Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0007507

Physical Location & Seq

Genomic Coordinates Reverse (-)

31483806 .. 31488019

Gene Structure 4214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1175200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAAGAATTTCCACTGGTTTAAGCAGATTTCCAACAATGGCAAGCTGGAGAGGAGGCTCTCCCTCGGCGAGTATAACCGTGCAGTGTCATGGTCCAAGTACTTGGTATCCTCAGGGGCTGAGATTAAAGGGGAAGGAGAGGAGTGGAGTGCTGACATGTCACAGTTGTACATTGGATGTAAATTTGCTTCGGGAAGGCATAGCAGGATTTACAGAGGGGTTTATAAGCAGAGGGATGTGGCGATTAAGCTGATTAGCCAGCCTGAGGAAGATGAAGGGTTGGCTGTTTTGCTTGAGAAGCAGTTCACTTCTGAGGTTGCTTTGCTCTTTCGTTTGCACCATCCTAATATCATCACTTTCTTTTTTTTTGTTGCAGCTTGTAAGAAACCTCCAGTGTTCTGCATTATCACTGAGTATTTAGCTGGGGGATCATTAAGAAAATATCTTCATCAGCAGGATCCACATTCTGTTCCGCTTAGCCTAGTTGTGAAATTAGCCCTCGACATTGCTCGTGGGATGCAATATCTCCATTCTCAAAGTATACTTCATAGGGATCTCAAGTCAGAAAATTTATTGCTAGGGGAAGATATGTCTGTGAAAGTTGCAGATTTTGGTATTTCATGCCTAGAGTCACAGTGTGGCAGTGCAAAGGGATTCACGGGCACTTACCGTTGGATGGCACCCGAAATGATCAAAGAGAAACACCATACAAAGAAAGTTGATGTTTACAGTTTTGGAATAGTTCTGTGGGAGCTTTTAACGGCATTGACACCATTTGACAACATGACTCCTGAACAGGCTGCATTTGCAGTATCGCAGAAGAATGCAAGACCCCCATTGCCGTCCACATGCCCAGCGCCTTTCAGTCGTCTCATCAGCCGATGTTGGTCAAGCCATCCGGACAAGCGGCCTCATTTCAACGAGATAGTGCACATTTTGGAAGGTTATGCTGAGTCCCTTGAGCAGGACCCGGATTTCTTCTCCTCTTACGAGCCACCGGAAAATCACGCCCTATCGCGATGCTTTCCGAAATGGACGGGTCGCCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

350

Amino Acids

39.82

Weight (kDa)

