Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006012

Physical Location & Seq

Genomic Coordinates Reverse (-)

20121293 .. 20122876

Gene Structure 1584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g15610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGAATCCCAACCCCAAACTCAGAAACCCAACCACCACCACCACCACCAGAAATCCAATCCCAACATGAAGAAGTCCTGGTCTCTGACCTCCGACGACTCGCCCCTCCGATTCCACTCCCCGATCCGATCCGACGCCTTCGACCCGCCCGACAGCCCGCCGTACCAGTCCCCCGAGAACTCGCCGGAGAAGCCGGTCGACAACTCCAAGGCGATCATGGCCGTCGACAAGTTCAACCAGTACCCGCCGCTCCGGCATCAGAAGCCGCCGGAGAACGCCAAGGCGCTGTCGCCGGTGGTGGTGTACAACCGGTCGGTGAAGGAGGAGGTGGCGCCGTCCGTGTCGAAGGTTGGGCCGACCGCCGGAGTCAACGGTGTTGGAGGCGGGGAGGAAGGCGAAGTCAACGGTGGGAGATCCAAGGGGGTGACGAATTCGATTCTGAGACGGTCGAAGAGGGGGGAGATGATGAAGACGGCGGCGCTGGGGTTTAGGGTGAGTGAGTTGGTGTTGTGCTTGATTTCGTTCTCGGTTATGGCGGCGGACAAGACTCAGGGATGGAGCGGCGACTCCTTCGACCGCTACAAGGAATACAGGTATTGCTTAGCTGTGAATGTAATTGGATTTGTATATGCTGCCTTTCAAGCCTATAATCTATCCTACCATCTAGTCACCGGGAAGTTCGTGATCCGCCACCATCTCCGTCATCACTTTGATTTTTTCATGGATCAGGTGCTGGCATACCTTCTCATTTCTGCGTCATCGTCTGCGGCCACTCGGGTCGACGACTGGCAATCAAATTGGGGGAAAGATGAGTTCACGGAGATGGCCACTGCTTCGGTTAGCATGGCTTTCCTGGCTTTTGTTGCCTTTGCGCTTAGCTCCCTTATATCTGGTTACAACCTCTGTATCCATGACTCTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

308

Amino Acids

34.08

Weight (kDa)

8.32

Isoelectric Point (pI)

