Rh7BG138200

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0006012
Physical Location & Seq
Reverse (-)
10293813 .. 10303708
9896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG138200.1

Sequence Viewer

Length: 870 bp
ATGGATGCCCTGAAAGGCAAGCCAGCCATGAAGAAATCCTCCTCCATCAACTCCGACGACTCCGCCTGCACCGCCGGCTCCCCCCTCCGCTACCTCTCCCCCATGCGATCCGACGCCGGCGACCCCTCCGAATCCCCGCCCTACGGCTCCCCGGAGCTCTCCCCCCAGAAGCCGCCCCCCGACAACTCCAAGGCCATCATGGCCGTCGACAAGTTCACGCAGTACTCCCCCTCCCCCTTCCGCCCTCAGAAACCGCCCGAGAAGGCGCCCTCGCCGCTCGTCGTCTACAACAGCAACCGCGCCGCCAGGGAGGACCCCCCGCCCTCGGTGCCCAAGGCGGCCGCTCCTAACGGCGTGCCCTGGACTGCCGGAGGCGGCGCCGGGGTTGGGAGATCGAGGCGGCCGCCGAGGAGAGACGATGTGTTGACGACGGCCGCGCTGGGGTTTCGGGTTAGCGAGTTGGTGCTATGCTTGATTTCGTTCTCGGTTATGGCCGCTGATAAAACTCAGGGCTGGAGCGGCGATTCCTTTGATCGCTACAAGGAATACAGGTATTGTTTAGCTGTGACTGTTATTGGATTTGCATATGCTGCTTTTCAAGCATACAATCTATCCTACCATCTAGTCACCGGGAATTATGTGATCAGGCACCACCTTCGTCACCACTTTGATTTCTTCATGGATCAGGTACTGGCATATCTTCTCATTTCAGCATCATCATCGGCAGCCACCAGGGTCGACGACTGGCAATCAAATTGGGGAAAAGATGAGTTCACGGAGATGGCTACTGCTTCAGCGGCCCATTGGTATTTGAAACGCCTACGGCTCCTAACTGAGGAGTGGGCAGTCCATTGGTATTTAAAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

289

Amino Acids

32.0

Weight (kDa)

8.98

Isoelectric Point (pI)

