AT2G36330

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006012
Physical Location & Seq
Forward (+)
15233500 .. 15235528
2029 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G36330.2

Sequence Viewer

Length: 852 bp
ATGAGATCTCCAGCAAAGACGATGCCGTCGATGTCACCTTCTTCAGTTTCCACGGAGAAATCTCCACCTCCGTCAGATACTTCAATGGCTATAGTAGCTTTCGATAACTCCACTACTCACTTCTCTTCTTCTCCATCGCCGCCACATTCTCTTGATCATTCCAGTGAATCGGAGAAGGAAGATGCGAAAAGTAAACCCGAGAGTAGAAGAAACAAGAATCCTGGAAAGGTTGAGGAAACTCCATCTCCGATTGTGGTGGTTCATAATCACAATCGCTCTGTGAAAGAAGTGGTTCCGACGAGAAAGAGTGCGAGAGTTGGTTCTGGGAGAAGTAGTGGCCAACGATCTGGAGCTGTTTCGGCTATTTTGAGAAGGTCTAGGAGAGAAGAGGTGGTAAAGTTTTCAGCTTTAGGGTTTCGGTTGAGTGAGGTTGTGTTGGCTTTGATATCTTTCTCAATTATGGCTGCTGATAAAACTAAAGGTTGGAGTGGTGATTCTTTCGATCGTTACAAGGAGTACAGGTTTTGCCTGTCTGTGAACGTGGTTGCTTTTGTATATTCTAGTTTTCAAGCATGTGACTTAGCGTACCATCTTGTCAAAGAGAAGCATTTGATCAGCCACCACCTTCGACCTCTGTTTGAGTTCATTATAGATCAGGTACTTGCATATCTGCTTATGTCTGCCTCAACAGCAGCAGTCACTCGCGTTGATGATTGGGTTTCAAACTGGGGAAAAGACGAGTTCACAGAGATGGCAAGTGCCTCGATTGCTATGTCCTTCCTGGCCTTCCTTGCCTTTGCTTTCAGTTCCCTCATTTCAGGCTATAACCTATTTAACCAAGGCTCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

283

Amino Acids

31.18

Weight (kDa)

9.16

Isoelectric Point (pI)

