Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0006012

Physical Location & Seq

Genomic Coordinates Reverse (-)

27462309 .. 27464449

Gene Structure 2141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1182200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGAATCCCAACCCCAATCCCAAAATCCCAACCATCACCAGAAATCCAATCCCAACATGAAGAAGTCTTGGTCTTTGAAATCCGACGACTCGGCCCAGGCCGATTCTCCCCTCCGATTCCACTCCCCGATCCGATCCGACGCCTCCGACCCGCCCGACACTCCGCCGTACGAGTCCGTCGAGAATACGCCGGAAAATCCGGTCGACAACTCCAAGGCGATCACGGTCGTCGACAAGTTCACCAAGTACTCGCCGCTCCGGCCTCAGAAGCCGCCGGAGAACGCCAAGGCGCCGTCGCCGGTGGTGGTGTACAACCGGGCGGTGAGGGAGGAAGTGGCGCCGTCCGTGTCGAAGGTTGGGCCGACCGGCGTAGTCAACGGTGTTGGAGGCGGGGAGGAGGGCGGAGTCACCGGTGTTGGCGGTGGGAGATCCAGGGGGCTGACGAATTCGATTCTAAGACGGTCGAAGAGGGGGGAGATGGTGAAGACGGCGGCGCTGGGGTTTAGAGTGAGCGAGTTGGTGCTGTGCCTGGTTTCGTTCTCGGTTATGGCGGCGGATAAGACTCAGGGCTGGAGCGGCGACTCCTTCGATCGCTACAAGGAATACAGGTATTGCTTATCTGTGAATGCAATTGGATTTGCATATGCTGCCTTTCAAGCCTACAATCTATCCTACCATATGGTCACCGGGAAGTACGTGATCCGCCACCATTTTCGTCGCCACTTTGATTTCTTCATGGATCAGGTACTGGCATACCTTCTCATTTCGGCATCCTCGTCTGCAGCCACCCGGGTTGACGACTGGCAATCAAATTGGGGGAAGGATGAGTTCACGGAGATGGCTACTGCTTCGGTCAGCATGGCCTTCCTGGCTTTTGTCGCCTTTGCGCTTAGCTCCCTCGTATCTGGTTACAACCTCTGTACCTATGATTCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

313

Amino Acids

34.22

Weight (kDa)

8.31

Isoelectric Point (pI)

