Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007507

Physical Location & Seq

Genomic Coordinates Reverse (-)

11951999 .. 11955843

Gene Structure 3845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17317

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGAAGAATTTTCAGTGGTATAAGCAAATTTCCAACAATGGCAAACCAGAGGGGAGGCTGTCACTTGGAGAATACAATAGGGCGGTTTCGTGGTCCAAGTACTTGGTATCTCCAGGGGCTGAGATTAAAGGCGAAGCAGAGGAAGATTGGGGTGCTGACATGTCCCAATTGTACATTGGCTGCAAATTTGCTTCAGGGAGACATAGCAGGATTTACAGAGGGGTTTATAAGCAGAAGGATGTAGCGATTAAGCTTATAAGCCAGCCGGAGGAGGATGCCGACTTGGCTGTTTTGCTCGAAAACCAGTTCACTTCAGAAGTGGCTTTGCTGTTTCGATTGCAACACCCGAATATCCTCACTTTTGTTGGAGCTTGTAAGAAGCCTCCTGTGTTCTGCATAATCACCGAGTATTTATCCGGGGGATCGCTGAGAAAGTATCTCCATCAGCAGGAGCCACACTCCCTTCCACTCAGCCTAGTTCTCAAATTAGCCCTTGATATTGCACGCGGAATGCAATATCTTCATTCTCAAGGTATACTTCATAGGGATCTCAAGTCGGAAAATCTATTGCTAGGAGAAGATATGTCTGTGAAAGTTGCGGATTTTGGTATCTCGTGCTTGGAATCACAGTGCGGCAGTGCTAAGGGGTTCACCGGGACTTACCGTTGGATGGCCCCTGAAATGATAAAAGAGAAACACCATACGAAAAAAGTTGATGTTTACAGTTTTGGCATAGTTCTTTGGGAACTTTTAACAGCACTGACACCATTTGACAACATGACTCCGGAACAGGCTGCATTTGCAGTGTCACAGAAGAATGCAAGACCTCCGTTGCCGCCCACATGCCCAACGGCATTCAGTCATCTCATCAACCGATGTTGGTCGAGTCGTCCGAAGAAGCGACCGCACTTCGATGAGATAGTTTACATTTTGGAAGGTCATGCAGAGTCCCTTGAGCAGGACCCAGATTTTTTCTCATCCTACAAGTCTCCCCAAGATCACACCCTTTCCCGATGCTTTCCAAAATGGATCGGTCGCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

347

Amino Acids

39.41

Weight (kDa)

