Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007507

Physical Location & Seq

Genomic Coordinates Reverse (-)

20111755 .. 20112885

Gene Structure 1131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g15600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAAGAATTTCCACTGGTATAAGCAGATTTCCAACAATGGCAAGCTGGAGAGGAGGCTCTCCCTCGGCGAGTATAACCGTGCAGTCTCATGGTCCAAGTACTTGGTGTCCTCAGGGGCTGAGATTAAAGGGGAAGGAGAGGAGTGGAGTGCTGACATGTCACAGTTGTACATTGGGTGTAAATTTGCTTCGGGAAGGCATAGCAGGATTTACAGAGGGGTTTATAAGCAGAGGGATGTGGCGATTAAGCTGATCAGCCAGCCTGAGGAAGATGAAGGGTTGGCTGTTTTGCTTGAGAAGCAGTTCACTTCTGAGGTTGCTTTGCTCTTTCGTTTGCACCATCCTAATATCATCACTTTTGTTGCTGCTTGTAAGAAACCTCCAGTGTTCTGCATTATCACTGAGTATTTAGCTGGGGGATCATTAAGAAAATATCTTCATCAGCAGGATCCACATTCTGTTCCGCTTAGCCTAGTTGTGAAATTAGCCCTCGACATTGCTCGTGGGATGCAATATCTCCATTCTCAAAGTATACTTCATAGGATCGATCGATCAAGTCAGAAAATTTATTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

192

Amino Acids

21.88

Weight (kDa)