46.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	160 - 294	2.5e-32	Casparian strip membrane protein domain
MARVEL	PF01284	165 - 298	1.7e-06	Membrane-associating domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36330 AT2G36330 AT5G62820
fragaria_vesca	FvH4_5g05230 FvH4_5g05230
malus_domestica	MD06G1175400.v1.1 MD13G1274000.v1.1 MD14G1182200.v1.1
prunus_persica	Prupe.5G174700_v2.0.a1
pyrus_communis	pycom06g15610 pycom14g15110
rosa_chinensis	RchiOBHm_Chr4g0422081 RchiOBHm_Chr7g0193681
rosa_laevigata	RLG00000004252 RLG00000009743
rosa_roxburghii	Rroxscaffold_1G00017200 Rroxscaffold_3G00261910 Rroxscaffold_4G00285190
rosa_rugosa	Rorug07G0011300
rosa_samantha	Rh2AG505200 Rh4BG244400 Rh4CG255200 Rh7AG138000 Rh7BG138200 Rh7CG141900 Rh7DG139300
rosa_wichuraiana	Rw7G011750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	289, 337
AccBSI	CCGCTC	2 cut(s)	256, 576
AccI	GTMKAC	2 cut(s)	204, 231
AclWI	GGATC	5 cut(s)	124, 129, 423, 694, 747
AcsI	RAATTY	1 cut(s)	445
AcyI	GRCGYC	3 cut(s)	141, 290, 338
AfaI	GTAC	6 cut(s)	170, 248, 311, 695, 747, 922
AgeI	ACCGGT	1 cut(s)	410
AgsI	TTSAA	2 cut(s)	79, 656
AjnI	CCWGG	4 cut(s)	96, 431, 528, 867
AluBI	AGCT	1 cut(s)	894
AluI	AGCT	1 cut(s)	894
AlwI	GGATC	5 cut(s)	124, 129, 423, 694, 747
AlwNI	CAGNNNCTG	1 cut(s)	748
Ama87I	CYCGRG	1 cut(s)	789
AoxI	GGCC	5 cut(s)	93, 99, 260, 359, 861
ApeKI	GCWGC	2 cut(s)	647, 782
ApoI	RAATTY	1 cut(s)	445
AsiGI	ACCGGT	1 cut(s)	410
AspLEI	GCGC	4 cut(s)	292, 340, 496, 889
AspS9I	GGNCC	2 cut(s)	94, 359
AsuC2I	CCSGG	4 cut(s)	317, 688, 790, 791
AsuHPI	GGTGA	6 cut(s)	29, 232, 334, 400, 493, 676
AvaI	CYCGRG	1 cut(s)	789
BaeI	ACNNNNGTAYC	2 cut(s)	904, 937
BanI	GGYRCC	2 cut(s)	289, 337
BbsI	GAAGAC	1 cut(s)	491
BbvI	GCAGC	2 cut(s)	634, 794
BccI	CCATC	3 cut(s)	42, 472, 832
BceAI	ACGGC	4 cut(s)	151, 277, 325, 504
BciT130I	CCWGG	4 cut(s)	98, 433, 530, 869
BcnI	CCSGG	4 cut(s)	317, 688, 790, 791
BfmI	CTRYAG	1 cut(s)	780
BfoI	RGCGCY	3 cut(s)	293, 341, 497
BglI	GCCNNNNNGGC	2 cut(s)	259, 869
BisI	GCNGC	7 cut(s)	254, 272, 492, 552, 577, 648, 783
BlpI	GCTNAGC	1 cut(s)	890
BlsI	GCNGC	7 cut(s)	255, 273, 493, 553, 578, 649, 784
BmcAI	AGTACT	1 cut(s)	248
Bme1390I	CCNGG	8 cut(s)	98, 317, 433, 530, 688, 790, 791, 869
BmeT110I	CYCGRG	1 cut(s)	789
BmgT120I	GGNCC	2 cut(s)	94, 359
BmiI	GGNNCC	2 cut(s)	291, 339
BmrFI	CCNGG	8 cut(s)	98, 317, 433, 530, 688, 790, 791, 869
BmsI	GCATC	1 cut(s)	779
BpiI	GAAGAC	1 cut(s)	491
BpmI	CTGGAG	1 cut(s)	592
Bpu1102I	GCTNAGC	1 cut(s)	890
BpuMI	CCSGG	4 cut(s)	317, 688, 790, 791
BsaAI	YACGTR	1 cut(s)	697
BsaHI	GRCGYC	3 cut(s)	141, 290, 338
BsaJI	CCNNGG	5 cut(s)	96, 213, 285, 432, 789
BsaWI	WCCGGW	2 cut(s)	199, 410
Bse118I	RCCGGY	3 cut(s)	298, 365, 410
Bse1I	ACTGG	2 cut(s)	753, 806
