Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007507

Physical Location & Seq

Genomic Coordinates Reverse (-)

10285782 .. 10289939

Gene Structure 4158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG138100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAAGAATTTTCAGTGGTATAAGCAGATTTCCAACAATGGCAAACCAGAGAGGAGGCTGTCACTTGGAGAATACAACAGGGCGGTTTCGTGGTCCAAGTACTTGGTATCTCCAGGGGCTGAGATTAAAGGCGAAGCAGAGGAAGATTGGGGTGCTGACATGTCCCAATTGTACATTGGCTGCAAATTTGCTTCAGGGAGACATAGCAGGATTTACAGAGGGGTTTATAAGCAGAAGGATGTAGCGATTAAGCTTATAAGCCAGCCGGAGGAGGATGCCGACTTGGCTGTTTTGCTCGAAAACCAGTTCACTTCAGAAGTGGCTTTGCTGTTTCGATTGCAACACCCGAATATCCTCACTTTTGTTGGAGCTTGTAAGAAGCCTCCTGTGTTCTGCATAATCACCGAGTATTTATCCGGGGGATCGCTGAGAAAGTATCTCCATCAGCAGGAGCCACACTCCCTTCCACTCAGCCTAGTTCTCAAATTAGCCCTTGATATTGCACGCGGAATGCAATATCTTCATTCTCAAGGTATACTTCATAGGGATCTCAAGTCGGAAAATCTATTGCTAGGAGAAGATATGTCTGTGAAAGTTGCGGATTTTGGTATCTCGTGCTTGGAATCACAGTGCGGCAGTGCTAAGGGGTTCACCGGGACTTACCGTTGGATGGCGCCTGAAATGATAAAAGAGAAACACCATACAAAAAAAGTTGATGTTTACAGTTTTGGCATAGTTCTTTGGGAACTTTTAACAGCACTGACACCATTTGACAACATGACTCCGGAACAGGCTGCATTTGCAGTGTCACAGAAGATCATGTGGGGACCTGCTGCTATGGTCATCATCCTTATCTTTGCAGGAAATGATATTTCCAAAATCAAAGAATTATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

298

Amino Acids

33.56

Weight (kDa)

8.16

Isoelectric Point (pI)