8.51

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	60 - 313	1.4e-61	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	64 - 311	3.5e-52	Protein kinase domain
Pkinase_fungal	PF17667	168 - 249	2.9e-06	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007507)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05240 FvH4_5g05240 FvH4_5g05240
malus_domestica	MD06G1175200.v1.1 MD14G1182000.v1.1
prunus_persica	Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1
pyrus_communis	pycom06g15600 pycom14g15100
rosa_chinensis	RchiOBHm_Chr7g0193661
rosa_laevigata	RLG00000004253
rosa_multiflora	Rmu_sc0001436.1_g000007
rosa_roxburghii	Rroxscaffold_3G00261930
rosa_rugosa	Rorug07G0011200 Rorug07G0011300 Rorug07G0011300
rosa_samantha	Rh7AG137900 Rh7BG138100 Rh7CG141800 Rh7DG139200
rosa_wichuraiana	Rw7G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	225
AccB1I	GGYRCC	1 cut(s)	679
AccI	GTMKAC	1 cut(s)	541
AccII	CGCG	1 cut(s)	1018
AccIII	TCCGGA	1 cut(s)	898
AciI	CCGC	2 cut(s)	473, 907
AclWI	GGATC	4 cut(s)	436, 452, 465, 561
AcsI	RAATTY	3 cut(s)	7, 182, 568
AdeI	CACNNNGTG	1 cut(s)	638
AfaI	GTAC	2 cut(s)	101, 170
AfiI	CCNNNNNNNGG	3 cut(s)	265, 676, 964
AflIII	ACRYGT	1 cut(s)	156
AgsI	TTSAA	1 cut(s)	919
AluBI	AGCT	5 cut(s)	46, 250, 377, 422, 754
AluI	AGCT	5 cut(s)	46, 250, 377, 422, 754
Alw21I	GWGCWC	1 cut(s)	933
Alw26I	GTCTC	1 cut(s)	875
Alw44I	GTGCAC	1 cut(s)	929
AlwI	GGATC	4 cut(s)	436, 452, 465, 561
AlwNI	CAGNNNCTG	1 cut(s)	119
Aor13HI	TCCGGA	1 cut(s)	898
AoxI	GGCC	1 cut(s)	908
ApaLI	GTGCAC	1 cut(s)	929
ApeKI	GCWGC	2 cut(s)	374, 800
ApoI	RAATTY	3 cut(s)	7, 182, 568
Asp700I	GAANNNNTTC	2 cut(s)	8, 302
AspLEI	GCGC	1 cut(s)	859
AspS9I	GGNCC	2 cut(s)	93, 967
AsuC2I	CCSGG	1 cut(s)	971
AvaII	GGWCC	2 cut(s)	93, 967
AxyI	CCTNAGG	2 cut(s)	112, 264
BaeGI	GKGCMC	2 cut(s)	665, 933
BamHI	GGATCC	1 cut(s)	457
BanI	GGYRCC	1 cut(s)	679
BarI	GAAGNNNNNNTAC	2 cut(s)	172, 204
BauI	CACGAG	1 cut(s)	510
Bbv12I	GWGCWC	1 cut(s)	933
BbvI	GCAGC	2 cut(s)	386, 787
BccI	CCATC	3 cut(s)	348, 670, 903
BceAI	ACGGC	2 cut(s)	777, 826
BciVI	GTATCC	1 cut(s)	118
BclI	TGATCA	1 cut(s)	690
BcnI	CCSGG	1 cut(s)	971
BcoDI	GTCTC	1 cut(s)	875
BfaI	CTAG	3 cut(s)	482, 578, 626
BfoI	RGCGCY	1 cut(s)	860
BfuI	GTATCC	1 cut(s)	118
BisI	GCNGC	3 cut(s)	375, 801, 908
BlpI	GCTNAGC	1 cut(s)	476
BlsI	GCNGC	3 cut(s)	376, 802, 909
BmcAI	AGTACT	1 cut(s)	101
Bme1390I	CCNGG	1 cut(s)	971
Bme18I	GGWCC	2 cut(s)	93, 967
BmgT120I	GGNCC	2 cut(s)	93, 967
BmiI	GGNNCC	3 cut(s)	459, 681, 969
BmrFI	CCNGG	1 cut(s)	971
BmsI	GCATC	2 cut(s)	507, 1010
BpmI	CTGGAG	2 cut(s)	68, 375
