Rh4CG255200

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0006012
Physical Location & Seq
Forward (+)
50675832 .. 50676898
1067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG255200.1

Sequence Viewer

Length: 351 bp
ATGTCCAAGGTTTGGGTTGAGAGATGGAGGACGGCAAGGCAGCCCCTAAGGAGGGACCTTGTGATGAAGACGGCGGCGCTAGGATTTCAGGGTATCGAGTTGTTGCCGTGCTTGATTTTGGTCTCAGTTATGGCCGCTAATAAAACTCATGGCTGGGTTGGCGACTCCTTTGATCGCTACAAGGAATATAGGTTAGTGAAAGAGAGTATTGGCGTTGATCCAGAACATCTTTTTGGGAACAAGCAGAGCATCTCAATGCTTCCAAGTAAGTTATTGATTGTAGGAATAGGGTGGAGATGTTATACAAAGAAGTCTGGCATTAGTATCATCCCTGAAACCATCAATATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

116

Amino Acids

13.2

Weight (kDa)

9.74

Isoelectric Point (pI)

49.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 12
AciI CCGC 2 cut(s) 74, 135
AclWI GGATC 1 cut(s) 212
AcoI YGGCCR 1 cut(s) 132
AfiI CCNNNNNNNGG 3 cut(s) 12, 51, 52
AjuI GAANNNNNNNTTGG 2 cut(s) 216, 248
Alw26I GTCTC 1 cut(s) 127
AlwI GGATC 1 cut(s) 212
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 40
AspLEI GCGC 1 cut(s) 79
AspS9I GGNCC 1 cut(s) 55
AvaII GGWCC 1 cut(s) 55
AxyI CCTNAGG 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 52
BccI CCATC 2 cut(s) 18, 347
BceAI ACGGC 3 cut(s) 48, 87, 91
BcoDI GTCTC 1 cut(s) 127
BfaI CTAG 2 cut(s) 80, 349
BfoI RGCGCY 1 cut(s) 80
BisI GCNGC 3 cut(s) 41, 75, 135
BlsI GCNGC 3 cut(s) 42, 76, 136
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 56
BmsI GCATC 1 cut(s) 258
BpiI GAAGAC 1 cut(s) 74
BsaI GGTCTC 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 6
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 51, 52
Bse21I CCTNAGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 1 cut(s) 327
BseLI CCNNNNNNNGG 3 cut(s) 12, 51, 52
BseMII CTCAG 1 cut(s) 138
BseXI GCAGC 1 cut(s) 52
BseYI CCCAGC 1 cut(s) 153
BshFI GGCC 1 cut(s) 134
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 3 cut(s) 12, 51, 52
BsmAI GTCTC 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 1 cut(s) 134
Bso31I GGTCTC 1 cut(s) 127
Bsp143I GATC 2 cut(s) 172, 217
BspACI CCGC 2 cut(s) 74, 135
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 1 cut(s) 137
BspLI GGNNCC 1 cut(s) 56
BspPI GGATC 1 cut(s) 212
BspTNI GGTCTC 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 2 cut(s) 172, 217
BssT1I CCWWGG 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 47, 124
BstF5I GGATG 1 cut(s) 327
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 2 cut(s) 175, 220
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 2 cut(s) 172, 217
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 52
BstV2I GAAGAC 1 cut(s) 74
Bsu36I CCTNAGG 1 cut(s) 47
BsuRI GGCC 1 cut(s) 134
BtsCI GGATG 1 cut(s) 327
CfoI GCGC 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 55
CviAII CATG 1 cut(s) 149
CviJI RGCY 3 cut(s) 43, 134, 153
CviKI_1 RGCY 3 cut(s) 43, 134, 153
DdeI CTNAG 2 cut(s) 47, 124
DpnI GATC 2 cut(s) 174, 219
DpnII GATC 2 cut(s) 172, 217
EaeI YGGCCR 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 6
Eco31I GGTCTC 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 55
Eco81I CCTNAGG 1 cut(s) 47
EcoO109I RGGNCCY 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 1 cut(s) 152
FaiI YATR 4 cut(s) 131, 150, 189, 303
FaqI GGGAC 1 cut(s) 68
FatI CATG 1 cut(s) 148
Fnu4HI GCNGC 3 cut(s) 41, 75, 135
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 3 cut(s) 41, 75, 135
FspBI CTAG 2 cut(s) 80, 349
GlaI GCGC 1 cut(s) 78
GluI GCNGC 3 cut(s) 41, 75, 135
GsaI CCCAGC 1 cut(s) 157
HaeII RGCGCY 1 cut(s) 80
HaeIII GGCC 1 cut(s) 134
HhaI GCGC 1 cut(s) 79
Hin1II CATG 1 cut(s) 152
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HinfI GANTC 1 cut(s) 164
Hpy188III TCNNGA 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 2 cut(s) 47, 124
Hsp92II CATG 1 cut(s) 152
HspAI GCGC 1 cut(s) 77
Kzo9I GATC 2 cut(s) 172, 217
LpnPI CCDG 5 cut(s) 74, 139, 234, 300, 345
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 1 cut(s) 258
MaeI CTAG 2 cut(s) 80, 349
MalI GATC 2 cut(s) 174, 219
MboI GATC 2 cut(s) 172, 217
MboII GAAGA 1 cut(s) 79
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 2 cut(s) 21, 45
MslI CAYNNNNRTG 1 cut(s) 254
MwoI GCNNNNNNNGC 1 cut(s) 159
NdeII GATC 2 cut(s) 172, 217
NlaIII CATG 1 cut(s) 152
NlaIV GGNNCC 1 cut(s) 56
PflMI CCANNNNNTGG 1 cut(s) 12
PkrI GCNGC 3 cut(s) 42, 76, 136
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PpuMI RGGWCCY 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 55
PspFI CCCAGC 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 1 cut(s) 55
PspPPI RGGWCCY 1 cut(s) 55
RseI CAYNNNNRTG 1 cut(s) 254
SatI GCNGC 3 cut(s) 41, 75, 135
Sau3AI GATC 2 cut(s) 172, 217
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 1 cut(s) 158
SetI ASST 3 cut(s) 12, 60, 194
SfaNI GCATC 1 cut(s) 258
SinI GGWCC 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 254
SsiI CCGC 2 cut(s) 74, 135
SspMI CTAG 2 cut(s) 80, 349
StyI CCWWGG 1 cut(s) 6
TaqI TCGA 1 cut(s) 96
TauI GCSGC 2 cut(s) 77, 137
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 80
Van91I CCANNNNNTGG 1 cut(s) 12
VpaK11BI GGWCC 1 cut(s) 55
XspI CTAG 2 cut(s) 80, 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.