9.33

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007507)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05240 FvH4_5g05240 FvH4_5g05240
malus_domestica	MD06G1175200.v1.1 MD14G1182000.v1.1
prunus_persica	Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1
pyrus_communis	pycom06g15600 pycom14g15100
rosa_chinensis	RchiOBHm_Chr7g0193661
rosa_laevigata	RLG00000004253
rosa_multiflora	Rmu_sc0001436.1_g000007
rosa_roxburghii	Rroxscaffold_3G00261930
rosa_rugosa	Rorug07G0011200 Rorug07G0011300 Rorug07G0011300
rosa_samantha	Rh7AG137900 Rh7BG138100 Rh7CG141800 Rh7DG139200
rosa_wichuraiana	Rw7G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	225
AccI	GTMKAC	1 cut(s)	532
AciI	CCGC	1 cut(s)	464
AclWI	GGATC	4 cut(s)	427, 443, 456, 551
AcsI	RAATTY	3 cut(s)	7, 182, 564
AfaI	GTAC	2 cut(s)	101, 170
AfiI	CCNNNNNNNGG	1 cut(s)	265
AflIII	ACRYGT	1 cut(s)	156
AluBI	AGCT	3 cut(s)	46, 250, 413
AluI	AGCT	3 cut(s)	46, 250, 413
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	4 cut(s)	427, 443, 456, 551
AlwNI	CAGNNNCTG	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	365
ApoI	RAATTY	3 cut(s)	7, 182, 564
Asp700I	GAANNNNTTC	2 cut(s)	8, 302
AspS9I	GGNCC	1 cut(s)	93
AvaII	GGWCC	1 cut(s)	93
AxyI	CCTNAGG	2 cut(s)	112, 264
BamHI	GGATCC	1 cut(s)	448
BarI	GAAGNNNNNNTAC	2 cut(s)	172, 204
BauI	CACGAG	1 cut(s)	501
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	1 cut(s)	348
BclI	TGATCA	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	2 cut(s)	473, 574
BisI	GCNGC	1 cut(s)	366
BlpI	GCTNAGC	1 cut(s)	467
BlsI	GCNGC	1 cut(s)	367
BmcAI	AGTACT	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	450
BmsI	GCATC	1 cut(s)	498
BpmI	CTGGAG	2 cut(s)	68, 366
Bpu1102I	GCTNAGC	1 cut(s)	467
BpuEI	CTTGAG	1 cut(s)	314
Bsa29I	ATCGAT	2 cut(s)	546, 550
BsaJI	CCNNGG	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	2 cut(s)	20, 383
Bse21I	CCTNAGG	2 cut(s)	112, 264
Bse3DI	GCAATG	1 cut(s)	495
BseCI	ATCGAT	2 cut(s)	546, 550
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	3 cut(s)	241, 340, 513
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMI	GCAATG	1 cut(s)	495
BseMII	CTCAG	5 cut(s)	111, 126, 255, 303, 393
BseNI	ACTGG	2 cut(s)	20, 383
BseRI	GAGGAG	2 cut(s)	67, 155
BseXI	GCAGC	1 cut(s)	352
BseYI	CCCAGC	1 cut(s)	413
BsgI	GTGCAG	1 cut(s)	102
Bsh1285I	CGRYCG	1 cut(s)	550
BshVI	ATCGAT	2 cut(s)	546, 550
BsiEI	CGRYCG	1 cut(s)	550
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	1 cut(s)	91
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	6 cut(s)	252, 419, 448, 543, 547, 551
Bsp1720I	GCTNAGC	1 cut(s)	467
BspACI	CCGC	1 cut(s)	464
BspCNI	CTCAG	5 cut(s)	112, 125, 256, 304, 394
BspDI	ATCGAT	2 cut(s)	546, 550
BspLI	GGNNCC	1 cut(s)	450
BspPI	GGATC	4 cut(s)	427, 443, 456, 551
BsrDI	GCAATG	1 cut(s)	495
BsrGI	TGTACA	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	20, 383
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	6 cut(s)	252, 419, 448, 543, 547, 551
BssNAI	GTATAC	1 cut(s)	533
BssSI	CACGAG	1 cut(s)	501
Bst1107I	GTATAC	1 cut(s)	533
Bst2BI	CACGAG	1 cut(s)	501
Bst4CI	ACNGT	2 cut(s)	80, 165
BstAUI	TGTACA	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	44, 260
BstDEI	CTNAG	6 cut(s)	112, 120, 264, 312, 402, 467
BstF5I	GGATG	3 cut(s)	241, 340, 513
BstKTI	GATC	6 cut(s)	255, 422, 451, 546, 550, 554
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	6 cut(s)	252, 419, 448, 543, 547, 551
BstMCI	CGRYCG	1 cut(s)	550
BstMWI	GCNNNNNNNGC	1 cut(s)	298
BstNSI	RCATGY	1 cut(s)	160
BstV1I	GCAGC	1 cut(s)	352
BstX2I	RGATCY	1 cut(s)	448
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	448