36.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	61 - 271	1.9e-52	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	65 - 266	7.5e-50	Protein kinase domain
Pkinase_fungal	PF17667	166 - 247	5.9e-07	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007507)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05240 FvH4_5g05240 FvH4_5g05240
malus_domestica	MD06G1175200.v1.1 MD14G1182000.v1.1
prunus_persica	Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1
pyrus_communis	pycom06g15600 pycom14g15100
rosa_chinensis	RchiOBHm_Chr7g0193661
rosa_laevigata	RLG00000004253
rosa_multiflora	Rmu_sc0001436.1_g000007
rosa_roxburghii	Rroxscaffold_3G00261930
rosa_rugosa	Rorug07G0011200 Rorug07G0011300 Rorug07G0011300
rosa_samantha	Rh7AG137900 Rh7BG138100 Rh7CG141800 Rh7DG139200
rosa_wichuraiana	Rw7G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	228, 257
Acc36I	ACCTGC	1 cut(s)	838
AccB1I	GGYRCC	1 cut(s)	673
AccI	GTMKAC	1 cut(s)	535
AccII	CGCG	1 cut(s)	507
AccIII	TCCGGA	1 cut(s)	784
AciI	CCGC	4 cut(s)	83, 507, 599, 633
AclWI	GGATC	2 cut(s)	430, 555
AcsI	RAATTY	2 cut(s)	7, 185
AcuI	CTGAAG	2 cut(s)	177, 297
AcyI	GRCGYC	1 cut(s)	674
AfaI	GTAC	2 cut(s)	101, 173
AfiI	CCNNNNNNNGG	3 cut(s)	268, 448, 670
AflIII	ACRYGT	1 cut(s)	159
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	2 cut(s)	253, 371
AluI	AGCT	2 cut(s)	253, 371
Alw26I	GTCTC	1 cut(s)	193
AlwI	GGATC	2 cut(s)	430, 555
AlwNI	CAGNNNCTG	1 cut(s)	119
Aor13HI	TCCGGA	1 cut(s)	784
ApeKI	GCWGC	3 cut(s)	180, 794, 833
ApoI	RAATTY	2 cut(s)	7, 185
AspLEI	GCGC	1 cut(s)	676
AspS9I	GGNCC	2 cut(s)	93, 827
AsuC2I	CCSGG	2 cut(s)	418, 655
AsuHPI	GGTGA	2 cut(s)	394, 643
AvaII	GGWCC	2 cut(s)	93, 827
BanI	GGYRCC	1 cut(s)	673
BauI	CACGAG	1 cut(s)	613
BbvI	GCAGC	3 cut(s)	167, 781, 820
BccI	CCATC	2 cut(s)	450, 664
BciT130I	CCWGG	1 cut(s)	114
BcnI	CCSGG	2 cut(s)	418, 655
BcoDI	GTCTC	1 cut(s)	193
BfaI	CTAG	2 cut(s)	476, 572
BfoI	RGCGCY	1 cut(s)	677
BfuAI	ACCTGC	1 cut(s)	838
BglI	GCCNNNNNGGC	1 cut(s)	284
BisI	GCNGC	4 cut(s)	181, 634, 795, 834
BlsI	GCNGC	4 cut(s)	182, 635, 796, 835
BmcAI	AGTACT	1 cut(s)	101
Bme1390I	CCNGG	3 cut(s)	114, 418, 655
Bme18I	GGWCC	2 cut(s)	93, 827
BmgT120I	GGNCC	2 cut(s)	93, 827
BmiI	GGNNCC	3 cut(s)	453, 675, 828
BmrFI	CCNGG	3 cut(s)	114, 418, 655
BmsI	GCATC	1 cut(s)	265
BplI	GAGNNNNNCTC	2 cut(s)	443, 475
BpmI	CTGGAG	1 cut(s)	96
Bpu10I	CCTNAGC	1 cut(s)	642
BpuEI	CTTGAG	2 cut(s)	513, 536
BpuMI	CCSGG	2 cut(s)	418, 655
BsaHI	GRCGYC	1 cut(s)	674
BsaJI	CCNNGG	2 cut(s)	113, 417
BsaWI	WCCGGW	1 cut(s)	784
Bsc4I	CCNNNNNNNGG	3 cut(s)	268, 448, 670
Bse1I	ACTGG	1 cut(s)	304
BseAI	TCCGGA	1 cut(s)	784
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	113, 417
BseGI	GGATG	4 cut(s)	244, 280, 675, 846
BseLI	CCNNNNNNNGG	3 cut(s)	268, 448, 670
BseMII	CTCAG	3 cut(s)	111, 419, 484
BseNI	ACTGG	1 cut(s)	304
BseRI	GAGGAG	2 cut(s)	67, 284
BseXI	GCAGC	3 cut(s)	167, 781, 820
Bsh1236I	CGCG	1 cut(s)	507
BshNI	GGYRCC	1 cut(s)	673
BsiSI	CCGG	4 cut(s)	266, 417, 654, 785
BslFI	GGGAC	3 cut(s)	148, 670, 840
BslI	CCNNNNNNNGG	3 cut(s)	268, 448, 670
BsmAI	GTCTC	1 cut(s)	193
BsmFI	GGGAC	3 cut(s)	148, 670, 840