55.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 141 - 267 8.9e-28 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 265, 328, 377, 648
AccBSI CCGCTC 3 cut(s) 277, 344, 519
AccI GTMKAC 3 cut(s) 207, 285, 738
AccII CGCG 2 cut(s) 300, 437
AclWI GGATC 2 cut(s) 102, 690
AcoI YGGCCR 5 cut(s) 201, 339, 401, 432, 492
AcuI CTGAAG 1 cut(s) 777
AcyI GRCGYC 3 cut(s) 114, 266, 378
AfaI GTAC 2 cut(s) 224, 690
AfiI CCNNNNNNNGG 5 cut(s) 143, 325, 387, 441, 835
AgsI TTSAA 2 cut(s) 599, 814
AjnI CCWGG 3 cut(s) 305, 359, 731
AluBI AGCT 2 cut(s) 157, 563
AluI AGCT 2 cut(s) 157, 563
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 1 cut(s) 408
AlwI GGATC 2 cut(s) 102, 690
AlwNI CAGNNNCTG 1 cut(s) 691
Ama87I CYCGRG 1 cut(s) 257
AoxI GGCC 7 cut(s) 192, 201, 339, 401, 432, 492, 798
ApeKI GCWGC 2 cut(s) 590, 725
AspLEI GCGC 4 cut(s) 268, 302, 380, 439
AspS9I GGNCC 2 cut(s) 313, 799
AsuC2I CCSGG 3 cut(s) 152, 382, 631
AsuHPI GGTGA 2 cut(s) 619, 653
AvaI CYCGRG 1 cut(s) 257
AvaII GGWCC 1 cut(s) 313
BaeGI GKGCMC 2 cut(s) 333, 360
BanI GGYRCC 4 cut(s) 265, 328, 377, 648
BanII GRGCYC 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 2 cut(s) 577, 737
BccI CCATC 4 cut(s) 53, 203, 627, 775
BceAI ACGGC 5 cut(s) 160, 188, 367, 447, 839
BcgI CGANNNNNNTGC 4 cut(s) 638, 672, 702, 736
BciT130I CCWGG 3 cut(s) 307, 361, 733
BclI TGATCA 1 cut(s) 642
BcnI CCSGG 3 cut(s) 152, 382, 631
BcoDI GTCTC 1 cut(s) 408
BfaI CTAG 1 cut(s) 623
BfoI RGCGCY 2 cut(s) 269, 381
BglI GCCNNNNNGGC 1 cut(s) 200
BmcAI AGTACT 1 cut(s) 224
Bme1390I CCNGG 6 cut(s) 152, 307, 361, 382, 631, 733
Bme18I GGWCC 1 cut(s) 313
BmeT110I CYCGRG 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 313, 799
BmiI GGNNCC 8 cut(s) 79, 148, 267, 315, 330, 379, 650, 827
BmrFI CCNGG 6 cut(s) 152, 307, 361, 382, 631, 733
BmsI GCATC 1 cut(s) 722
BpmI CTGGAG 1 cut(s) 535
BpuMI CCSGG 3 cut(s) 152, 382, 631
BsaHI GRCGYC 3 cut(s) 114, 266, 378
BsaJI CCNNGG 9 cut(s) 150, 189, 306, 324, 333, 359, 381, 407, 732
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 5 cut(s) 143, 325, 387, 441, 835
Bse118I RCCGGY 2 cut(s) 74, 116
Bse1I ACTGG 2 cut(s) 696, 749
BseBI CCWGG 3 cut(s) 307, 361, 733
BseDI CCNNGG 9 cut(s) 150, 189, 306, 324, 333, 359, 381, 407, 732
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 5 cut(s) 143, 325, 387, 441, 835
BseMII CTCAG 3 cut(s) 260, 521, 825
BseNI ACTGG 2 cut(s) 696, 749
BseRI GAGGAG 3 cut(s) 31, 424, 851
BseSI GKGCMC 2 cut(s) 333, 360
BseX3I CGGCCG 3 cut(s) 339, 401, 432
BseXI GCAGC 2 cut(s) 577, 737
BseYI CCCAGC 1 cut(s) 439
BsgI GTGCAG 1 cut(s) 52
Bsh1236I CGCG 2 cut(s) 300, 437
Bsh1285I CGRYCG 3 cut(s) 342, 404, 435