BstZ17I	GTATAC	1 cut(s)	533
Bsu15I	ATCGAT	2 cut(s)	546, 550
Bsu36I	CCTNAGG	2 cut(s)	112, 264
BsuTUI	ATCGAT	2 cut(s)	546, 550
BtsCI	GGATG	3 cut(s)	241, 340, 513
BtsIMutI	CAGTG	3 cut(s)	13, 390, 399
Cac8I	GCNNGC	2 cut(s)	44, 260
CaiI	CAGNNNCTG	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	93
ClaI	ATCGAT	2 cut(s)	546, 550
Csp6I	GTAC	2 cut(s)	100, 169
CviAII	CATG	2 cut(s)	90, 157
CviQI	GTAC	2 cut(s)	100, 169
DdeI	CTNAG	6 cut(s)	112, 120, 264, 312, 402, 467
DpnI	GATC	6 cut(s)	254, 421, 450, 545, 549, 553
DpnII	GATC	6 cut(s)	252, 419, 448, 543, 547, 551
Eco47I	GGWCC	1 cut(s)	93
Eco81I	CCTNAGG	2 cut(s)	112, 264
FaeI	CATG	2 cut(s)	93, 160
FaiI	YATR	8 cut(s)	21, 75, 91, 158, 201, 225, 533, 540
FatI	CATG	2 cut(s)	89, 156
FbaI	TGATCA	1 cut(s)	252
FblI	GTMKAC	1 cut(s)	532
Fnu4HI	GCNGC	1 cut(s)	366
FokI	GGATG	3 cut(s)	248, 327, 520
Fsp4HI	GCNGC	1 cut(s)	366
FspBI	CTAG	2 cut(s)	473, 574
GluI	GCNGC	1 cut(s)	366
GsaI	CCCAGC	1 cut(s)	417
GsuI	CTGGAG	2 cut(s)	68, 366
Hin1II	CATG	2 cut(s)	93, 160
Hpy166II	GTNNAC	2 cut(s)	306, 533
Hpy188I	TCNGA	2 cut(s)	313, 561
Hpy188III	TCNNGA	1 cut(s)	192
Hpy8I	GTNNAC	2 cut(s)	306, 533
HpyAV	CCTTC	3 cut(s)	128, 189, 269
HpyCH4III	ACNGT	2 cut(s)	80, 165
HpyCH4V	TGCA	4 cut(s)	83, 337, 393, 511
HpyF10VI	GCNNNNNNNGC	1 cut(s)	298
HpyF3I	CTNAG	6 cut(s)	112, 120, 264, 312, 402, 467
Hsp92II	CATG	2 cut(s)	93, 160
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	6 cut(s)	252, 419, 448, 543, 547, 551
LpnPI	CCDG	8 cut(s)	32, 99, 190, 272, 276, 396, 399, 431
Lsp1109I	GCAGC	1 cut(s)	352
LweI	GCATC	1 cut(s)	498
MaeI	CTAG	2 cut(s)	473, 574
MaeIII	GTNAC	1 cut(s)	159
MalI	GATC	6 cut(s)	254, 421, 450, 545, 549, 553
MboI	GATC	6 cut(s)	252, 419, 448, 543, 547, 551
MboII	GAAGA	3 cut(s)	16, 281, 428
MflI	RGATCY	1 cut(s)	448
MluCI	AATT	4 cut(s)	7, 182, 482, 564
MmeI	TCCRAC	1 cut(s)	57
MroXI	GAANNNNTTC	2 cut(s)	8, 302
MseI	TTAA	3 cut(s)	126, 246, 425
MwoI	GCNNNNNNNGC	1 cut(s)	298
NdeII	GATC	6 cut(s)	252, 419, 448, 543, 547, 551
NlaIII	CATG	2 cut(s)	93, 160
NlaIV	GGNNCC	1 cut(s)	450
NmeAIII	GCCGAG	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	159
NspI	RCATGY	1 cut(s)	160
PciI	ACATGT	1 cut(s)	156
PdmI	GAANNNNTTC	2 cut(s)	8, 302
PkrI	GCNGC	1 cut(s)	367
Ple19I	CGATCG	1 cut(s)	550
PscI	ACATGT	1 cut(s)	156
PsiI	TTATAA	1 cut(s)	225
PspFI	CCCAGC	1 cut(s)	413
PspN4I	GGNNCC	1 cut(s)	450
PspPI	GGNCC	1 cut(s)	93
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	448
PvuI	CGATCG	1 cut(s)	550
RsaI	GTAC	2 cut(s)	101, 170
RsaNI	GTAC	2 cut(s)	100, 169
SaqAI	TTAA	3 cut(s)	126, 246, 425
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	6 cut(s)	252, 419, 448, 543, 547, 551
Sau96I	GGNCC	1 cut(s)	93
ScaI	AGTACT	1 cut(s)	101
SetI	ASST	5 cut(s)	48, 252, 318, 382, 415
SfaNI	GCATC	1 cut(s)	498
SinI	GGWCC	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	4 cut(s)	7, 182, 482, 564
SsiI	CCGC	1 cut(s)	464
SspMI	CTAG	2 cut(s)	473, 574
TaaI	ACNGT	2 cut(s)	80, 165
TaqI	TCGA	3 cut(s)	492, 546, 550
TasI	AATT	4 cut(s)	7, 182, 482, 564
TatI	WGTACW	2 cut(s)	99, 168
Tru1I	TTAA	3 cut(s)	126, 246, 425
Tru9I	TTAA	3 cut(s)	126, 246, 425
TscAI	CASTG	3 cut(s)	20, 390, 406
TseFI	GTSAC	1 cut(s)	159
TseI	GCWGC	1 cut(s)	365
Tsp45I	GTSAC	1 cut(s)	159
TspDTI	ATGAA	4 cut(s)	17, 288, 428, 527
TspRI	CASTG	3 cut(s)	20, 390, 406
VpaK11BI	GGWCC	1 cut(s)	93
XapI	RAATTY	3 cut(s)	7, 182, 564
XceI	RCATGY	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	532
XmnI	GAANNNNTTC	2 cut(s)	8, 302
XspI	CTAG	2 cut(s)	473, 574
ZrmI	AGTACT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.