BseBI	CCWGG	4 cut(s)	98, 433, 530, 869
BseDI	CCNNGG	5 cut(s)	96, 213, 285, 432, 789
BseGI	GGATG	2 cut(s)	770, 829
BseMII	CTCAG	2 cut(s)	278, 578
BseNI	ACTGG	2 cut(s)	753, 806
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	2 cut(s)	634, 794
BseYI	CCCAGC	1 cut(s)	496
Bsh1285I	CGRYCG	5 cut(s)	204, 228, 366, 464, 592
BshFI	GGCC	5 cut(s)	95, 101, 262, 361, 863
BshNI	GGYRCC	2 cut(s)	289, 337
BshTI	ACCGGT	1 cut(s)	410
BsiEI	CGRYCG	5 cut(s)	204, 228, 366, 464, 592
BsiHKCI	CYCGRG	1 cut(s)	789
BsiWI	CGTACG	1 cut(s)	168
BsmI	GAATGC	1 cut(s)	631
BsnI	GGCC	5 cut(s)	95, 101, 262, 361, 863
BsoBI	CYCGRG	1 cut(s)	789
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	7 cut(s)	129, 134, 219, 428, 589, 699, 739
Bsp1720I	GCTNAGC	1 cut(s)	890
BspANI	GGCC	5 cut(s)	95, 101, 262, 361, 863
BspCNI	CTCAG	2 cut(s)	277, 577
BspLI	GGNNCC	2 cut(s)	291, 339
BspMAI	CTGCAG	1 cut(s)	784
BspPI	GGATC	5 cut(s)	124, 129, 423, 694, 747
BspT107I	GGYRCC	2 cut(s)	289, 337
BsrBI	CCGCTC	2 cut(s)	256, 576
BsrFI	RCCGGY	3 cut(s)	298, 365, 410
BsrGI	TGTACA	1 cut(s)	309
BsrI	ACTGG	2 cut(s)	753, 806
BssAI	RCCGGY	3 cut(s)	298, 365, 410
BssECI	CCNNGG	5 cut(s)	96, 213, 285, 432, 789
BssMI	GATC	7 cut(s)	129, 134, 219, 428, 589, 699, 739
BssNI	GRCGYC	3 cut(s)	141, 290, 338
BssT1I	CCWWGG	2 cut(s)	213, 285
Bst2UI	CCWGG	4 cut(s)	98, 433, 530, 869
Bst4CI	ACNGT	3 cut(s)	226, 380, 462
Bst6I	CTCTTC	1 cut(s)	461
BstACI	GRCGYC	3 cut(s)	141, 290, 338
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstAUI	TGTACA	1 cut(s)	309
BstBAI	YACGTR	1 cut(s)	697
BstDEI	CTNAG	4 cut(s)	264, 455, 564, 890
BstEII	GGTNACC	1 cut(s)	682
BstF5I	GGATG	2 cut(s)	770, 829
BstH2I	RGCGCY	3 cut(s)	293, 341, 497
BstHHI	GCGC	4 cut(s)	292, 340, 496, 889
BstKTI	GATC	7 cut(s)	132, 137, 222, 431, 592, 702, 742
BstMBI	GATC	7 cut(s)	129, 134, 219, 428, 589, 699, 739
BstMCI	CGRYCG	5 cut(s)	204, 228, 366, 464, 592
BstMWI	GCNNNNNNNGC	7 cut(s)	259, 268, 576, 647, 656, 869, 878
BstNI	CCWGG	4 cut(s)	98, 433, 530, 869
BstPI	GGTNACC	1 cut(s)	682
BstSCI	CCNGG	8 cut(s)	96, 315, 431, 528, 686, 788, 789, 867
BstSFI	CTRYAG	1 cut(s)	780
BstV1I	GCAGC	2 cut(s)	634, 794
BstV2I	GAAGAC	1 cut(s)	491
BstX2I	RGATCY	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	428
BsuRI	GGCC	5 cut(s)	95, 101, 262, 361, 863
BtsCI	GGATG	2 cut(s)	770, 829
CaiI	CAGNNNCTG	1 cut(s)	748
CfoI	GCGC	4 cut(s)	292, 340, 496, 889
Cfr10I	RCCGGY	3 cut(s)	298, 365, 410
Cfr13I	GGNCC	2 cut(s)	94, 359
Cfr9I	CCCGGG	1 cut(s)	789
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	6 cut(s)	169, 247, 310, 694, 746, 921
CspAI	ACCGGT	1 cut(s)	410
CspCI	CAANNNNNGTGG	2 cut(s)	775, 810
CviAII	CATG	4 cut(s)	58, 736, 859, 936
CviQI	GTAC	6 cut(s)	169, 247, 310, 694, 746, 921