BsmI	GAATGC	1 cut(s)	516
Bsp13I	TCCGGA	1 cut(s)	784
Bsp1407I	TGTACA	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	422, 547, 816
BspACI	CCGC	4 cut(s)	83, 507, 599, 633
BspCNI	CTCAG	3 cut(s)	112, 420, 483
BspEI	TCCGGA	1 cut(s)	784
BspFNI	CGCG	1 cut(s)	507
BspLI	GGNNCC	3 cut(s)	453, 675, 828
BspMI	ACCTGC	1 cut(s)	838
BspPI	GGATC	2 cut(s)	430, 555
BspT107I	GGYRCC	1 cut(s)	673
BsrGI	TGTACA	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	304
BssECI	CCNNGG	2 cut(s)	113, 417
BssMI	GATC	3 cut(s)	422, 547, 816
BssNAI	GTATAC	1 cut(s)	536
BssNI	GRCGYC	1 cut(s)	674
BssSI	CACGAG	1 cut(s)	613
Bst1107I	GTATAC	1 cut(s)	536
Bst2BI	CACGAG	1 cut(s)	613
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	3 cut(s)	630, 665, 725
BstACI	GRCGYC	1 cut(s)	674
BstAUI	TGTACA	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	263, 505
BstDEI	CTNAG	4 cut(s)	120, 428, 470, 642
BstF5I	GGATG	4 cut(s)	244, 280, 675, 846
BstFNI	CGCG	1 cut(s)	507
BstH2I	RGCGCY	1 cut(s)	677
BstHHI	GCGC	1 cut(s)	676
BstKTI	GATC	3 cut(s)	425, 550, 819
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	3 cut(s)	422, 547, 816
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 800
BstNI	CCWGG	1 cut(s)	114
BstNSI	RCATGY	1 cut(s)	163
BstSCI	CCNGG	3 cut(s)	112, 416, 653
BstUI	CGCG	1 cut(s)	507
BstV1I	GCAGC	3 cut(s)	167, 781, 820
BstX2I	RGATCY	1 cut(s)	547
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	547
BstZ17I	GTATAC	1 cut(s)	536
BtsCI	GGATG	4 cut(s)	244, 280, 675, 846
BtsI	GCAGTG	2 cut(s)	643, 810
BtsIMutI	CAGTG	5 cut(s)	20, 635, 643, 758, 810
BveI	ACCTGC	1 cut(s)	838
Cac8I	GCNNGC	2 cut(s)	263, 505
CaiI	CAGNNNCTG	1 cut(s)	119
CfoI	GCGC	1 cut(s)	676
Cfr13I	GGNCC	2 cut(s)	93, 827
Csp6I	GTAC	2 cut(s)	100, 172
CviAII	CATG	3 cut(s)	160, 778, 820
CviQI	GTAC	2 cut(s)	100, 172
DdeI	CTNAG	4 cut(s)	120, 428, 470, 642
DinI	GGCGCC	1 cut(s)	675
DpnI	GATC	3 cut(s)	424, 549, 818
DpnII	GATC	3 cut(s)	422, 547, 816
Eco47I	GGWCC	2 cut(s)	93, 827
Eco57I	CTGAAG	2 cut(s)	177, 297
EcoO109I	RGGNCCY	1 cut(s)	827
EcoRII	CCWGG	1 cut(s)	112
EgeI	GGCGCC	1 cut(s)	675
EheI	GGCGCC	1 cut(s)	675
FaeI	CATG	3 cut(s)	163, 781, 823
FalI	AAGNNNNNCTT	2 cut(s)	522, 554
FaqI	GGGAC	3 cut(s)	148, 670, 840
FatI	CATG	3 cut(s)	159, 777, 819
FblI	GTMKAC	1 cut(s)	535
Fnu4HI	GCNGC	4 cut(s)	181, 634, 795, 834
FokI	GGATG	4 cut(s)	251, 287, 682, 833
Fsp4HI	GCNGC	4 cut(s)	181, 634, 795, 834
FspBI	CTAG	2 cut(s)	476, 572
GlaI	GCGC	1 cut(s)	675
GluI	GCNGC	4 cut(s)	181, 634, 795, 834
GsuI	CTGGAG	1 cut(s)	96
HaeII	RGCGCY	1 cut(s)	677
HapII	CCGG	4 cut(s)	266, 417, 654, 785
HhaI	GCGC	1 cut(s)	676
Hin1I	GRCGYC	1 cut(s)	674
Hin1II	CATG	3 cut(s)	163, 781, 823
Hin6I	GCGC	1 cut(s)	674
HinP1I	GCGC	1 cut(s)	674
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	2 cut(s)	623, 781
HpaII	CCGG	4 cut(s)	266, 417, 654, 785
HphI	GGTGA	2 cut(s)	394, 643
Hpy166II	GTNNAC	4 cut(s)	309, 536, 651, 721
Hpy188I	TCNGA	2 cut(s)	316, 559
Hpy188III	TCNNGA	1 cut(s)	785
Hpy8I	GTNNAC	4 cut(s)	309, 536, 651, 721
HpyAV	CCTTC	2 cut(s)	229, 473
HpyCH4III	ACNGT	3 cut(s)	630, 665, 725
HpyCH4V	TGCA	8 cut(s)	183, 340, 396, 503, 514, 797, 803, 860