46.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	155 - 289	1.5e-32	Casparian strip membrane protein domain
MARVEL	PF01284	160 - 293	9.2e-08	Membrane-associating domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36330 AT2G36330 AT5G62820
fragaria_vesca	FvH4_5g05230 FvH4_5g05230
malus_domestica	MD06G1175400.v1.1 MD13G1274000.v1.1 MD14G1182200.v1.1
prunus_persica	Prupe.5G174700_v2.0.a1
pyrus_communis	pycom06g15610 pycom14g15110
rosa_chinensis	RchiOBHm_Chr4g0422081 RchiOBHm_Chr7g0193681
rosa_laevigata	RLG00000004252 RLG00000009743
rosa_roxburghii	Rroxscaffold_1G00017200 Rroxscaffold_3G00261910 Rroxscaffold_4G00285190
rosa_rugosa	Rorug07G0011300
rosa_samantha	Rh2AG505200 Rh4BG244400 Rh4CG255200 Rh7AG138000 Rh7BG138200 Rh7CG141900 Rh7DG139300
rosa_wichuraiana	Rw7G011750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	331
AccBSI	CCGCTC	2 cut(s)	250, 561
AccI	GTMKAC	3 cut(s)	198, 225, 780
AclWI	GGATC	5 cut(s)	118, 123, 408, 679, 732
AcoI	YGGCCR	3 cut(s)	219, 768, 825
AcsI	RAATTY	1 cut(s)	430
AcyI	GRCGYC	2 cut(s)	135, 332
AfaI	GTAC	3 cut(s)	164, 242, 305
AfiI	CCNNNNNNNGG	2 cut(s)	362, 583
AgeI	ACCGGT	1 cut(s)	309
AgsI	TTSAA	2 cut(s)	235, 641
AjnI	CCWGG	2 cut(s)	77, 852
AluBI	AGCT	2 cut(s)	605, 879
AluI	AGCT	2 cut(s)	605, 879
Alw26I	GTCTC	2 cut(s)	87, 436
AlwI	GGATC	5 cut(s)	118, 123, 408, 679, 732
AlwNI	CAGNNNCTG	1 cut(s)	733
Ama87I	CYCGRG	2 cut(s)	173, 774
AoxI	GGCC	4 cut(s)	219, 353, 768, 825
ApeKI	GCWGC	1 cut(s)	632
ApoI	RAATTY	1 cut(s)	430
AsiGI	ACCGGT	1 cut(s)	309
AspLEI	GCGC	4 cut(s)	286, 334, 481, 874
AspS9I	GGNCC	1 cut(s)	353
AsuC2I	CCSGG	1 cut(s)	673
AsuHPI	GGTGA	4 cut(s)	328, 436, 505, 661
AvaI	CYCGRG	2 cut(s)	173, 774
BaeI	ACNNNNGTAYC	2 cut(s)	889, 922
BalI	TGGCCA	1 cut(s)	827
BanI	GGYRCC	1 cut(s)	331
BbsI	GAAGAC	1 cut(s)	476
BbvI	GCAGC	1 cut(s)	619
BccI	CCATC	4 cut(s)	549, 669, 702, 817
BceAI	ACGGC	4 cut(s)	145, 206, 319, 489
BciT130I	CCWGG	2 cut(s)	79, 854
BciVI	GTATCC	1 cut(s)	917
BcnI	CCSGG	1 cut(s)	673
BcoDI	GTCTC	2 cut(s)	87, 436
BfaI	CTAG	1 cut(s)	665
BfoI	RGCGCY	3 cut(s)	287, 335, 482
BfuI	GTATCC	1 cut(s)	917
BglI	GCCNNNNNGGC	1 cut(s)	253
BisI	GCNGC	7 cut(s)	248, 266, 477, 537, 562, 633, 768
BlpI	GCTNAGC	2 cut(s)	601, 875
BlsI	GCNGC	7 cut(s)	249, 267, 478, 538, 563, 634, 769
Bme1390I	CCNGG	3 cut(s)	79, 673, 854
BmeT110I	CYCGRG	2 cut(s)	173, 774
BmgT120I	GGNCC	1 cut(s)	353
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	3 cut(s)	79, 673, 854
BmsI	GCATC	1 cut(s)	265
BpiI	GAAGAC	1 cut(s)	476
Bpu1102I	GCTNAGC	2 cut(s)	601, 875
BpuMI	CCSGG	1 cut(s)	673
BsaHI	GRCGYC	2 cut(s)	135, 332
BsaI	GGTCTC	1 cut(s)	87
BsaJI	CCNNGG	3 cut(s)	207, 279, 417