64.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 132 - 220 4.8e-18 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 25
AccII CGCG 1 cut(s) 705
AciI CCGC 1 cut(s) 140
AcoI YGGCCR 1 cut(s) 337
AcuI CTGAAG 1 cut(s) 27
AfaI GTAC 3 cut(s) 518, 587, 660
AgsI TTSAA 3 cut(s) 84, 569, 723
AjnI CCWGG 2 cut(s) 220, 780
AluBI AGCT 3 cut(s) 98, 353, 407
AluI AGCT 3 cut(s) 98, 353, 407
Ama87I CYCGRG 1 cut(s) 197
AoxI GGCC 2 cut(s) 337, 783
ApeKI GCWGC 2 cut(s) 464, 692
Asp700I GAANNNNTTC 1 cut(s) 291
AsuHPI GGTGA 2 cut(s) 27, 503
AvaI CYCGRG 1 cut(s) 197
BalI TGGCCA 1 cut(s) 339
BbvI GCAGC 2 cut(s) 451, 704
BccI CCATC 4 cut(s) 142, 250, 597, 745
BceAI ACGGC 1 cut(s) 10
BcgI CGANNNNNNTGC 2 cut(s) 744, 778
BciT130I CCWGG 2 cut(s) 222, 782
BclI TGATCA 2 cut(s) 154, 612
BfaI CTAG 2 cut(s) 378, 561
BfmI CTRYAG 1 cut(s) 90
BglII AGATCT 1 cut(s) 5
BisI GCNGC 3 cut(s) 140, 465, 693
BlsI GCNGC 3 cut(s) 141, 466, 694
Bme1390I CCNGG 2 cut(s) 222, 782
BmeT110I CYCGRG 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 294
BmrFI CCNGG 2 cut(s) 222, 782
BmrI ACTGGG 1 cut(s) 736
BmsI GCATC 2 cut(s) 12, 172
BmuI ACTGGG 1 cut(s) 736
BpmI CTGGAG 1 cut(s) 369
BsaJI CCNNGG 2 cut(s) 51, 838
BsaXI ACNNNNNCTCC 6 cut(s) 229, 259, 319, 349, 506, 536
Bse1I ACTGG 2 cut(s) 162, 731
BseBI CCWGG 2 cut(s) 222, 782
BseDI CCNNGG 2 cut(s) 51, 838
BseNI ACTGG 2 cut(s) 162, 731
BseXI GCAGC 2 cut(s) 451, 704
Bsh1236I CGCG 1 cut(s) 705
Bsh1285I CGRYCG 1 cut(s) 505
BshFI GGCC 2 cut(s) 339, 785
BsiEI CGRYCG 1 cut(s) 505
BsiHKCI CYCGRG 1 cut(s) 197
BsnI GGCC 2 cut(s) 339, 785
BsoBI CYCGRG 1 cut(s) 197
Bsp143I GATC 6 cut(s) 5, 154, 344, 502, 612, 652
BspACI CCGC 1 cut(s) 140
BspANI GGCC 2 cut(s) 339, 785
BspFNI CGCG 1 cut(s) 705
BspLI GGNNCC 1 cut(s) 294
BsrI ACTGG 2 cut(s) 162, 731
BssECI CCNNGG 2 cut(s) 51, 838
BssMI GATC 6 cut(s) 5, 154, 344, 502, 612, 652
BssT1I CCWWGG 1 cut(s) 838
Bst2UI CCWGG 2 cut(s) 222, 782
Bst6I CTCTTC 2 cut(s) 130, 381
BstDEI CTNAG 1 cut(s) 580
BstDSI CCRYGG 1 cut(s) 51
BstFNI CGCG 1 cut(s) 705
BstKTI GATC 6 cut(s) 8, 157, 347, 505, 615, 655
BstMBI GATC 6 cut(s) 5, 154, 344, 502, 612, 652
BstMCI CGRYCG 1 cut(s) 505
BstMWI GCNNNNNNNGC 5 cut(s) 95, 359, 689, 767, 791
BstNI CCWGG 2 cut(s) 222, 782
BstNSI RCATGY 1 cut(s) 576
BstSCI CCNGG 2 cut(s) 220, 780
BstSFI CTRYAG 1 cut(s) 90
BstUI CGCG 1 cut(s) 705
BstV1I GCAGC 2 cut(s) 451, 704
BstX2I RGATCY 1 cut(s) 5
BstXI CCANNNNNNTGG 1 cut(s) 347
BstYI RGATCY 1 cut(s) 5
BsuRI GGCC 2 cut(s) 339, 785
BtgI CCRYGG 1 cut(s) 51
BtgZI GCGATG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 169
Csp6I GTAC 3 cut(s) 517, 586, 659
CviAII CATG 1 cut(s) 573
CviQI GTAC 3 cut(s) 517, 586, 659
DdeI CTNAG 1 cut(s) 580
DpnI GATC 6 cut(s) 7, 156, 346, 504, 614, 654
DpnII GATC 6 cut(s) 5, 154, 344, 502, 612, 652
DrdI GACNNNNNNGTC 1 cut(s) 25
DseDI GACNNNNNNGTC 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 337
Eam1104I CTCTTC 2 cut(s) 130, 381
EarI CTCTTC 2 cut(s) 130, 381
Eco130I CCWWGG 1 cut(s) 838
Eco32I GATATC 1 cut(s) 447
Eco57I CTGAAG 1 cut(s) 27
Eco88I CYCGRG 1 cut(s) 197
EcoRII CCWGG 2 cut(s) 220, 780
EcoRV GATATC 1 cut(s) 447
EcoT14I CCWWGG 1 cut(s) 838
ErhI CCWWGG 1 cut(s) 838
