RchiOBHm_Chr4g0422081

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0006012
Physical Location & Seq
Reverse (-)
47763673 .. 47764402
730 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39168

Sequence Viewer

Length: 243 bp
ATGTCCAAGGTTTGGGTTGAGAGATGGAGGACGGCAAGGCAGCCCCTAAGGAGGGACCTTGTGGTGAAGATGGCGGCGCTAGGATTTCAGGGTATCGAGTTGTTGCCGTGCTTGATTTTGTTCTCGGTTATGGCCGCTAATAAAACTCATGGCTGGGTTGGCGACTCCTTTGATCGCTACAAGGAATACAGTCAATATCCCGAGTTAGAATCTCTGCATTTCAGTCTCTCAATGGTGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

80

Amino Acids

9.32

Weight (kDa)

8.93

Isoelectric Point (pI)

61.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 12
AciI CCGC 2 cut(s) 74, 135
AcoI YGGCCR 1 cut(s) 132
AfiI CCNNNNNNNGG 3 cut(s) 12, 51, 52
AluBI AGCT 1 cut(s) 240
AluI AGCT 1 cut(s) 240
Alw26I GTCTC 1 cut(s) 230
Ama87I CYCGRG 1 cut(s) 200
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 40
AspLEI GCGC 1 cut(s) 79
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 76
AvaI CYCGRG 1 cut(s) 200
AvaII GGWCC 1 cut(s) 55
AxyI CCTNAGG 1 cut(s) 47
BbvI GCAGC 1 cut(s) 52
BccI CCATC 2 cut(s) 18, 64
BceAI ACGGC 2 cut(s) 48, 91
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 1 cut(s) 80
BfoI RGCGCY 1 cut(s) 80
BisI GCNGC 3 cut(s) 41, 75, 135
BlsI GCNGC 3 cut(s) 42, 76, 136
Bme18I GGWCC 1 cut(s) 55
BmeT110I CYCGRG 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 6
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 51, 52
Bse21I CCTNAGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 6
BseLI CCNNNNNNNGG 3 cut(s) 12, 51, 52
BseXI GCAGC 1 cut(s) 52
BseYI CCCAGC 1 cut(s) 153
BshFI GGCC 1 cut(s) 134
BsiHKCI CYCGRG 1 cut(s) 200
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 3 cut(s) 12, 51, 52
BsmAI GTCTC 1 cut(s) 230
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 1 cut(s) 134
BsoBI CYCGRG 1 cut(s) 200
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 2 cut(s) 74, 135
BspANI GGCC 1 cut(s) 134
BspLI GGNNCC 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 47
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 52
Bsu36I CCTNAGG 1 cut(s) 47
BsuRI GGCC 1 cut(s) 134
CfoI GCGC 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 55
CviAII CATG 1 cut(s) 149
CviJI RGCY 4 cut(s) 43, 134, 153, 240
CviKI_1 RGCY 4 cut(s) 43, 134, 153, 240
DdeI CTNAG 1 cut(s) 47
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 55
Eco81I CCTNAGG 1 cut(s) 47
Eco88I CYCGRG 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 1 cut(s) 152
FaiI YATR 2 cut(s) 131, 150
FaqI GGGAC 1 cut(s) 68
FatI CATG 1 cut(s) 148
Fnu4HI GCNGC 3 cut(s) 41, 75, 135
Fsp4HI GCNGC 3 cut(s) 41, 75, 135
FspBI CTAG 1 cut(s) 80
GlaI GCGC 1 cut(s) 78
GluI GCNGC 3 cut(s) 41, 75, 135
GsaI CCCAGC 1 cut(s) 157
HaeII RGCGCY 1 cut(s) 80
HaeIII GGCC 1 cut(s) 134
HhaI GCGC 1 cut(s) 79
Hin1II CATG 1 cut(s) 152
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HinfI GANTC 2 cut(s) 164, 209
HphI GGTGA 1 cut(s) 76
Hpy188III TCNNGA 1 cut(s) 200
HpyCH4III ACNGT 1 cut(s) 191
HpyCH4V TGCA 1 cut(s) 217
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 1 cut(s) 47
Hsp92II CATG 1 cut(s) 152
HspAI GCGC 1 cut(s) 77
Kzo9I GATC 1 cut(s) 172
LpnPI CCDG 2 cut(s) 74, 139
Lsp1109I GCAGC 1 cut(s) 52
MaeI CTAG 1 cut(s) 80
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 1 cut(s) 79
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 2 cut(s) 21, 45
MwoI GCNNNNNNNGC 1 cut(s) 159
NdeII GATC 1 cut(s) 172
NlaIII CATG 1 cut(s) 152
NlaIV GGNNCC 1 cut(s) 56
PfeI GAWTC 1 cut(s) 209
PflMI CCANNNNNTGG 1 cut(s) 12
PkrI GCNGC 3 cut(s) 42, 76, 136
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PpuMI RGGWCCY 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 55
PspFI CCCAGC 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 1 cut(s) 55
PspPPI RGGWCCY 1 cut(s) 55
SatI GCNGC 3 cut(s) 41, 75, 135
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 1 cut(s) 158
SetI ASST 3 cut(s) 12, 60, 242
SinI GGWCC 1 cut(s) 55
SsiI CCGC 2 cut(s) 74, 135
SspMI CTAG 1 cut(s) 80
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 191
TaqI TCGA 1 cut(s) 96
TauI GCSGC 2 cut(s) 77, 137
TfiI GAWTC 1 cut(s) 209
TseI GCWGC 1 cut(s) 40
Van91I CCANNNNNTGG 1 cut(s) 12
VpaK11BI GGWCC 1 cut(s) 55
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.