BsaWI	WCCGGW	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	2 cut(s)	362, 583
Bse118I	RCCGGY	3 cut(s)	193, 292, 309
Bse1I	ACTGG	3 cut(s)	166, 238, 791
BseBI	CCWGG	2 cut(s)	79, 854
BseDI	CCNNGG	3 cut(s)	207, 279, 417
BseGI	GGATG	1 cut(s)	560
BseLI	CCNNNNNNNGG	2 cut(s)	362, 583
BseMII	CTCAG	3 cut(s)	35, 431, 563
BseNI	ACTGG	3 cut(s)	166, 238, 791
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	1 cut(s)	619
BseYI	CCCAGC	1 cut(s)	481
Bsh1285I	CGRYCG	5 cut(s)	198, 314, 360, 449, 577
BshFI	GGCC	4 cut(s)	221, 355, 770, 827
BshNI	GGYRCC	1 cut(s)	331
BshTI	ACCGGT	1 cut(s)	309
BsiEI	CGRYCG	5 cut(s)	198, 314, 360, 449, 577
BsiHKCI	CYCGRG	2 cut(s)	173, 774
BsiSI	CCGG	8 cut(s)	185, 194, 253, 269, 293, 310, 363, 672
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	2 cut(s)	362, 583
BsmAI	GTCTC	2 cut(s)	87, 436
BsmBI	CGTCTC	1 cut(s)	436
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	4 cut(s)	221, 355, 770, 827
Bso31I	GGTCTC	1 cut(s)	87
BsoBI	CYCGRG	2 cut(s)	173, 774
Bsp1407I	TGTACA	1 cut(s)	303
Bsp143I	GATC	6 cut(s)	123, 128, 213, 413, 684, 724
Bsp1720I	GCTNAGC	2 cut(s)	601, 875
BspANI	GGCC	4 cut(s)	221, 355, 770, 827
BspCNI	CTCAG	3 cut(s)	34, 432, 562
BspLI	GGNNCC	1 cut(s)	333
BspPI	GGATC	5 cut(s)	118, 123, 408, 679, 732
BspT107I	GGYRCC	1 cut(s)	331
BspTNI	GGTCTC	1 cut(s)	87
BsrBI	CCGCTC	2 cut(s)	250, 561
BsrFI	RCCGGY	3 cut(s)	193, 292, 309
BsrGI	TGTACA	1 cut(s)	303
BsrI	ACTGG	3 cut(s)	166, 238, 791
BssAI	RCCGGY	3 cut(s)	193, 292, 309
BssECI	CCNNGG	3 cut(s)	207, 279, 417
BssMI	GATC	6 cut(s)	123, 128, 213, 413, 684, 724
BssNI	GRCGYC	2 cut(s)	135, 332
BssT1I	CCWWGG	3 cut(s)	207, 279, 417
Bst2UI	CCWGG	2 cut(s)	79, 854
Bst4CI	ACNGT	3 cut(s)	374, 407, 447
Bst6I	CTCTTC	1 cut(s)	446
BstACI	GRCGYC	2 cut(s)	135, 332
BstAUI	TGTACA	1 cut(s)	303
BstC8I	GCNNGC	2 cut(s)	158, 735
BstDEI	CTNAG	5 cut(s)	21, 440, 549, 601, 875
BstF5I	GGATG	1 cut(s)	560
BstH2I	RGCGCY	3 cut(s)	287, 335, 482
BstHHI	GCGC	4 cut(s)	286, 334, 481, 874
BstKTI	GATC	6 cut(s)	126, 131, 216, 416, 687, 727
BstMAI	GTCTC	2 cut(s)	87, 436
BstMBI	GATC	6 cut(s)	123, 128, 213, 413, 684, 724
BstMCI	CGRYCG	5 cut(s)	198, 314, 360, 449, 577
BstMWI	GCNNNNNNNGC	7 cut(s)	190, 218, 253, 262, 641, 854, 863
BstNI	CCWGG	2 cut(s)	79, 854
BstSCI	CCNGG	3 cut(s)	77, 671, 852
BstV1I	GCAGC	1 cut(s)	619
BstV2I	GAAGAC	1 cut(s)	476
BstX2I	RGATCY	1 cut(s)	413
BstYI	RGATCY	1 cut(s)	413
BsuI	GTATCC	1 cut(s)	917
BsuRI	GGCC	4 cut(s)	221, 355, 770, 827
BtsCI	GGATG	1 cut(s)	560
BtsI	GCAGTG	1 cut(s)	828
BtsIMutI	CAGTG	1 cut(s)	828
Cac8I	GCNNGC	2 cut(s)	158, 735
CaiI	CAGNNNCTG	1 cut(s)	733
CfoI	GCGC	4 cut(s)	286, 334, 481, 874
Cfr10I	RCCGGY	3 cut(s)	193, 292, 309
Cfr13I	GGNCC	1 cut(s)	353
CseI	GACGC	2 cut(s)	143, 744