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 800
HpyF3I	CTNAG	4 cut(s)	120, 428, 470, 642
Hsp92I	GRCGYC	1 cut(s)	674
Hsp92II	CATG	3 cut(s)	163, 781, 823
HspAI	GCGC	1 cut(s)	674
KasI	GGCGCC	1 cut(s)	673
Kpn2I	TCCGGA	1 cut(s)	784
Kzo9I	GATC	3 cut(s)	422, 547, 816
LmnI	GCTCC	2 cut(s)	368, 451
Lsp1109I	GCAGC	3 cut(s)	167, 781, 820
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	2 cut(s)	476, 572
MaeIII	GTNAC	2 cut(s)	60, 807
MalI	GATC	3 cut(s)	424, 549, 818
MboI	GATC	3 cut(s)	422, 547, 816
MboII	GAAGA	5 cut(s)	16, 155, 512, 590, 826
MfeI	CAATTG	1 cut(s)	167
MflI	RGATCY	1 cut(s)	547
MluCI	AATT	5 cut(s)	7, 167, 185, 485, 887
Mly113I	GGCGCC	1 cut(s)	674
MlyI	GAGTC	1 cut(s)	775
MmeI	TCCRAC	4 cut(s)	57, 346, 537, 647
MnlI	CCTC	8 cut(s)	45, 48, 133, 212, 262, 265, 365, 393
MroI	TCCGGA	1 cut(s)	784
MseI	TTAA	4 cut(s)	126, 249, 752, 895
MspI	CCGG	4 cut(s)	266, 417, 654, 785
MspR9I	CCNGG	3 cut(s)	114, 418, 655
MunI	CAATTG	1 cut(s)	167
Mva1269I	GAATGC	1 cut(s)	516
MvaI	CCWGG	1 cut(s)	114
MvnI	CGCG	1 cut(s)	507
MwoI	GCNNNNNNNGC	2 cut(s)	284, 800
NarI	GGCGCC	1 cut(s)	674
NciI	CCSGG	2 cut(s)	418, 655
NdeII	GATC	3 cut(s)	422, 547, 816
NlaIII	CATG	3 cut(s)	163, 781, 823
NlaIV	GGNNCC	3 cut(s)	453, 675, 828
NmuCI	GTSAC	2 cut(s)	60, 807
NspI	RCATGY	1 cut(s)	163
PciI	ACATGT	1 cut(s)	159
PctI	GAATGC	1 cut(s)	516
PfeI	GAWTC	1 cut(s)	623
PkrI	GCNGC	4 cut(s)	182, 635, 796, 835
PleI	GAGTC	1 cut(s)	775
PluTI	GGCGCC	1 cut(s)	677
PpsI	GAGTC	1 cut(s)	775
PpuMI	RGGWCCY	1 cut(s)	827
PscI	ACATGT	1 cut(s)	159
PsiI	TTATAA	2 cut(s)	228, 257
Psp5II	RGGWCCY	1 cut(s)	827
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	3 cut(s)	453, 675, 828
PspPI	GGNCC	2 cut(s)	93, 827
PspPPI	RGGWCCY	1 cut(s)	827
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	547
RsaI	GTAC	2 cut(s)	101, 173
RsaNI	GTAC	2 cut(s)	100, 172
SaqAI	TTAA	4 cut(s)	126, 249, 752, 895
SatI	GCNGC	4 cut(s)	181, 634, 795, 834
Sau3AI	GATC	3 cut(s)	422, 547, 816
Sau96I	GGNCC	2 cut(s)	93, 827
ScaI	AGTACT	1 cut(s)	101
SchI	GAGTC	1 cut(s)	775
ScrFI	CCNGG	3 cut(s)	114, 418, 655
SetI	ASST	4 cut(s)	255, 373, 535, 832
SfaNI	GCATC	1 cut(s)	265
SfoI	GGCGCC	1 cut(s)	675
SinI	GGWCC	2 cut(s)	93, 827
SmlI	CTYRAG	2 cut(s)	528, 551
SmoI	CTYRAG	2 cut(s)	528, 551
Sse9I	AATT	5 cut(s)	7, 167, 185, 485, 887
SsiI	CCGC	4 cut(s)	83, 507, 599, 633
SspDI	GGCGCC	1 cut(s)	673
SspMI	CTAG	2 cut(s)	476, 572
StyD4I	CCNGG	3 cut(s)	112, 416, 653
TaaI	ACNGT	3 cut(s)	630, 665, 725
TaqI	TCGA	2 cut(s)	297, 334
TasI	AATT	5 cut(s)	7, 167, 185, 485, 887
TatI	WGTACW	2 cut(s)	99, 171
TauI	GCSGC	1 cut(s)	636
TfiI	GAWTC	1 cut(s)	623
Tru1I	TTAA	4 cut(s)	126, 249, 752, 895
Tru9I	TTAA	4 cut(s)	126, 249, 752, 895
TscAI	CASTG	5 cut(s)	20, 635, 643, 765, 810
TseFI	GTSAC	2 cut(s)	60, 807
TseI	GCWGC	3 cut(s)	180, 794, 833
Tsp45I	GTSAC	2 cut(s)	60, 807
TspDTI	ATGAA	3 cut(s)	17, 512, 530
TspRI	CASTG	5 cut(s)	20, 635, 643, 765, 810
VpaK11BI	GGWCC	2 cut(s)	93, 827
XapI	RAATTY	2 cut(s)	7, 185
XceI	RCATGY	1 cut(s)	163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	535
XspI	CTAG	2 cut(s)	476, 572
ZrmI	AGTACT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.