Bpu1102I	GCTNAGC	1 cut(s)	476
BpuEI	CTTGAG	3 cut(s)	314, 542, 980
BpuMI	CCSGG	1 cut(s)	971
BsaJI	CCNNGG	1 cut(s)	64
BsaWI	WCCGGW	2 cut(s)	898, 997
Bsc4I	CCNNNNNNNGG	3 cut(s)	265, 676, 964
Bse118I	RCCGGY	1 cut(s)	1044
Bse1I	ACTGG	2 cut(s)	20, 392
Bse21I	CCTNAGG	2 cut(s)	112, 264
Bse3DI	GCAATG	2 cut(s)	504, 836
BseAI	TCCGGA	1 cut(s)	898
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	6 cut(s)	182, 241, 340, 522, 681, 895
BseLI	CCNNNNNNNGG	3 cut(s)	265, 676, 964
BseMI	GCAATG	2 cut(s)	504, 836
BseMII	CTCAG	6 cut(s)	111, 126, 255, 303, 402, 942
BseNI	ACTGG	2 cut(s)	20, 392
BseRI	GAGGAG	3 cut(s)	67, 155, 973
BseSI	GKGCMC	2 cut(s)	665, 933
BseXI	GCAGC	2 cut(s)	386, 787
BseYI	CCCAGC	2 cut(s)	422, 853
BsgI	GTGCAG	1 cut(s)	102
Bsh1236I	CGCG	1 cut(s)	1018
BshFI	GGCC	1 cut(s)	910
BshNI	GGYRCC	1 cut(s)	679
BsiHKAI	GWGCWC	1 cut(s)	933
BsiSI	CCGG	4 cut(s)	899, 971, 998, 1045
BslFI	GGGAC	1 cut(s)	940
BslI	CCNNNNNNNGG	3 cut(s)	265, 676, 964
BsmAI	GTCTC	1 cut(s)	875
BsmBI	CGTCTC	1 cut(s)	875
BsmFI	GGGAC	1 cut(s)	940
BsmI	GAATGC	1 cut(s)	829
BsnI	GGCC	1 cut(s)	910
Bsp1286I	GDGCHC	2 cut(s)	665, 933
Bsp13I	TCCGGA	1 cut(s)	898
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	4 cut(s)	428, 457, 553, 690
Bsp1720I	GCTNAGC	1 cut(s)	476
Bsp68I	TCGCGA	1 cut(s)	1018
BspACI	CCGC	2 cut(s)	473, 907
BspANI	GGCC	1 cut(s)	910
BspCNI	CTCAG	6 cut(s)	112, 125, 256, 304, 403, 943
BspEI	TCCGGA	1 cut(s)	898
BspFNI	CGCG	1 cut(s)	1018
BspLI	GGNNCC	3 cut(s)	459, 681, 969
BspPI	GGATC	4 cut(s)	436, 452, 465, 561
BspT107I	GGYRCC	1 cut(s)	679
BsrDI	GCAATG	2 cut(s)	504, 836
BsrFI	RCCGGY	1 cut(s)	1044
BsrGI	TGTACA	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	20, 392
BssAI	RCCGGY	1 cut(s)	1044
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	4 cut(s)	428, 457, 553, 690
BssNAI	GTATAC	1 cut(s)	542
BssSI	CACGAG	1 cut(s)	510
Bst1107I	GTATAC	1 cut(s)	542
Bst2BI	CACGAG	1 cut(s)	510
Bst4CI	ACNGT	5 cut(s)	80, 165, 636, 671, 731
BstAUI	TGTACA	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	44, 260
BstDEI	CTNAG	7 cut(s)	112, 120, 264, 312, 411, 476, 951
BstENI	CCTNNNNNAGG	1 cut(s)	962
BstF5I	GGATG	6 cut(s)	182, 241, 340, 522, 681, 895
BstFNI	CGCG	1 cut(s)	1018
BstH2I	RGCGCY	1 cut(s)	860
BstHHI	GCGC	1 cut(s)	859
BstKTI	GATC	4 cut(s)	431, 460, 556, 693
BstMAI	GTCTC	1 cut(s)	875
BstMBI	GATC	4 cut(s)	428, 457, 553, 690
BstMWI	GCNNNNNNNGC	2 cut(s)	298, 806
BstNSI	RCATGY	2 cut(s)	160, 852
BstSCI	CCNGG	1 cut(s)	969
BstSLI	GKGCMC	2 cut(s)	665, 933
BstUI	CGCG	1 cut(s)	1018
BstV1I	GCAGC	2 cut(s)	386, 787
BstX2I	RGATCY	2 cut(s)	457, 553