Csp6I	GTAC	3 cut(s)	163, 241, 304
CspAI	ACCGGT	1 cut(s)	309
CviAII	CATG	5 cut(s)	67, 217, 721, 844, 911
CviQI	GTAC	3 cut(s)	163, 241, 304
DdeI	CTNAG	5 cut(s)	21, 440, 549, 601, 875
DinI	GGCGCC	1 cut(s)	333
DpnI	GATC	6 cut(s)	125, 130, 215, 415, 686, 726
DpnII	GATC	6 cut(s)	123, 128, 213, 413, 684, 724
EaeI	YGGCCR	3 cut(s)	219, 768, 825
Eam1104I	CTCTTC	1 cut(s)	446
EarI	CTCTTC	1 cut(s)	446
EciI	GGCGGA	2 cut(s)	554, 677
Eco130I	CCWWGG	3 cut(s)	207, 279, 417
Eco31I	GGTCTC	1 cut(s)	87
Eco88I	CYCGRG	2 cut(s)	173, 774
EcoRI	GAATTC	1 cut(s)	430
EcoRII	CCWGG	2 cut(s)	77, 852
EcoT14I	CCWWGG	3 cut(s)	207, 279, 417
EgeI	GGCGCC	1 cut(s)	333
EheI	GGCGCC	1 cut(s)	333
ErhI	CCWWGG	3 cut(s)	207, 279, 417
Esp3I	CGTCTC	1 cut(s)	436
FaeI	CATG	5 cut(s)	70, 220, 724, 847, 914
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	5 cut(s)	66, 216, 720, 843, 910
FauI	CCCGC	4 cut(s)	153, 165, 252, 377
FblI	GTMKAC	3 cut(s)	198, 225, 780
Fnu4HI	GCNGC	7 cut(s)	248, 266, 477, 537, 562, 633, 768
FokI	GGATG	1 cut(s)	567
Fsp4HI	GCNGC	7 cut(s)	248, 266, 477, 537, 562, 633, 768
FspBI	CTAG	1 cut(s)	665
GlaI	GCGC	4 cut(s)	285, 333, 480, 873
GluI	GCNGC	7 cut(s)	248, 266, 477, 537, 562, 633, 768
GsaI	CCCAGC	1 cut(s)	485
HaeII	RGCGCY	3 cut(s)	287, 335, 482
HaeIII	GGCC	4 cut(s)	221, 355, 770, 827
HapII	CCGG	8 cut(s)	185, 194, 253, 269, 293, 310, 363, 672
HgaI	GACGC	2 cut(s)	143, 744
HhaI	GCGC	4 cut(s)	286, 334, 481, 874
Hin1I	GRCGYC	2 cut(s)	135, 332
Hin1II	CATG	5 cut(s)	70, 220, 724, 847, 914
Hin6I	GCGC	4 cut(s)	284, 332, 479, 872
HinP1I	GCGC	4 cut(s)	284, 332, 479, 872
HincII	GTYRAC	5 cut(s)	199, 226, 370, 403, 781
HindII	GTYRAC	5 cut(s)	199, 226, 370, 403, 781
HinfI	GANTC	8 cut(s)	5, 98, 111, 366, 436, 547, 566, 914
HpaII	CCGG	8 cut(s)	185, 194, 253, 269, 293, 310, 363, 672
HphI	GGTGA	4 cut(s)	328, 436, 505, 661
Hpy166II	GTNNAC	7 cut(s)	199, 226, 304, 370, 403, 781, 816
Hpy188I	TCNGA	8 cut(s)	24, 87, 94, 110, 128, 133, 261, 441
Hpy188III	TCNNGA	1 cut(s)	682
Hpy8I	GTNNAC	7 cut(s)	199, 226, 304, 370, 403, 781, 816
Hpy99I	CGWCG	4 cut(s)	98, 137, 227, 785
HpyAV	CCTTC	6 cut(s)	148, 313, 340, 386, 580, 752
HpyCH4III	ACNGT	3 cut(s)	374, 407, 447
HpyF10VI	GCNNNNNNNGC	7 cut(s)	190, 218, 253, 262, 641, 854, 863
HpyF3I	CTNAG	5 cut(s)	21, 440, 549, 601, 875
Hsp92I	GRCGYC	2 cut(s)	135, 332
Hsp92II	CATG	5 cut(s)	70, 220, 724, 847, 914
HspAI	GCGC	4 cut(s)	284, 332, 479, 872
KasI	GGCGCC	1 cut(s)	331
Kzo9I	GATC	6 cut(s)	123, 128, 213, 413, 684, 724
LmnI	GCTCC	3 cut(s)	255, 558, 884
Lsp1109I	GCAGC	1 cut(s)	619
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	665
MaeIII	GTNAC	3 cut(s)	424, 667, 893
MalI	GATC	6 cut(s)	125, 130, 215, 415, 686, 726