8.31

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	61 - 309	2e-64	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	65 - 308	2.1e-54	Protein kinase domain
Pkinase_fungal	PF17667	166 - 247	7.9e-07	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007507)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05240 FvH4_5g05240 FvH4_5g05240
malus_domestica	MD06G1175200.v1.1 MD14G1182000.v1.1
prunus_persica	Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1
pyrus_communis	pycom06g15600 pycom14g15100
rosa_chinensis	RchiOBHm_Chr7g0193661
rosa_laevigata	RLG00000004253
rosa_multiflora	Rmu_sc0001436.1_g000007
rosa_roxburghii	Rroxscaffold_3G00261930
rosa_rugosa	Rorug07G0011200 Rorug07G0011300 Rorug07G0011300
rosa_samantha	Rh7AG137900 Rh7BG138100 Rh7CG141800 Rh7DG139200
rosa_wichuraiana	Rw7G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	228, 257
AccI	GTMKAC	1 cut(s)	535
AccII	CGCG	1 cut(s)	507
AccIII	TCCGGA	1 cut(s)	784
AciI	CCGC	6 cut(s)	83, 507, 599, 633, 836, 905
AclWI	GGATC	3 cut(s)	430, 555, 1037
AcsI	RAATTY	3 cut(s)	7, 27, 185
AcuI	CTGAAG	2 cut(s)	177, 297
AfaI	GTAC	2 cut(s)	101, 173
AfiI	CCNNNNNNNGG	4 cut(s)	268, 448, 670, 958
AflIII	ACRYGT	1 cut(s)	159
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	2 cut(s)	253, 371
AluI	AGCT	2 cut(s)	253, 371
Alw26I	GTCTC	2 cut(s)	193, 993
AlwI	GGATC	3 cut(s)	430, 555, 1037
AlwNI	CAGNNNCTG	1 cut(s)	119
Aor13HI	TCCGGA	1 cut(s)	784
AoxI	GGCC	1 cut(s)	672
ApeKI	GCWGC	2 cut(s)	180, 794
ApoI	RAATTY	3 cut(s)	7, 27, 185
AspS9I	GGNCC	3 cut(s)	93, 673, 961
AsuC2I	CCSGG	2 cut(s)	418, 655
AsuHPI	GGTGA	2 cut(s)	394, 643
AvaII	GGWCC	2 cut(s)	93, 961
BauI	CACGAG	1 cut(s)	613
BbvI	GCAGC	2 cut(s)	167, 781
BccI	CCATC	2 cut(s)	450, 664
BceAI	ACGGC	1 cut(s)	867
BciT130I	CCWGG	1 cut(s)	114
BcnI	CCSGG	2 cut(s)	418, 655
BcoDI	GTCTC	2 cut(s)	193, 993
BfaI	CTAG	2 cut(s)	476, 572
BglI	GCCNNNNNGGC	1 cut(s)	284
BisI	GCNGC	4 cut(s)	181, 634, 795, 836
BlsI	GCNGC	4 cut(s)	182, 635, 796, 837
BmcAI	AGTACT	1 cut(s)	101
Bme1390I	CCNGG	3 cut(s)	114, 418, 655
Bme18I	GGWCC	2 cut(s)	93, 961
BmgT120I	GGNCC	3 cut(s)	93, 673, 961
BmiI	GGNNCC	3 cut(s)	453, 675, 963
BmrFI	CCNGG	3 cut(s)	114, 418, 655
BmsI	GCATC	2 cut(s)	265, 1004
BplI	GAGNNNNNCTC	2 cut(s)	443, 475
BpmI	CTGGAG	1 cut(s)	96
Bpu10I	CCTNAGC	1 cut(s)	642
BpuEI	CTTGAG	3 cut(s)	513, 536, 974
BpuMI	CCSGG	2 cut(s)	418, 655
BsaJI	CCNNGG	2 cut(s)	113, 417
BsaWI	WCCGGW	1 cut(s)	784
Bsc4I	CCNNNNNNNGG	4 cut(s)	268, 448, 670, 958
Bse1I	ACTGG	1 cut(s)	304
BseAI	TCCGGA	1 cut(s)	784
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	113, 417
BseGI	GGATG	4 cut(s)	244, 280, 675, 977
BseLI	CCNNNNNNNGG	4 cut(s)	268, 448, 670, 958
BseMII	CTCAG	3 cut(s)	111, 419, 484
BseNI	ACTGG	1 cut(s)	304
BseRI	GAGGAG	1 cut(s)	284
BseXI	GCAGC	2 cut(s)	167, 781
Bsh1236I	CGCG	1 cut(s)	507
Bsh1285I	CGRYCG	2 cut(s)	905, 1036
BshFI	GGCC	1 cut(s)	674
BsiEI	CGRYCG	2 cut(s)	905, 1036
BsiSI	CCGG	4 cut(s)	266, 417, 654, 785
BslFI	GGGAC	3 cut(s)	148, 670, 934
BslI	CCNNNNNNNGG	4 cut(s)	268, 448, 670, 958
BsmAI	GTCTC	2 cut(s)	193, 993
BsmFI	GGGAC	3 cut(s)	148, 670, 934
BsmI	GAATGC	3 cut(s)	516, 823, 854
