWGG	1 cut(s)	690
Bst4CI	ACNGT	4 cut(s)	195, 344, 409, 662
Bst6I	CTCTTC	3 cut(s)	75, 210, 878
BstACI	GRCGYC	1 cut(s)	253
BstC8I	GCNNGC	1 cut(s)	628
BstDEI	CTNAG	2 cut(s)	132, 234
BstDSI	CCRYGG	2 cut(s)	248, 690
BstF5I	GGATG	1 cut(s)	530
BstFNI	CGCG	4 cut(s)	250, 812, 842, 851
BstH2I	RGCGCY	1 cut(s)	452
BstHHI	GCGC	2 cut(s)	451, 851
BstKTI	GATC	5 cut(s)	140, 171, 547, 657, 697
BstMAI	GTCTC	2 cut(s)	303, 420
BstMBI	GATC	5 cut(s)	137, 168, 544, 654, 694
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	7 cut(s)	220, 250, 611, 620, 809, 833, 848
BstSLI	GKGCMC	1 cut(s)	321
BstUI	CGCG	4 cut(s)	250, 812, 842, 851
BstV1I	GCAGC	2 cut(s)	610, 724
BstV2I	GAAGAC	1 cut(s)	345
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
Bsu36I	CCTNAGG	1 cut(s)	132
BtgI	CCRYGG	2 cut(s)	248, 690
BtgZI	GCGATG	2 cut(s)	619, 793
BtsCI	GGATG	1 cut(s)	530
Cac8I	GCNNGC	1 cut(s)	628
CciI	TCATGA	1 cut(s)	670
CfoI	GCGC	2 cut(s)	451, 851
Cfr42I	CCGCGG	1 cut(s)	251
CseI	GACGC	3 cut(s)	9, 242, 629
Csp6I	GTAC	1 cut(s)	559
CviAII	CATG	5 cut(s)	502, 671, 691, 732, 881
CviQI	GTAC	1 cut(s)	559
DdeI	CTNAG	2 cut(s)	132, 234
DpnI	GATC	5 cut(s)	139, 170, 546, 656, 696
DpnII	GATC	5 cut(s)	137, 168, 544, 654, 694
Eam1104I	CTCTTC	3 cut(s)	75, 210, 878
EarI	CTCTTC	3 cut(s)	75, 210, 878
EciI	GGCGGA	2 cut(s)	210, 231
Ecl136II	GAGCTC	1 cut(s)	374
Eco130I	CCWWGG	1 cut(s)	690
Eco24I	GRGCYC	1 cut(s)	376
Eco53kI	GAGCTC	1 cut(s)	374
Eco81I	CCTNAGG	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	744
EcoICRI	GAGCTC	1 cut(s)	374
EcoRI	GAATTC	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	690
EcoT38I	GRGCYC	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	690
Esp3I	CGTCTC	1 cut(s)	420
FaeI	CATG	5 cut(s)	505, 674, 694, 735, 884
FatI	CATG	5 cut(s)	501, 670, 690, 731, 880
FbaI	TGATCA	1 cut(s)	654
Fnu4HI	GCNGC	6 cut(s)	245, 248, 251, 507, 624, 738
FokI	GGATG	1 cut(s)	537
FriOI	GRGCYC	1 cut(s)	376
Fsp4HI	GCNGC	6 cut(s)	245, 248, 251, 507, 624, 738
FspBI	CTAG	2 cut(s)	452, 892
GlaI	GCGC	2 cut(s)	450, 850
GluI	GCNGC	6 cut(s)	245, 248, 251, 507, 624, 738
GsaI	CCCAGC	1 cut(s)	331
GsuI	CTGGAG	1 cut(s)	390
HaeII	RGCGCY	1 cut(s)	452
HapII	CCGG	1 cut(s)	99
HgaI	GACGC	3 cut(s)	9, 242, 629
HhaI	GCGC	2 cut(s)	451, 851
Hin1I	GRCGYC	1 cut(s)	253
Hin1II	CATG	5 cut(s)	505, 674, 694, 735, 884
Hin6I	GCGC	2 cut(s)	449, 849
HinP1I	GCGC	2 cut(s)	449, 849
HindIII	AAGCTT	1 cut(s)	612
HinfI	GANTC	6 cut(s)	53, 157, 217, 392, 536, 742
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	3 cut(s)	48, 343, 421
Hpy166II	GTNNAC	6 cut(s)	319, 347, 412, 580, 598, 786
Hpy188I	TCNGA	7 cut(s)	34, 94, 162, 258, 276, 292, 378
Hpy188III	TCNNGA	3 cut(s)	131, 154, 671
Hpy8I	GTNNAC	6 cut(s)	319, 347, 412, 580, 598, 786
Hpy99I	CGWCG	4 cut(s)	307, 361, 400, 409
HpyCH4III	ACNGT	4 cut(s)	195, 344, 409, 662
HpyCH4IV	ACGT	2 cut(s)	123, 582
HpyCH4V	TGCA	3 cut(s)	319, 605, 707