MbiI	CCGCTC	2 cut(s)	250, 561
MboI	GATC	6 cut(s)	123, 128, 213, 413, 684, 724
MboII	GAAGA	3 cut(s)	82, 463, 481
MflI	RGATCY	1 cut(s)	413
MlsI	TGGCCA	1 cut(s)	827
MluCI	AATT	3 cut(s)	430, 615, 796
MluNI	TGGCCA	1 cut(s)	827
Mly113I	GGCGCC	1 cut(s)	332
MlyI	GAGTC	5 cut(s)	92, 375, 541, 560, 908
MmeI	TCCRAC	3 cut(s)	117, 156, 358
MnlI	CCTC	8 cut(s)	100, 116, 316, 319, 374, 382, 447, 911
Mox20I	TGGCCA	1 cut(s)	827
MscI	TGGCCA	1 cut(s)	827
MslI	CAYNNNNRTG	1 cut(s)	821
Msp20I	TGGCCA	1 cut(s)	827
MspI	CCGG	8 cut(s)	185, 194, 253, 269, 293, 310, 363, 672
MspR9I	CCNGG	3 cut(s)	79, 673, 854
MvaI	CCWGG	2 cut(s)	79, 854
MwoI	GCNNNNNNNGC	7 cut(s)	190, 218, 253, 262, 641, 854, 863
NarI	GGCGCC	1 cut(s)	332
NciI	CCSGG	1 cut(s)	673
NdeII	GATC	6 cut(s)	123, 128, 213, 413, 684, 724
NlaIII	CATG	5 cut(s)	70, 220, 724, 847, 914
NlaIV	GGNNCC	1 cut(s)	333
NmuCI	GTSAC	2 cut(s)	424, 667
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PfeI	GAWTC	3 cut(s)	5, 111, 436
PinAI	ACCGGT	1 cut(s)	309
PkrI	GCNGC	7 cut(s)	249, 267, 478, 538, 563, 634, 769
PleI	GAGTC	5 cut(s)	92, 374, 541, 560, 908
PluTI	GGCGCC	1 cut(s)	335
PpsI	GAGTC	5 cut(s)	92, 374, 541, 560, 908
Psp6I	CCWGG	2 cut(s)	77, 852
PspFI	CCCAGC	1 cut(s)	481
PspGI	CCWGG	2 cut(s)	77, 852
PspN4I	GGNNCC	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	353
PstNI	CAGNNNCTG	1 cut(s)	733
PsuI	RGATCY	1 cut(s)	413
RsaI	GTAC	3 cut(s)	164, 242, 305
RsaNI	GTAC	3 cut(s)	163, 241, 304
RseI	CAYNNNNRTG	1 cut(s)	821
SalI	GTCGAC	3 cut(s)	197, 224, 779
SatI	GCNGC	7 cut(s)	248, 266, 477, 537, 562, 633, 768
Sau3AI	GATC	6 cut(s)	123, 128, 213, 413, 684, 724
Sau96I	GGNCC	1 cut(s)	353
SchI	GAGTC	5 cut(s)	92, 375, 541, 560, 908
ScrFI	CCNGG	3 cut(s)	79, 673, 854
SetI	ASST	9 cut(s)	92, 330, 351, 596, 607, 732, 744, 881, 903
SfaNI	GCATC	1 cut(s)	265
SfoI	GGCGCC	1 cut(s)	333
SgrAI	CRCCGGYG	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	821
Sse9I	AATT	3 cut(s)	430, 615, 796
SspDI	GGCGCC	1 cut(s)	331
SspMI	CTAG	1 cut(s)	665
StyD4I	CCNGG	3 cut(s)	77, 671, 852
StyI	CCWWGG	3 cut(s)	207, 279, 417
TaaI	ACNGT	3 cut(s)	374, 407, 447
TaqI	TCGA	8 cut(s)	141, 198, 225, 344, 434, 449, 573, 780
TasI	AATT	3 cut(s)	430, 615, 796
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	6 cut(s)	250, 268, 479, 539, 564, 770
TfiI	GAWTC	3 cut(s)	5, 111, 436
TscAI	CASTG	1 cut(s)	835
TseFI	GTSAC	2 cut(s)	424, 667
TseI	GCWGC	1 cut(s)	632
Tsp45I	GTSAC	2 cut(s)	424, 667
TspDTI	ATGAA	3 cut(s)	83, 482, 709
TspGWI	ACGGA	3 cut(s)	328, 689, 833
TspRI	CASTG	1 cut(s)	835
XapI	RAATTY	1 cut(s)	430
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XmiI	GTMKAC	3 cut(s)	198, 225, 780
XspI	CTAG	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.