BsnI	GGCC	1 cut(s)	674
Bsp13I	TCCGGA	1 cut(s)	784
Bsp1407I	TGTACA	1 cut(s)	171
Bsp143I	GATC	4 cut(s)	422, 547, 997, 1029
BspACI	CCGC	6 cut(s)	83, 507, 599, 633, 836, 905
BspANI	GGCC	1 cut(s)	674
BspCNI	CTCAG	3 cut(s)	112, 420, 483
BspEI	TCCGGA	1 cut(s)	784
BspFNI	CGCG	1 cut(s)	507
BspLI	GGNNCC	3 cut(s)	453, 675, 963
BspPI	GGATC	3 cut(s)	430, 555, 1037
BsrGI	TGTACA	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	304
BssECI	CCNNGG	2 cut(s)	113, 417
BssMI	GATC	4 cut(s)	422, 547, 997, 1029
BssNAI	GTATAC	1 cut(s)	536
BssSI	CACGAG	1 cut(s)	613
Bst1107I	GTATAC	1 cut(s)	536
Bst2BI	CACGAG	1 cut(s)	613
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	3 cut(s)	630, 665, 725
BstAUI	TGTACA	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	263, 505
BstDEI	CTNAG	4 cut(s)	120, 428, 470, 642
BstENI	CCTNNNNNAGG	1 cut(s)	956
BstF5I	GGATG	4 cut(s)	244, 280, 675, 977
BstFNI	CGCG	1 cut(s)	507
BstKTI	GATC	4 cut(s)	425, 550, 1000, 1032
BstMAI	GTCTC	2 cut(s)	193, 993
BstMBI	GATC	4 cut(s)	422, 547, 997, 1029
BstMCI	CGRYCG	2 cut(s)	905, 1036
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 800
BstNI	CCWGG	1 cut(s)	114
BstNSI	RCATGY	2 cut(s)	163, 846
BstSCI	CCNGG	3 cut(s)	112, 416, 653
BstUI	CGCG	1 cut(s)	507
BstV1I	GCAGC	2 cut(s)	167, 781
BstX2I	RGATCY	1 cut(s)	547
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	547
BstZ17I	GTATAC	1 cut(s)	536
BsuRI	GGCC	1 cut(s)	674
BtsCI	GGATG	4 cut(s)	244, 280, 675, 977
BtsI	GCAGTG	2 cut(s)	643, 810
BtsIMutI	CAGTG	6 cut(s)	20, 635, 643, 758, 810, 1039
Cac8I	GCNNGC	2 cut(s)	263, 505
CaiI	CAGNNNCTG	1 cut(s)	119
Cfr13I	GGNCC	3 cut(s)	93, 673, 961
Csp6I	GTAC	2 cut(s)	100, 172
CviAII	CATG	4 cut(s)	160, 778, 843, 941
CviQI	GTAC	2 cut(s)	100, 172
DdeI	CTNAG	4 cut(s)	120, 428, 470, 642
DpnI	GATC	4 cut(s)	424, 549, 999, 1031
DpnII	GATC	4 cut(s)	422, 547, 997, 1029
Eco47I	GGWCC	2 cut(s)	93, 961
Eco57I	CTGAAG	2 cut(s)	177, 297
EcoNI	CCTNNNNNAGG	1 cut(s)	956
EcoO109I	RGGNCCY	1 cut(s)	961
EcoRII	CCWGG	1 cut(s)	112
FaeI	CATG	4 cut(s)	163, 781, 846, 944
FalI	AAGNNNNNCTT	2 cut(s)	522, 554
FaqI	GGGAC	3 cut(s)	148, 670, 934
FatI	CATG	4 cut(s)	159, 777, 842, 940
FblI	GTMKAC	1 cut(s)	535
Fnu4HI	GCNGC	4 cut(s)	181, 634, 795, 836
FokI	GGATG	4 cut(s)	251, 287, 682, 964
Fsp4HI	GCNGC	4 cut(s)	181, 634, 795, 836
FspBI	CTAG	2 cut(s)	476, 572
GluI	GCNGC	4 cut(s)	181, 634, 795, 836
GsuI	CTGGAG	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	674
HapII	CCGG	4 cut(s)	266, 417, 654, 785
Hin1II	CATG	4 cut(s)	163, 781, 846, 944
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	4 cut(s)	623, 781, 886, 947
HpaII	CCGG	4 cut(s)	266, 417, 654, 785
HphI	GGTGA	2 cut(s)	394, 643
Hpy166II	GTNNAC	5 cut(s)	309, 536, 651, 721, 925
Hpy188I	TCNGA	3 cut(s)	316, 559, 894
Hpy188III	TCNNGA	2 cut(s)	785, 1011
Hpy8I	GTNNAC	5 cut(s)	309, 536, 651, 721, 925
HpyAV	CCTTC	3 cut(s)	229, 473, 929
HpyCH4III	ACNGT	3 cut(s)	630, 665, 725
HpyCH4V	TGCA	9 cut(s)	183, 340, 396, 503, 514, 797, 803, 821, 944
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 800
HpyF3I	CTNAG	4 cut(s)	120, 428, 470, 642
Hsp92II	CATG	4 cut(s)	163, 781, 846, 944
Kpn2I	TCCGGA	1 cut(s)	784