BshFI GGCC 7 cut(s) 194, 203, 341, 403, 434, 494, 800
BshNI GGYRCC 4 cut(s) 265, 328, 377, 648
BsiEI CGRYCG 3 cut(s) 342, 404, 435
BsiHKAI GWGCWC 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 257
BsiSI CCGG 6 cut(s) 75, 117, 152, 369, 381, 630
BslI CCNNNNNNNGG 5 cut(s) 143, 325, 387, 441, 835
BsmAI GTCTC 1 cut(s) 408
BsmBI CGTCTC 1 cut(s) 408
BsnI GGCC 7 cut(s) 194, 203, 341, 403, 434, 494, 800
BsoBI CYCGRG 1 cut(s) 257
Bsp1286I GDGCHC 3 cut(s) 159, 333, 360
Bsp143I GATC 5 cut(s) 107, 392, 532, 642, 682
BspANI GGCC 7 cut(s) 194, 203, 341, 403, 434, 494, 800
BspCNI CTCAG 3 cut(s) 259, 520, 826
BspFNI CGCG 2 cut(s) 300, 437
BspLI GGNNCC 8 cut(s) 79, 148, 267, 315, 330, 379, 650, 827
BspPI GGATC 2 cut(s) 102, 690
BspT107I GGYRCC 4 cut(s) 265, 328, 377, 648
BsrBI CCGCTC 3 cut(s) 277, 344, 519
BsrFI RCCGGY 2 cut(s) 74, 116
BsrI ACTGG 2 cut(s) 696, 749
BssAI RCCGGY 2 cut(s) 74, 116
BssECI CCNNGG 9 cut(s) 150, 189, 306, 324, 333, 359, 381, 407, 732
BssMI GATC 5 cut(s) 107, 392, 532, 642, 682
BssNI GRCGYC 3 cut(s) 114, 266, 378
BssT1I CCWWGG 2 cut(s) 189, 333
Bst2UI CCWGG 3 cut(s) 307, 361, 733
Bst4CI ACNGT 1 cut(s) 571
BstACI GRCGYC 3 cut(s) 114, 266, 378
BstAPI GCANNNNNTGC 1 cut(s) 590
BstC8I GCNNGC 6 cut(s) 20, 24, 67, 76, 118, 356
BstDEI CTNAG 3 cut(s) 246, 507, 834
BstENI CCTNNNNNAGG 1 cut(s) 833
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 2 cut(s) 300, 437
BstH2I RGCGCY 2 cut(s) 269, 381
BstHHI GCGC 4 cut(s) 268, 302, 380, 439
BstKTI GATC 5 cut(s) 110, 395, 535, 645, 685
BstMAI GTCTC 1 cut(s) 408
BstMBI GATC 5 cut(s) 107, 392, 532, 642, 682
BstMCI CGRYCG 3 cut(s) 342, 404, 435
BstMWI GCNNNNNNNGC 9 cut(s) 71, 75, 200, 274, 328, 519, 590, 599, 797
BstNI CCWGG 3 cut(s) 307, 361, 733
BstSCI CCNGG 6 cut(s) 150, 305, 359, 380, 629, 731
BstSLI GKGCMC 2 cut(s) 333, 360
BstUI CGCG 2 cut(s) 300, 437
BstV1I GCAGC 2 cut(s) 577, 737
BstZI CGGCCG 3 cut(s) 339, 401, 432
BsuRI GGCC 7 cut(s) 194, 203, 341, 403, 434, 494, 800
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 6 cut(s) 20, 24, 67, 76, 118, 356
CaiI CAGNNNCTG 1 cut(s) 691
CciNI GCGGCCGC 2 cut(s) 339, 401
CfoI GCGC 4 cut(s) 268, 302, 380, 439
Cfr10I RCCGGY 2 cut(s) 74, 116
Cfr13I GGNCC 2 cut(s) 313, 799
CseI GACGC 1 cut(s) 122
Csp6I GTAC 2 cut(s) 223, 689
CviAII CATG 4 cut(s) 28, 103, 199, 679
CviQI GTAC 2 cut(s) 223, 689
DdeI CTNAG 3 cut(s) 246, 507, 834
DinI GGCGCC 2 cut(s) 267, 379
DpnI GATC 5 cut(s) 109, 394, 534, 644, 684
DpnII GATC 5 cut(s) 107, 392, 532, 642, 682
DraI TTTAAA 1 cut(s) 861
EaeI YGGCCR 5 cut(s) 201, 339, 401, 432, 492
EagI CGGCCG 3 cut(s) 339, 401, 432
EciI GGCGGA 2 cut(s) 52, 230
Ecl136II GAGCTC 1 cut(s) 157