DdeI	CTNAG	4 cut(s)	264, 455, 564, 890
DinI	GGCGCC	2 cut(s)	291, 339
DpnI	GATC	7 cut(s)	131, 136, 221, 430, 591, 701, 741
DpnII	GATC	7 cut(s)	129, 134, 219, 428, 589, 699, 739
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
EciI	GGCGGA	4 cut(s)	153, 417, 569, 692
Eco130I	CCWWGG	2 cut(s)	213, 285
Eco88I	CYCGRG	1 cut(s)	789
Eco91I	GGTNACC	1 cut(s)	682
EcoO65I	GGTNACC	1 cut(s)	682
EcoRI	GAATTC	1 cut(s)	445
EcoRII	CCWGG	4 cut(s)	96, 431, 528, 867
EcoT14I	CCWWGG	2 cut(s)	213, 285
EgeI	GGCGCC	2 cut(s)	291, 339
EheI	GGCGCC	2 cut(s)	291, 339
ErhI	CCWWGG	2 cut(s)	213, 285
FaeI	CATG	4 cut(s)	61, 739, 862, 939
FatI	CATG	4 cut(s)	57, 735, 858, 935
FauI	CCCGC	2 cut(s)	159, 383
FauNDI	CATATG	2 cut(s)	643, 678
FblI	GTMKAC	2 cut(s)	204, 231
Fnu4HI	GCNGC	7 cut(s)	254, 272, 492, 552, 577, 648, 783
FokI	GGATG	2 cut(s)	757, 836
Fsp4HI	GCNGC	7 cut(s)	254, 272, 492, 552, 577, 648, 783
GlaI	GCGC	4 cut(s)	291, 339, 495, 888
GluI	GCNGC	7 cut(s)	254, 272, 492, 552, 577, 648, 783
GsaI	CCCAGC	1 cut(s)	500
GsuI	CTGGAG	1 cut(s)	592
HaeII	RGCGCY	3 cut(s)	293, 341, 497
HaeIII	GGCC	5 cut(s)	95, 101, 262, 361, 863
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	4 cut(s)	292, 340, 496, 889
Hin1I	GRCGYC	3 cut(s)	141, 290, 338
Hin1II	CATG	4 cut(s)	61, 739, 862, 939
Hin6I	GCGC	4 cut(s)	290, 338, 494, 887
HinP1I	GCGC	4 cut(s)	290, 338, 494, 887
HincII	GTYRAC	4 cut(s)	205, 232, 376, 796
HindII	GTYRAC	4 cut(s)	205, 232, 376, 796
HphI	GGTGA	6 cut(s)	29, 232, 334, 400, 493, 676
Hpy166II	GTNNAC	7 cut(s)	205, 232, 240, 310, 376, 796, 831
Hpy188I	TCNGA	6 cut(s)	85, 116, 134, 139, 148, 267
Hpy188III	TCNNGA	1 cut(s)	181
Hpy8I	GTNNAC	7 cut(s)	205, 232, 240, 310, 376, 796, 831
Hpy99I	CGWCG	6 cut(s)	89, 143, 182, 233, 298, 720
HpyAV	CCTTC	5 cut(s)	346, 595, 767, 814, 874
HpyCH4III	ACNGT	3 cut(s)	226, 380, 462
HpyCH4IV	ACGT	1 cut(s)	696
HpyCH4V	TGCA	4 cut(s)	629, 641, 782, 935
HpyF10VI	GCNNNNNNNGC	7 cut(s)	259, 268, 576, 647, 656, 869, 878
HpyF3I	CTNAG	4 cut(s)	264, 455, 564, 890
HpySE526I	ACGT	1 cut(s)	696
Hsp92I	GRCGYC	3 cut(s)	141, 290, 338
Hsp92II	CATG	4 cut(s)	61, 739, 862, 939
HspAI	GCGC	4 cut(s)	290, 338, 494, 887
KasI	GGCGCC	2 cut(s)	289, 337
Kzo9I	GATC	7 cut(s)	129, 134, 219, 428, 589, 699, 739
LmnI	GCTCC	3 cut(s)	261, 573, 899
Lsp1109I	GCAGC	2 cut(s)	634, 794
LweI	GCATC	1 cut(s)	779
MaeII	ACGT	1 cut(s)	696
MaeIII	GTNAC	3 cut(s)	406, 682, 908
MalI	GATC	7 cut(s)	131, 136, 221, 430, 591, 701, 741
MbiI	CCGCTC	2 cut(s)	256, 576
MboI	GATC	7 cut(s)	129, 134, 219, 428, 589, 699, 739
MboII	GAAGA	4 cut(s)	73, 478, 496, 724
MfeI	CAATTG	1 cut(s)	630
MflI	RGATCY	1 cut(s)	428
MluCI	AATT	3 cut(s)	445, 630, 811
Mly113I	GGCGCC	2 cut(s)	290, 338
MlyI	GAGTC	5 cut(s)	83, 182, 414, 556, 575
