Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006012

Physical Location & Seq

Genomic Coordinates Forward (+)

41140657 .. 41143218

Gene Structure 2562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG244400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGAGGACGGCAAGGCAGCCCCTAAGGAGGGACCTTGTGGTGAAGACGGCGGCGCTAGGATTTCAGGGTATCGAGTTGTTGCCGTGCTTGATTTTGGTCTCATTATGGCCGCTAATAAAACTCATGGCTGGGTTGGCGACTCCTTTGATCGCTACAAGGAATATAGGTTAGTGAAAGAGAGTATTGGCGTTGATCCAGAACATCTTTTTGGGAACAAGCAGAGCATCTCAATGCTTCCAAGTAAGATTAAGAGTGGAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

87

Amino Acids

9.4

Weight (kDa)

6.72

Isoelectric Point (pI)

26.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36330 AT2G36330 AT5G62820
fragaria_vesca	FvH4_5g05230 FvH4_5g05230
malus_domestica	MD06G1175400.v1.1 MD13G1274000.v1.1 MD14G1182200.v1.1
prunus_persica	Prupe.5G174700_v2.0.a1
pyrus_communis	pycom06g15610 pycom14g15110
rosa_chinensis	RchiOBHm_Chr4g0422081 RchiOBHm_Chr7g0193681
rosa_laevigata	RLG00000004252 RLG00000009743
rosa_roxburghii	Rroxscaffold_1G00017200 Rroxscaffold_3G00261910 Rroxscaffold_4G00285190
rosa_rugosa	Rorug07G0011300
rosa_samantha	Rh2AG505200 Rh4BG244400 Rh4CG255200 Rh7AG138000 Rh7BG138200 Rh7CG141900 Rh7DG139300
rosa_wichuraiana	Rw7G011750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	51, 111
AclWI	GGATC	1 cut(s)	188
AcoI	YGGCCR	1 cut(s)	108
AfiI	CCNNNNNNNGG	2 cut(s)	28, 29
AjuI	GAANNNNNNNTTGG	2 cut(s)	192, 224
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	188
AoxI	GGCC	1 cut(s)	108
ApeKI	GCWGC	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	32
AxyI	CCTNAGG	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	29
BceAI	ACGGC	3 cut(s)	25, 64, 68
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	57
BfoI	RGCGCY	1 cut(s)	57
BisI	GCNGC	3 cut(s)	18, 52, 111
BlsI	GCNGC	3 cut(s)	19, 53, 112
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	33
BmsI	GCATC	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 29
Bse21I	CCTNAGG	1 cut(s)	24
BseLI	CCNNNNNNNGG	2 cut(s)	28, 29
BseXI	GCAGC	1 cut(s)	29
BseYI	CCCAGC	1 cut(s)	129
BshFI	GGCC	1 cut(s)	110
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	2 cut(s)	28, 29
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	110
Bso31I	GGTCTC	1 cut(s)	104
Bsp143I	GATC	2 cut(s)	148, 193
BspACI	CCGC	2 cut(s)	51, 111
BspANI	GGCC	1 cut(s)	110
BspLI	GGNNCC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	188
BspTNI	GGTCTC	1 cut(s)	104
BssMI	GATC	2 cut(s)	148, 193
BstDEI	CTNAG	1 cut(s)	24
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	2 cut(s)	151, 196
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	2 cut(s)	148, 193
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	29
BstV2I	GAAGAC	1 cut(s)	51
Bsu36I	CCTNAGG	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	110
CfoI	GCGC	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	32
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	3 cut(s)	20, 110, 129
CviKI_1	RGCY	3 cut(s)	20, 110, 129
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	2 cut(s)	150, 195
DpnII	GATC	2 cut(s)	148, 193
EaeI	YGGCCR	1 cut(s)	108
Eco31I	GGTCTC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	32
Eco81I	CCTNAGG	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	32
FaeI	CATG	1 cut(s)	128
FaiI	YATR	3 cut(s)	107, 126, 165
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	1 cut(s)	124
Fnu4HI	GCNGC	3 cut(s)	18, 52, 111
Fsp4HI	GCNGC	3 cut(s)	18, 52, 111
FspBI	CTAG	1 cut(s)	57
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	3 cut(s)	18, 52, 111
GsaI	CCCAGC	1 cut(s)	133
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	110
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	128
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HinfI	GANTC	1 cut(s)	140
HphI	GGTGA	1 cut(s)	53
Hpy188III	TCNNGA	1 cut(s)	197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
HpyF3I	CTNAG	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	128
HspAI	GCGC	1 cut(s)	54
Kzo9I	GATC	2 cut(s)	148, 193
LpnPI	CCDG	3 cut(s)	51, 115, 210
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	1 cut(s)	234
MaeI	CTAG	1 cut(s)	57
MalI	GATC	2 cut(s)	150, 195
MboI	GATC	2 cut(s)	148, 193
MboII	GAAGA	1 cut(s)	56
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	1 cut(s)	22
MseI	TTAA	2 cut(s)	249, 262
MslI	CAYNNNNRTG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	135
NdeII	GATC	2 cut(s)	148, 193
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	1 cut(s)	33
PkrI	GCNGC	3 cut(s)	19, 53, 112
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
PpuMI	RGGWCCY	1 cut(s)	32
Psp5II	RGGWCCY	1 cut(s)	32
PspFI	CCCAGC	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	32
PspPPI	RGGWCCY	1 cut(s)	32
RseI	CAYNNNNRTG	1 cut(s)	230
SaqAI	TTAA	2 cut(s)	249, 262
SatI	GCNGC	3 cut(s)	18, 52, 111
Sau3AI	GATC	2 cut(s)	148, 193
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	1 cut(s)	134
SetI	ASST	2 cut(s)	37, 170
SfaNI	GCATC	1 cut(s)	234
SinI	GGWCC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	230
SsiI	CCGC	2 cut(s)	51, 111
SspMI	CTAG	1 cut(s)	57
TaqI	TCGA	1 cut(s)	73
TauI	GCSGC	2 cut(s)	54, 113
Tru1I	TTAA	2 cut(s)	249, 262
Tru9I	TTAA	2 cut(s)	249, 262
TseI	GCWGC	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	32
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.