HpyF10VI	GCNNNNNNNGC	7 cut(s)	220, 250, 611, 620, 809, 833, 848
HpyF3I	CTNAG	2 cut(s)	132, 234
HpySE526I	ACGT	2 cut(s)	123, 582
Hsp92I	GRCGYC	1 cut(s)	253
Hsp92II	CATG	5 cut(s)	505, 674, 694, 735, 884
HspAI	GCGC	2 cut(s)	449, 849
Ksp22I	TGATCA	1 cut(s)	654
KspI	CCGCGG	1 cut(s)	251
Kzo9I	GATC	5 cut(s)	137, 168, 544, 654, 694
LguI	GCTCTTC	1 cut(s)	878
LmnI	GCTCC	3 cut(s)	371, 379, 833
LpnPI	CCDG	8 cut(s)	112, 123, 144, 162, 313, 354, 547, 853
Lsp1109I	GCAGC	2 cut(s)	610, 724
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	2 cut(s)	452, 892
MaeII	ACGT	2 cut(s)	123, 582
MaeIII	GTNAC	3 cut(s)	44, 119, 617
MalI	GATC	5 cut(s)	139, 170, 546, 656, 696
MboI	GATC	5 cut(s)	137, 168, 544, 654, 694
MflI	RGATCY	1 cut(s)	137
MhlI	GDGCHC	2 cut(s)	321, 376
MluCI	AATT	4 cut(s)	280, 462, 474, 766
MlyI	GAGTC	1 cut(s)	736
MspA1I	CMGCKG	1 cut(s)	250
MspI	CCGG	1 cut(s)	99
Mva1269I	GAATGC	2 cut(s)	268, 590
MvnI	CGCG	4 cut(s)	250, 812, 842, 851
MwoI	GCNNNNNNNGC	7 cut(s)	220, 250, 611, 620, 809, 833, 848
NcoI	CCATGG	1 cut(s)	690
NdeII	GATC	5 cut(s)	137, 168, 544, 654, 694
NlaIII	CATG	5 cut(s)	505, 674, 694, 735, 884
NmuCI	GTSAC	1 cut(s)	617
PaeR7I	CTCGAG	1 cut(s)	744
PagI	TCATGA	1 cut(s)	670
PciSI	GCTCTTC	1 cut(s)	878
PcsI	WCGNNNNNNNCGW	1 cut(s)	401
PctI	GAATGC	2 cut(s)	268, 590
PfeI	GAWTC	5 cut(s)	53, 157, 217, 392, 536
PflFI	GACNNNGTC	1 cut(s)	19
PkrI	GCNGC	6 cut(s)	246, 249, 252, 508, 625, 739
Ple19I	CGATCG	1 cut(s)	171
PleI	GAGTC	1 cut(s)	736
PpsI	GAGTC	1 cut(s)	736
Psp124BI	GAGCTC	1 cut(s)	376
Psp1406I	AACGTT	1 cut(s)	582
PspFI	CCCAGC	1 cut(s)	327
PspXI	VCTCGAGB	1 cut(s)	744
PsuI	RGATCY	1 cut(s)	137
PsyI	GACNNNGTC	1 cut(s)	19
PvuI	CGATCG	1 cut(s)	171
RsaI	GTAC	1 cut(s)	560
RsaNI	GTAC	1 cut(s)	559
SacI	GAGCTC	1 cut(s)	376
SacII	CCGCGG	1 cut(s)	251
SapI	GCTCTTC	1 cut(s)	878
SatI	GCNGC	6 cut(s)	245, 248, 251, 507, 624, 738
Sau3AI	GATC	5 cut(s)	137, 168, 544, 654, 694
SchI	GAGTC	1 cut(s)	736
SduI	GDGCHC	2 cut(s)	321, 376
SfaNI	GCATC	1 cut(s)	85
Sfr274I	CTCGAG	1 cut(s)	744
Sfr303I	CCGCGG	1 cut(s)	251
SgrBI	CCGCGG	1 cut(s)	251
SlaI	CTCGAG	1 cut(s)	744
SmlI	CTYRAG	2 cut(s)	519, 744
SmoI	CTYRAG	2 cut(s)	519, 744
Sse9I	AATT	4 cut(s)	280, 462, 474, 766
SspMI	CTAG	2 cut(s)	452, 892
SstI	GAGCTC	1 cut(s)	376
StyI	CCWWGG	1 cut(s)	690
TaaI	ACNGT	4 cut(s)	195, 344, 409, 662
TaiI	ACGT	2 cut(s)	126, 585
TaqI	TCGA	6 cut(s)	26, 73, 153, 167, 395, 745
TasI	AATT	4 cut(s)	280, 462, 474, 766
TatI	WGTACW	1 cut(s)	558
TauI	GCSGC	4 cut(s)	247, 250, 253, 509
TfiI	GAWTC	5 cut(s)	53, 157, 217, 392, 536
TseFI	GTSAC	1 cut(s)	617
TseI	GCWGC	2 cut(s)	623, 737
Tsp45I	GTSAC	1 cut(s)	617
TspDTI	ATGAA	6 cut(s)	17, 23, 68, 293, 659, 720
TspGWI	ACGGA	4 cut(s)	75, 132, 291, 399
Tth111I	GACNNNGTC	1 cut(s)	19
VneI	GTGCAC	1 cut(s)	317
XapI	RAATTY	1 cut(s)	280
XhoI	CTCGAG	1 cut(s)	744
XspI	CTAG	2 cut(s)	452, 892

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.