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	2 cut(s)	457, 553
BstZ17I	GTATAC	1 cut(s)	542
Bsu36I	CCTNAGG	2 cut(s)	112, 264
BsuI	GTATCC	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	910
BtgZI	GCGATG	1 cut(s)	1033
BtsCI	GGATG	6 cut(s)	182, 241, 340, 522, 681, 895
BtsI	GCAGTG	2 cut(s)	90, 649
BtsIMutI	CAGTG	6 cut(s)	13, 90, 399, 408, 641, 649
BtuMI	TCGCGA	1 cut(s)	1018
Cac8I	GCNNGC	2 cut(s)	44, 260
CaiI	CAGNNNCTG	1 cut(s)	119
CfoI	GCGC	1 cut(s)	859
Cfr10I	RCCGGY	1 cut(s)	1044
Cfr13I	GGNCC	2 cut(s)	93, 967
Csp6I	GTAC	2 cut(s)	100, 169
CviAII	CATG	5 cut(s)	90, 157, 621, 784, 849
CviQI	GTAC	2 cut(s)	100, 169
DdeI	CTNAG	7 cut(s)	112, 120, 264, 312, 411, 476, 951
DpnI	GATC	4 cut(s)	430, 459, 555, 692
DpnII	GATC	4 cut(s)	428, 457, 553, 690
DraIII	CACNNNGTG	1 cut(s)	638
Eco47I	GGWCC	2 cut(s)	93, 967
Eco81I	CCTNAGG	2 cut(s)	112, 264
EcoNI	CCTNNNNNAGG	1 cut(s)	962
EcoO109I	RGGNCCY	1 cut(s)	967
Esp3I	CGTCTC	1 cut(s)	875
FaeI	CATG	5 cut(s)	93, 160, 624, 787, 852
FaqI	GGGAC	1 cut(s)	940
FatI	CATG	5 cut(s)	89, 156, 620, 783, 848
FbaI	TGATCA	1 cut(s)	690
FblI	GTMKAC	1 cut(s)	541
Fnu4HI	GCNGC	3 cut(s)	375, 801, 908
FokI	GGATG	6 cut(s)	189, 248, 327, 529, 688, 882
Fsp4HI	GCNGC	3 cut(s)	375, 801, 908
FspBI	CTAG	3 cut(s)	482, 578, 626
GlaI	GCGC	1 cut(s)	858
GluI	GCNGC	3 cut(s)	375, 801, 908
GsaI	CCCAGC	2 cut(s)	426, 857
GsuI	CTGGAG	2 cut(s)	68, 375
HaeII	RGCGCY	1 cut(s)	860
HaeIII	GGCC	1 cut(s)	910
HapII	CCGG	4 cut(s)	899, 971, 998, 1045
HhaI	GCGC	1 cut(s)	859
Hin1II	CATG	5 cut(s)	93, 160, 624, 787, 852
Hin6I	GCGC	1 cut(s)	857
HinP1I	GCGC	1 cut(s)	857
HinfI	GANTC	4 cut(s)	629, 654, 787, 953
HpaII	CCGG	4 cut(s)	899, 971, 998, 1045
Hpy166II	GTNNAC	5 cut(s)	306, 542, 727, 846, 931
Hpy188I	TCNGA	3 cut(s)	313, 565, 1029
Hpy188III	TCNNGA	4 cut(s)	192, 791, 899, 1017
Hpy8I	GTNNAC	5 cut(s)	306, 542, 727, 846, 931
HpyAV	CCTTC	4 cut(s)	128, 189, 269, 935
HpyCH4III	ACNGT	5 cut(s)	80, 165, 636, 671, 731
HpyF10VI	GCNNNNNNNGC	2 cut(s)	298, 806
HpyF3I	CTNAG	7 cut(s)	112, 120, 264, 312, 411, 476, 951
Hsp92II	CATG	5 cut(s)	93, 160, 624, 787, 852
HspAI	GCGC	1 cut(s)	857
Kpn2I	TCCGGA	1 cut(s)	898
Ksp22I	TGATCA	1 cut(s)	690
Kzo9I	GATC	4 cut(s)	428, 457, 553, 690
LmnI	GCTCC	1 cut(s)	751
Lsp1109I	GCAGC	2 cut(s)	386, 787
LweI	GCATC	2 cut(s)	507, 1010
MaeI	CTAG	3 cut(s)	482, 578, 626
MaeIII	GTNAC	2 cut(s)	159, 630
MalI	GATC	4 cut(s)	430, 459, 555, 692
MboI	GATC	4 cut(s)	428, 457, 553, 690
MboII	GAAGA	6 cut(s)	16, 281, 437, 596, 832, 970
MflI	RGATCY	2 cut(s)	457, 553
MhlI	GDGCHC	2 cut(s)	665, 933
MluCI	AATT	4 cut(s)	7, 182, 491, 568