FaeI CATG 1 cut(s) 576
FatI CATG 1 cut(s) 572
FbaI TGATCA 2 cut(s) 154, 612
Fnu4HI GCNGC 3 cut(s) 140, 465, 693
Fsp4HI GCNGC 3 cut(s) 140, 465, 693
FspBI CTAG 2 cut(s) 378, 561
GluI GCNGC 3 cut(s) 140, 465, 693
GsuI CTGGAG 1 cut(s) 369
HaeIII GGCC 2 cut(s) 339, 785
Hin1II CATG 1 cut(s) 576
HinfI GANTC 3 cut(s) 167, 217, 494
HphI GGTGA 2 cut(s) 27, 503
Hpy166II GTNNAC 3 cut(s) 194, 538, 744
Hpy188I TCNGA 5 cut(s) 76, 172, 249, 297, 851
Hpy188III TCNNGA 2 cut(s) 152, 348
Hpy8I GTNNAC 3 cut(s) 194, 538, 744
Hpy99I CGWCG 2 cut(s) 31, 301
HpyAV CCTTC 6 cut(s) 48, 169, 366, 635, 787, 796
HpyCH4IV ACGT 1 cut(s) 540
HpyCH4V TGCA 1 cut(s) 665
HpyF10VI GCNNNNNNNGC 5 cut(s) 95, 359, 689, 767, 791
HpyF3I CTNAG 1 cut(s) 580
HpySE526I ACGT 1 cut(s) 540
Hsp92II CATG 1 cut(s) 576
Ksp22I TGATCA 2 cut(s) 154, 612
Kzo9I GATC 6 cut(s) 5, 154, 344, 502, 612, 652
LmnI GCTCC 1 cut(s) 350
Lsp1109I GCAGC 2 cut(s) 451, 704
LweI GCATC 2 cut(s) 12, 172
MaeI CTAG 2 cut(s) 378, 561
MaeII ACGT 1 cut(s) 540
MaeIII GTNAC 4 cut(s) 33, 506, 575, 697
MalI GATC 6 cut(s) 7, 156, 346, 504, 614, 654
MboI GATC 6 cut(s) 5, 154, 344, 502, 612, 652
MboII GAAGA 6 cut(s) 33, 117, 120, 191, 219, 398
MflI RGATCY 1 cut(s) 5
MlsI TGGCCA 1 cut(s) 339
MluCI AATT 1 cut(s) 456
MluNI TGGCCA 1 cut(s) 339
MmeI TCCRAC 2 cut(s) 320, 464
MnlI CCTC 8 cut(s) 78, 226, 382, 421, 642, 694, 772, 821
Mox20I TGGCCA 1 cut(s) 339
MroXI GAANNNNTTC 1 cut(s) 291
MscI TGGCCA 1 cut(s) 339
MseI TTAA 1 cut(s) 834
MslI CAYNNNNRTG 2 cut(s) 162, 749
Msp20I TGGCCA 1 cut(s) 339
MspR9I CCNGG 2 cut(s) 222, 782
MvaI CCWGG 2 cut(s) 222, 782
MvnI CGCG 1 cut(s) 705
MwoI GCNNNNNNNGC 5 cut(s) 95, 359, 689, 767, 791
NdeII GATC 6 cut(s) 5, 154, 344, 502, 612, 652
NlaIII CATG 1 cut(s) 576
NlaIV GGNNCC 1 cut(s) 294
NmuCI GTSAC 3 cut(s) 33, 575, 697
NspI RCATGY 1 cut(s) 576
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 3 cut(s) 167, 217, 494
PfoI TCCNGGA 1 cut(s) 220
PkrI GCNGC 3 cut(s) 141, 466, 694
Ple19I CGATCG 1 cut(s) 505
Psp6I CCWGG 2 cut(s) 220, 780
PspGI CCWGG 2 cut(s) 220, 780
PspN4I GGNNCC 1 cut(s) 294
PsuI RGATCY 1 cut(s) 5
PvuI CGATCG 1 cut(s) 505
RsaI GTAC 3 cut(s) 518, 587, 660
RsaNI GTAC 3 cut(s) 517, 586, 659
RseI CAYNNNNRTG 2 cut(s) 162, 749
SaqAI TTAA 1 cut(s) 834
SatI GCNGC 3 cut(s) 140, 465, 693
Sau3AI GATC 6 cut(s) 5, 154, 344, 502, 612, 652
ScrFI CCNGG 2 cut(s) 222, 782
SfaNI GCATC 2 cut(s) 12, 172
SfcI CTRYAG 1 cut(s) 90
SmiMI CAYNNNNRTG 2 cut(s) 162, 749
Sse9I AATT 1 cut(s) 456
SsiI CCGC 1 cut(s) 140
SspMI CTAG 2 cut(s) 378, 561
StyD4I CCNGG 2 cut(s) 220, 780
StyI CCWWGG 1 cut(s) 838
TaiI ACGT 1 cut(s) 543
TaqI TCGA 5 cut(s) 29, 102, 501, 628, 764
TasI AATT 1 cut(s) 456
TatI WGTACW 1 cut(s) 516
TauI GCSGC 1 cut(s) 142
TfiI GAWTC 3 cut(s) 167, 217, 494
Tru1I TTAA 1 cut(s) 834
Tru9I TTAA 1 cut(s) 834
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 3 cut(s) 33, 575, 697
TseI GCWGC 2 cut(s) 464, 692
Tsp45I GTSAC 3 cut(s) 33, 575, 697
TspDTI ATGAA 2 cut(s) 251, 634
TspGWI ACGGA 2 cut(s) 60, 68
TspRI CASTG 1 cut(s) 169
XceI RCATGY 1 cut(s) 576
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 2 cut(s) 378, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.