Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006012

Physical Location & Seq

Genomic Coordinates Reverse (-)

6601520 .. 6603874

Gene Structure 2355 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00285190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAAAGAAGGCAGAATTCTAATGAATATATGTGAACCTAGAGTTGCTGAGACCACCTACATGGACAAGGTTGATGGAGTCATGGAGCTCGAATTGAGATCCACAAAGGGCATGTTAGTGAAAGAGAGTATTGGCATTGATCCAGAACATCTTTTTGCGAACAAGCAGAGCATCTCAATGCTTCCAAGTAAGGTATTGCAAAATTTAGCAGTTCAAACAACCTGGACTGGTTCTGTTAAATCTCATTGTGCACACTTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

87

Amino Acids

9.72

Weight (kDa)

6.82

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36330 AT2G36330 AT5G62820
fragaria_vesca	FvH4_5g05230 FvH4_5g05230
malus_domestica	MD06G1175400.v1.1 MD13G1274000.v1.1 MD14G1182200.v1.1
prunus_persica	Prupe.5G174700_v2.0.a1
pyrus_communis	pycom06g15610 pycom14g15110
rosa_chinensis	RchiOBHm_Chr4g0422081 RchiOBHm_Chr7g0193681
rosa_laevigata	RLG00000004252 RLG00000009743
rosa_roxburghii	Rroxscaffold_1G00017200 Rroxscaffold_3G00261910 Rroxscaffold_4G00285190
rosa_rugosa	Rorug07G0011300
rosa_samantha	Rh2AG505200 Rh4BG244400 Rh4CG255200 Rh7AG138000 Rh7BG138200 Rh7CG141900 Rh7DG139300
rosa_wichuraiana	Rw7G011750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	93, 134
AcsI	RAATTY	2 cut(s)	15, 202
AgsI	TTSAA	1 cut(s)	215
AjnI	CCWGG	1 cut(s)	221
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
Alw21I	GWGCWC	2 cut(s)	90, 253
Alw26I	GTCTC	1 cut(s)	44
Alw44I	GTGCAC	1 cut(s)	249
AlwI	GGATC	2 cut(s)	93, 134
ApaLI	GTGCAC	1 cut(s)	249
ApoI	RAATTY	2 cut(s)	15, 202
BaeGI	GKGCMC	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	90
Bbv12I	GWGCWC	2 cut(s)	90, 253
BccI	CCATC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	39
Bme1390I	CCNGG	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	232
BseSI	GKGCMC	1 cut(s)	253
BsiHKAI	GWGCWC	2 cut(s)	90, 253
BsmAI	GTCTC	1 cut(s)	44
Bso31I	GGTCTC	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	90, 253
Bsp143I	GATC	2 cut(s)	98, 139
BspCNI	CTCAG	1 cut(s)	40
BspPI	GGATC	2 cut(s)	93, 134
BspTNI	GGTCTC	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	232
BssMI	GATC	2 cut(s)	98, 139
Bst2UI	CCWGG	1 cut(s)	223
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstDEI	CTNAG	1 cut(s)	48
BstKTI	GATC	2 cut(s)	101, 142
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	2 cut(s)	98, 139
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNI	CCWGG	1 cut(s)	223
BstNSI	RCATGY	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	221
BstSLI	GKGCMC	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	98
BstXI	CCANNNNNNTGG	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	98
CviAII	CATG	3 cut(s)	61, 82, 112
CviJI	RGCY	1 cut(s)	88
CviKI_1	RGCY	1 cut(s)	88
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	2 cut(s)	100, 141
DpnII	GATC	2 cut(s)	98, 139
Ecl136II	GAGCTC	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	90
Eco31I	GGTCTC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	88
EcoICRI	GAGCTC	1 cut(s)	88
EcoRI	GAATTC	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	221
EcoT38I	GRGCYC	1 cut(s)	90
FaeI	CATG	3 cut(s)	64, 85, 115
FaiI	YATR	6 cut(s)	29, 31, 62, 83, 113, 262
FatI	CATG	3 cut(s)	60, 81, 111
FriOI	GRGCYC	1 cut(s)	90
FspBI	CTAG	1 cut(s)	39
Hin1II	CATG	3 cut(s)	64, 85, 115
HinfI	GANTC	1 cut(s)	78
Hpy166II	GTNNAC	2 cut(s)	35, 251
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	2 cut(s)	35, 251
HpyCH4V	TGCA	3 cut(s)	199, 251, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	1 cut(s)	48
Hsp92II	CATG	3 cut(s)	64, 85, 115
Kzo9I	GATC	2 cut(s)	98, 139
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	4 cut(s)	156, 208, 213, 235
LweI	GCATC	1 cut(s)	180
MaeI	CTAG	1 cut(s)	39
MalI	GATC	2 cut(s)	100, 141
MboI	GATC	2 cut(s)	98, 139
MflI	RGATCY	1 cut(s)	98
MhlI	GDGCHC	2 cut(s)	90, 253
MluCI	AATT	3 cut(s)	15, 92, 202
MlyI	GAGTC	1 cut(s)	87
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	3 cut(s)	59, 116, 176
MspR9I	CCNGG	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	223
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeII	GATC	2 cut(s)	98, 139
NlaIII	CATG	3 cut(s)	64, 85, 115
NspI	RCATGY	1 cut(s)	115
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
Psp124BI	GAGCTC	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	98
RseI	CAYNNNNRTG	3 cut(s)	59, 116, 176
SacI	GAGCTC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	237
Sau3AI	GATC	2 cut(s)	98, 139
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	2 cut(s)	90, 253
SetI	ASST	6 cut(s)	40, 59, 72, 90, 195, 224
SfaNI	GCATC	1 cut(s)	180
SmiMI	CAYNNNNRTG	3 cut(s)	59, 116, 176
Sse9I	AATT	3 cut(s)	15, 92, 202
SspMI	CTAG	1 cut(s)	39
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	221
TaqI	TCGA	1 cut(s)	90
TasI	AATT	3 cut(s)	15, 92, 202
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TspDTI	ATGAA	2 cut(s)	17, 38
VneI	GTGCAC	1 cut(s)	249
XapI	RAATTY	2 cut(s)	15, 202
XceI	RCATGY	1 cut(s)	115
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.