MmeI	TCCRAC	4 cut(s)	108, 162, 171, 364
MslI	CAYNNNNRTG	1 cut(s)	836
MspR9I	CCNGG	8 cut(s)	98, 317, 433, 530, 688, 790, 791, 869
MunI	CAATTG	1 cut(s)	630
Mva1269I	GAATGC	1 cut(s)	631
MvaI	CCWGG	4 cut(s)	98, 433, 530, 869
MwoI	GCNNNNNNNGC	7 cut(s)	259, 268, 576, 647, 656, 869, 878
NarI	GGCGCC	2 cut(s)	290, 338
NciI	CCSGG	4 cut(s)	317, 688, 790, 791
NdeI	CATATG	2 cut(s)	643, 678
NdeII	GATC	7 cut(s)	129, 134, 219, 428, 589, 699, 739
NlaIII	CATG	4 cut(s)	61, 739, 862, 939
NlaIV	GGNNCC	2 cut(s)	291, 339
NmeAIII	GCCGAG	1 cut(s)	71
NmuCI	GTSAC	2 cut(s)	406, 682
PcsI	WCGNNNNNNNCGW	2 cut(s)	177, 773
PctI	GAATGC	1 cut(s)	631
PfeI	GAWTC	5 cut(s)	5, 104, 117, 451, 929
Pfl23II	CGTACG	1 cut(s)	168
PinAI	ACCGGT	1 cut(s)	410
PkrI	GCNGC	7 cut(s)	255, 273, 493, 553, 578, 649, 784
Ple19I	CGATCG	1 cut(s)	592
PleI	GAGTC	5 cut(s)	83, 181, 413, 556, 575
PluTI	GGCGCC	2 cut(s)	293, 341
PpsI	GAGTC	5 cut(s)	83, 181, 413, 556, 575
Ppu21I	YACGTR	1 cut(s)	697
Psp6I	CCWGG	4 cut(s)	96, 431, 528, 867
PspEI	GGTNACC	1 cut(s)	682
PspFI	CCCAGC	1 cut(s)	496
PspGI	CCWGG	4 cut(s)	96, 431, 528, 867
PspLI	CGTACG	1 cut(s)	168
PspN4I	GGNNCC	2 cut(s)	291, 339
PspPI	GGNCC	2 cut(s)	94, 359
PstI	CTGCAG	1 cut(s)	784
PstNI	CAGNNNCTG	1 cut(s)	748
PsuI	RGATCY	1 cut(s)	428
PvuI	CGATCG	1 cut(s)	592
RsaI	GTAC	6 cut(s)	170, 248, 311, 695, 747, 922
RsaNI	GTAC	6 cut(s)	169, 247, 310, 694, 746, 921
RseI	CAYNNNNRTG	1 cut(s)	836
SalI	GTCGAC	2 cut(s)	203, 230
SatI	GCNGC	7 cut(s)	254, 272, 492, 552, 577, 648, 783
Sau3AI	GATC	7 cut(s)	129, 134, 219, 428, 589, 699, 739
Sau96I	GGNCC	2 cut(s)	94, 359
ScaI	AGTACT	1 cut(s)	248
SchI	GAGTC	5 cut(s)	83, 182, 414, 556, 575
ScrFI	CCNGG	8 cut(s)	98, 317, 433, 530, 688, 790, 791, 869
SetI	ASST	8 cut(s)	357, 611, 699, 747, 759, 896, 918, 926
SfaNI	GCATC	1 cut(s)	779
SfcI	CTRYAG	1 cut(s)	780
SfoI	GGCGCC	2 cut(s)	291, 339
SgrAI	CRCCGGYG	2 cut(s)	298, 410
SmaI	CCCGGG	1 cut(s)	791
SmiMI	CAYNNNNRTG	1 cut(s)	836
Sse9I	AATT	3 cut(s)	445, 630, 811
SspDI	GGCGCC	2 cut(s)	289, 337
StyD4I	CCNGG	8 cut(s)	96, 315, 431, 528, 686, 788, 789, 867
StyI	CCWWGG	2 cut(s)	213, 285
TaaI	ACNGT	3 cut(s)	226, 380, 462
TaiI	ACGT	1 cut(s)	699
TaqI	TCGA	7 cut(s)	180, 204, 231, 350, 449, 464, 588
TaqII	GACCGA	1 cut(s)	841
TasI	AATT	3 cut(s)	445, 630, 811
TatI	WGTACW	2 cut(s)	246, 309
TauI	GCSGC	5 cut(s)	256, 274, 494, 554, 579
TfiI	GAWTC	5 cut(s)	5, 104, 117, 451, 929
TseFI	GTSAC	2 cut(s)	406, 682
TseI	GCWGC	2 cut(s)	647, 782
Tsp45I	GTSAC	2 cut(s)	406, 682
TspDTI	ATGAA	2 cut(s)	74, 724
TspGWI	ACGGA	3 cut(s)	166, 334, 848
TspMI	CCCGGG	1 cut(s)	789
XapI	RAATTY	1 cut(s)	445
XmaI	CCCGGG	1 cut(s)	789
XmiI	GTMKAC	2 cut(s)	204, 231
ZrmI	AGTACT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.