MlyI	GAGTC	3 cut(s)	638, 781, 962
MmeI	TCCRAC	2 cut(s)	57, 653
MroI	TCCGGA	1 cut(s)	898
MroXI	GAANNNNTTC	2 cut(s)	8, 302
MseI	TTAA	5 cut(s)	21, 126, 246, 434, 758
MspI	CCGG	4 cut(s)	899, 971, 998, 1045
MspR9I	CCNGG	1 cut(s)	971
Mva1269I	GAATGC	1 cut(s)	829
MvnI	CGCG	1 cut(s)	1018
MwoI	GCNNNNNNNGC	2 cut(s)	298, 806
NciI	CCSGG	1 cut(s)	971
NdeII	GATC	4 cut(s)	428, 457, 553, 690
NlaIII	CATG	5 cut(s)	93, 160, 624, 787, 852
NlaIV	GGNNCC	3 cut(s)	459, 681, 969
NmeAIII	GCCGAG	1 cut(s)	45
NmuCI	GTSAC	2 cut(s)	159, 630
NruI	TCGCGA	1 cut(s)	1018
NspI	RCATGY	2 cut(s)	160, 852
PciI	ACATGT	1 cut(s)	156
PctI	GAATGC	1 cut(s)	829
PdmI	GAANNNNTTC	2 cut(s)	8, 302
PfeI	GAWTC	1 cut(s)	654
PkrI	GCNGC	3 cut(s)	376, 802, 909
PleI	GAGTC	3 cut(s)	637, 781, 961
PpsI	GAGTC	3 cut(s)	637, 781, 961
PpuMI	RGGWCCY	1 cut(s)	967
PscI	ACATGT	1 cut(s)	156
PsiI	TTATAA	1 cut(s)	225
Psp5II	RGGWCCY	1 cut(s)	967
PspFI	CCCAGC	2 cut(s)	422, 853
PspN4I	GGNNCC	3 cut(s)	459, 681, 969
PspPI	GGNCC	2 cut(s)	93, 967
PspPPI	RGGWCCY	1 cut(s)	967
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	2 cut(s)	457, 553
RruI	TCGCGA	1 cut(s)	1018
RsaI	GTAC	2 cut(s)	101, 170
RsaNI	GTAC	2 cut(s)	100, 169
SaqAI	TTAA	5 cut(s)	21, 126, 246, 434, 758
SatI	GCNGC	3 cut(s)	375, 801, 908
Sau3AI	GATC	4 cut(s)	428, 457, 553, 690
Sau96I	GGNCC	2 cut(s)	93, 967
ScaI	AGTACT	1 cut(s)	101
SchI	GAGTC	3 cut(s)	638, 781, 962
ScrFI	CCNGG	1 cut(s)	971
SduI	GDGCHC	2 cut(s)	665, 933
SetI	ASST	8 cut(s)	48, 252, 318, 379, 391, 424, 756, 946
SfaNI	GCATC	2 cut(s)	507, 1010
SinI	GGWCC	2 cut(s)	93, 967
SmlI	CTYRAG	3 cut(s)	293, 557, 959
SmoI	CTYRAG	3 cut(s)	293, 557, 959
Sse9I	AATT	4 cut(s)	7, 182, 491, 568
SsiI	CCGC	2 cut(s)	473, 907
SspMI	CTAG	3 cut(s)	482, 578, 626
StyD4I	CCNGG	1 cut(s)	969
TaaI	ACNGT	5 cut(s)	80, 165, 636, 671, 731
TaqI	TCGA	1 cut(s)	501
TasI	AATT	4 cut(s)	7, 182, 491, 568
TatI	WGTACW	2 cut(s)	99, 168
TauI	GCSGC	1 cut(s)	910
TfiI	GAWTC	1 cut(s)	654
Tru1I	TTAA	5 cut(s)	21, 126, 246, 434, 758
Tru9I	TTAA	5 cut(s)	21, 126, 246, 434, 758
TscAI	CASTG	6 cut(s)	20, 90, 399, 415, 641, 649
TseFI	GTSAC	2 cut(s)	159, 630
TseI	GCWGC	2 cut(s)	374, 800
Tsp45I	GTSAC	2 cut(s)	159, 630
TspDTI	ATGAA	5 cut(s)	17, 288, 437, 536, 609
TspRI	CASTG	6 cut(s)	20, 90, 399, 415, 641, 649
VneI	GTGCAC	1 cut(s)	929
VpaK11BI	GGWCC	2 cut(s)	93, 967
XagI	CCTNNNNNAGG	1 cut(s)	962
XapI	RAATTY	3 cut(s)	7, 182, 568
XceI	RCATGY	2 cut(s)	160, 852
XmiI	GTMKAC	1 cut(s)	541
XmnI	GAANNNNTTC	2 cut(s)	8, 302
XspI	CTAG	3 cut(s)	482, 578, 626
ZrmI	AGTACT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.