EclXI CGGCCG 3 cut(s) 339, 401, 432
Eco130I CCWWGG 2 cut(s) 189, 333
Eco24I GRGCYC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 313
Eco52I CGGCCG 3 cut(s) 339, 401, 432
Eco53kI GAGCTC 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 777
Eco88I CYCGRG 1 cut(s) 257
EcoICRI GAGCTC 1 cut(s) 157
EcoNI CCTNNNNNAGG 1 cut(s) 833
EcoO109I RGGNCCY 1 cut(s) 313
EcoRII CCWGG 3 cut(s) 305, 359, 731
EcoT14I CCWWGG 2 cut(s) 189, 333
EcoT38I GRGCYC 1 cut(s) 159
EgeI GGCGCC 2 cut(s) 267, 379
EheI GGCGCC 2 cut(s) 267, 379
ErhI CCWWGG 2 cut(s) 189, 333
Esp3I CGTCTC 1 cut(s) 408
FaeI CATG 4 cut(s) 31, 106, 202, 682
FatI CATG 4 cut(s) 27, 102, 198, 678
FauI CCCGC 2 cut(s) 144, 327
FauNDI CATATG 1 cut(s) 586
FbaI TGATCA 1 cut(s) 642
FblI GTMKAC 3 cut(s) 207, 285, 738
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 159
FspBI CTAG 1 cut(s) 623
GlaI GCGC 4 cut(s) 267, 301, 379, 438
GsaI CCCAGC 1 cut(s) 443
GsuI CTGGAG 1 cut(s) 535
HaeII RGCGCY 2 cut(s) 269, 381
HaeIII GGCC 7 cut(s) 194, 203, 341, 403, 434, 494, 800
HapII CCGG 6 cut(s) 75, 117, 152, 369, 381, 630
HgaI GACGC 1 cut(s) 122
HhaI GCGC 4 cut(s) 268, 302, 380, 439
Hin1I GRCGYC 3 cut(s) 114, 266, 378
Hin1II CATG 4 cut(s) 31, 106, 202, 682
Hin6I GCGC 4 cut(s) 266, 300, 378, 437
HinP1I GCGC 4 cut(s) 266, 300, 378, 437
HincII GTYRAC 3 cut(s) 208, 426, 739
HindII GTYRAC 3 cut(s) 208, 426, 739
HinfI GANTC 3 cut(s) 59, 131, 524
HpaII CCGG 6 cut(s) 75, 117, 152, 369, 381, 630
HphI GGTGA 2 cut(s) 619, 653
Hpy166II GTNNAC 6 cut(s) 208, 216, 286, 426, 739, 774
Hpy188I TCNGA 4 cut(s) 55, 112, 130, 249
Hpy8I GTNNAC 6 cut(s) 208, 216, 286, 426, 739, 774
Hpy99I CGWCG 6 cut(s) 59, 116, 209, 284, 433, 743
HpyAV CCTTC 3 cut(s) 247, 256, 665
HpyCH4III ACNGT 1 cut(s) 571
HpyCH4V TGCA 2 cut(s) 69, 584
HpyF10VI GCNNNNNNNGC 9 cut(s) 71, 75, 200, 274, 328, 519, 590, 599, 797
HpyF3I CTNAG 3 cut(s) 246, 507, 834
Hsp92I GRCGYC 3 cut(s) 114, 266, 378
Hsp92II CATG 4 cut(s) 31, 106, 202, 682
HspAI GCGC 4 cut(s) 266, 300, 378, 437
KasI GGCGCC 2 cut(s) 265, 377
KroI GCCGGC 2 cut(s) 74, 116
KroNI GCCGGC 2 cut(s) 76, 118
Ksp22I TGATCA 1 cut(s) 642
Kzo9I GATC 5 cut(s) 107, 392, 532, 642, 682
LmnI GCTCC 6 cut(s) 83, 152, 154, 349, 516, 831
Lsp1109I GCAGC 2 cut(s) 577, 737
LweI GCATC 1 cut(s) 722
MaeI CTAG 1 cut(s) 623
MaeIII GTNAC 3 cut(s) 565, 625, 659
MalI GATC 5 cut(s) 109, 394, 534, 644, 684
MbiI CCGCTC 3 cut(s) 277, 344, 519
MboI GATC 5 cut(s) 107, 392, 532, 642, 682
MboII GAAGA 3 cut(s) 43, 667, 692
MhlI GDGCHC 3 cut(s) 159, 333, 360
MluCI AATT 2 cut(s) 634, 754
Mly113I GGCGCC 2 cut(s) 266, 378
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 2 cut(s) 78, 135