Kzo9I	GATC	4 cut(s)	422, 547, 997, 1029
LmnI	GCTCC	2 cut(s)	368, 451
Lsp1109I	GCAGC	2 cut(s)	167, 781
LweI	GCATC	2 cut(s)	265, 1004
MaeI	CTAG	2 cut(s)	476, 572
MaeIII	GTNAC	2 cut(s)	60, 807
MalI	GATC	4 cut(s)	424, 549, 999, 1031
MboI	GATC	4 cut(s)	422, 547, 997, 1029
MboII	GAAGA	6 cut(s)	16, 155, 512, 590, 826, 907
MfeI	CAATTG	1 cut(s)	167
MflI	RGATCY	1 cut(s)	547
MluCI	AATT	5 cut(s)	7, 27, 167, 185, 485
MlyI	GAGTC	3 cut(s)	775, 895, 956
MmeI	TCCRAC	4 cut(s)	57, 346, 537, 647
MnlI	CCTC	9 cut(s)	43, 48, 133, 212, 262, 265, 365, 393, 837
MroI	TCCGGA	1 cut(s)	784
MseI	TTAA	3 cut(s)	126, 249, 752
MslI	CAYNNNNRTG	1 cut(s)	912
MspI	CCGG	4 cut(s)	266, 417, 654, 785
MspR9I	CCNGG	3 cut(s)	114, 418, 655
MunI	CAATTG	1 cut(s)	167
Mva1269I	GAATGC	3 cut(s)	516, 823, 854
MvaI	CCWGG	1 cut(s)	114
MvnI	CGCG	1 cut(s)	507
MwoI	GCNNNNNNNGC	2 cut(s)	284, 800
NciI	CCSGG	2 cut(s)	418, 655
NdeII	GATC	4 cut(s)	422, 547, 997, 1029
NlaIII	CATG	4 cut(s)	163, 781, 846, 944
NlaIV	GGNNCC	3 cut(s)	453, 675, 963
NmuCI	GTSAC	2 cut(s)	60, 807
NspI	RCATGY	2 cut(s)	163, 846
PciI	ACATGT	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	1 cut(s)	890
PctI	GAATGC	3 cut(s)	516, 823, 854
PfeI	GAWTC	1 cut(s)	623
PkrI	GCNGC	4 cut(s)	182, 635, 796, 837
PleI	GAGTC	3 cut(s)	775, 894, 955
PpsI	GAGTC	3 cut(s)	775, 894, 955
PpuMI	RGGWCCY	1 cut(s)	961
PscI	ACATGT	1 cut(s)	159
PsiI	TTATAA	2 cut(s)	228, 257
Psp5II	RGGWCCY	1 cut(s)	961
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	3 cut(s)	453, 675, 963
PspPI	GGNCC	3 cut(s)	93, 673, 961
PspPPI	RGGWCCY	1 cut(s)	961
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	547
RsaI	GTAC	2 cut(s)	101, 173
RsaNI	GTAC	2 cut(s)	100, 172
RseI	CAYNNNNRTG	1 cut(s)	912
SaqAI	TTAA	3 cut(s)	126, 249, 752
SatI	GCNGC	4 cut(s)	181, 634, 795, 836
Sau3AI	GATC	4 cut(s)	422, 547, 997, 1029
Sau96I	GGNCC	3 cut(s)	93, 673, 961
ScaI	AGTACT	1 cut(s)	101
SchI	GAGTC	3 cut(s)	775, 895, 956
ScrFI	CCNGG	3 cut(s)	114, 418, 655
SetI	ASST	5 cut(s)	255, 373, 535, 829, 940
SfaNI	GCATC	2 cut(s)	265, 1004
SinI	GGWCC	2 cut(s)	93, 961
SmiMI	CAYNNNNRTG	1 cut(s)	912
SmlI	CTYRAG	3 cut(s)	528, 551, 953
SmoI	CTYRAG	3 cut(s)	528, 551, 953
Sse9I	AATT	5 cut(s)	7, 27, 167, 185, 485
SsiI	CCGC	6 cut(s)	83, 507, 599, 633, 836, 905
SspMI	CTAG	2 cut(s)	476, 572
StyD4I	CCNGG	3 cut(s)	112, 416, 653
TaaI	ACNGT	3 cut(s)	630, 665, 725
TaqI	TCGA	4 cut(s)	297, 334, 884, 912
TaqII	GACCGA	1 cut(s)	1022
TasI	AATT	5 cut(s)	7, 27, 167, 185, 485
TatI	WGTACW	2 cut(s)	99, 171
TauI	GCSGC	2 cut(s)	636, 838
TfiI	GAWTC	1 cut(s)	623
Tru1I	TTAA	3 cut(s)	126, 249, 752
Tru9I	TTAA	3 cut(s)	126, 249, 752
TscAI	CASTG	5 cut(s)	20, 635, 643, 765, 810
TseFI	GTSAC	2 cut(s)	60, 807
TseI	GCWGC	2 cut(s)	180, 794
Tsp45I	GTSAC	2 cut(s)	60, 807
TspDTI	ATGAA	3 cut(s)	17, 512, 530
TspGWI	ACGGA	1 cut(s)	819
TspRI	CASTG	5 cut(s)	20, 635, 643, 765, 810
VpaK11BI	GGWCC	2 cut(s)	93, 961
XagI	CCTNNNNNAGG	1 cut(s)	956
XapI	RAATTY	3 cut(s)	7, 27, 185
XceI	RCATGY	2 cut(s)	163, 846
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	535
XspI	CTAG	2 cut(s)	476, 572
ZrmI	AGTACT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.