MreI CGCCGGCG 1 cut(s) 116
MroNI GCCGGC 2 cut(s) 74, 116
MseI TTAA 1 cut(s) 860
MslI CAYNNNNRTG 1 cut(s) 779
MspA1I CMGCKG 2 cut(s) 497, 797
MspI CCGG 6 cut(s) 75, 117, 152, 369, 381, 630
MspR9I CCNGG 6 cut(s) 152, 307, 361, 382, 631, 733
MvaI CCWGG 3 cut(s) 307, 361, 733
MvnI CGCG 2 cut(s) 300, 437
MwoI GCNNNNNNNGC 9 cut(s) 71, 75, 200, 274, 328, 519, 590, 599, 797
NaeI GCCGGC 2 cut(s) 76, 118
NarI GGCGCC 2 cut(s) 266, 378
NciI CCSGG 3 cut(s) 152, 382, 631
NdeI CATATG 1 cut(s) 586
NdeII GATC 5 cut(s) 107, 392, 532, 642, 682
NgoMIV GCCGGC 2 cut(s) 74, 116
NlaIII CATG 4 cut(s) 31, 106, 202, 682
NlaIV GGNNCC 8 cut(s) 79, 148, 267, 315, 330, 379, 650, 827
NmeAIII GCCGAG 1 cut(s) 432
NmuCI GTSAC 3 cut(s) 565, 625, 659
NotI GCGGCCGC 2 cut(s) 339, 401
PdiI GCCGGC 2 cut(s) 76, 118
PfeI GAWTC 2 cut(s) 131, 524
PleI GAGTC 1 cut(s) 53
PluTI GGCGCC 2 cut(s) 269, 381
PpsI GAGTC 1 cut(s) 53
PpuMI RGGWCCY 1 cut(s) 313
Psp124BI GAGCTC 1 cut(s) 159
Psp5II RGGWCCY 1 cut(s) 313
Psp6I CCWGG 3 cut(s) 305, 359, 731
PspFI CCCAGC 1 cut(s) 439
PspGI CCWGG 3 cut(s) 305, 359, 731
PspN4I GGNNCC 8 cut(s) 79, 148, 267, 315, 330, 379, 650, 827
PspPI GGNCC 2 cut(s) 313, 799
PspPPI RGGWCCY 1 cut(s) 313
PstNI CAGNNNCTG 1 cut(s) 691
RsaI GTAC 2 cut(s) 224, 690
RsaNI GTAC 2 cut(s) 223, 689
RseI CAYNNNNRTG 1 cut(s) 779
SacI GAGCTC 1 cut(s) 159
SalI GTCGAC 2 cut(s) 206, 737
SaqAI TTAA 1 cut(s) 860
Sau3AI GATC 5 cut(s) 107, 392, 532, 642, 682
Sau96I GGNCC 2 cut(s) 313, 799
ScaI AGTACT 1 cut(s) 224
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 6 cut(s) 152, 307, 361, 382, 631, 733
SduI GDGCHC 3 cut(s) 159, 333, 360
SetI ASST 6 cut(s) 96, 159, 554, 565, 657, 690
SfaNI GCATC 1 cut(s) 722
SfiI GGCCNNNNNGGCC 1 cut(s) 200
SfoI GGCGCC 2 cut(s) 267, 379
SgrAI CRCCGGYG 1 cut(s) 116
SinI GGWCC 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 779
Sse9I AATT 2 cut(s) 634, 754
SspDI GGCGCC 2 cut(s) 265, 377
SspMI CTAG 1 cut(s) 623
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 6 cut(s) 150, 305, 359, 380, 629, 731
StyI CCWWGG 2 cut(s) 189, 333
TaaI ACNGT 1 cut(s) 571
TaqI TCGA 3 cut(s) 207, 395, 738
TasI AATT 2 cut(s) 634, 754
TatI WGTACW 1 cut(s) 222
TfiI GAWTC 2 cut(s) 131, 524
Tru1I TTAA 1 cut(s) 860
Tru9I TTAA 1 cut(s) 860
TseFI GTSAC 3 cut(s) 565, 625, 659
TseI GCWGC 2 cut(s) 590, 725
Tsp45I GTSAC 3 cut(s) 565, 625, 659
TspDTI ATGAA 2 cut(s) 44, 667
TspGWI ACGGA 1 cut(s) 791
VpaK11BI GGWCC 1 cut(s) 313
XagI CCTNNNNNAGG 1 cut(s) 833
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XmiI GTMKAC 3 cut(s) 207, 285, 738
XspI CTAG 1 cut(s) 623
ZrmI AGTACT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.