Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007507

Physical Location & Seq

Genomic Coordinates Reverse (-)

17817681 .. 17818913

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g15100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAAGAATTTCCACTGGTTTAAGCAGATTTCCAGCAATGGCAAGCCTGAGAGGAGCCTCTCGCTGGGTGAGTACAATCGTGCAGTCTCATGGTCCAAGTACTTGGTGTCGTCAGGGGCTGAGATTAAAGGGGAAGGAGAGGAGGAGTGGAGTGCGGACATGTCACAGTTGTACATTGGGTGTAAATTTGCTTCCGGAAGGCATAGTAGGATTTACAGAGGGGTTTATAAGGAGAGAGATGTGGCGATTAAGCTGATAAGCCAGCCTGAGGAGGATGAAGGGTTGGCTGTTTTGCTTGAGAAGCAGTTCACTTCTGAGGTTGCTTTGCTTTTTCGATTGCACCATCCTAATATCATCACTTTTGTTGCAGCTTGTAAGAAACCTCCTGTGTTCTGCATTATCACCGAGTATTTAGCTGGGGGATCGTTAAGGAAGTATCTTCATCAGCAGGAGCCACATTCTGTTCCGCTTAGCCTAGTTATGAAGTTAGCCCTCAACATTGCACGCGGGATGCAATATCTCCATTCTCAAAGTATACTTCATAGGGATCTCAAGTCAGAAAATTTATTGCTAGGGGAAGATATGTCTGTAAAGGTTGCGGATTTTGGTATTTCATGCCTAGAATCACAGTGCGGCAGCGTAAAGGGATTCACGGGTACTTACCGCTGGATGGCACCCGAAATGATCGATCAAAGAGAAACACCATACAAAGAAAGTCGATGTTTACAGTTTTGGAATAGTTCTGTGGGAGCTTTTAACGGCATTGACCCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

259

Amino Acids

29.22

Weight (kDa)

7.64

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007507)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05240 FvH4_5g05240 FvH4_5g05240
malus_domestica	MD06G1175200.v1.1 MD14G1182000.v1.1
prunus_persica	Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1
pyrus_communis	pycom06g15600 pycom14g15100
rosa_chinensis	RchiOBHm_Chr7g0193661
rosa_laevigata	RLG00000004253
rosa_multiflora	Rmu_sc0001436.1_g000007
rosa_roxburghii	Rroxscaffold_3G00261930
rosa_rugosa	Rorug07G0011200 Rorug07G0011300 Rorug07G0011300
rosa_samantha	Rh7AG137900 Rh7BG138100 Rh7CG141800 Rh7DG139200
rosa_wichuraiana	Rw7G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	228
AccB1I	GGYRCC	1 cut(s)	673
AccI	GTMKAC	1 cut(s)	535
AccII	CGCG	1 cut(s)	507
AccIII	TCCGGA	1 cut(s)	194
AciI	CCGC	6 cut(s)	155, 467, 507, 599, 633, 664
AclWI	GGATC	2 cut(s)	430, 555
AcsI	RAATTY	3 cut(s)	7, 185, 562
AfaI	GTAC	4 cut(s)	74, 101, 173, 658
AfiI	CCNNNNNNNGG	3 cut(s)	64, 268, 670
AflIII	ACRYGT	1 cut(s)	159
AluBI	AGCT	4 cut(s)	253, 371, 416, 752
AluI	AGCT	4 cut(s)	253, 371, 416, 752
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	2 cut(s)	430, 555
AlwNI	CAGNNNCTG	1 cut(s)	119
Aor13HI	TCCGGA	1 cut(s)	194
ApeKI	GCWGC	2 cut(s)	368, 636
ApoI	RAATTY	3 cut(s)	7, 185, 562
Asp700I	GAANNNNTTC	2 cut(s)	8, 305
AspS9I	GGNCC	1 cut(s)	93
AsuHPI	GGTGA	2 cut(s)	80, 394
AvaII	GGWCC	1 cut(s)	93
AxyI	CCTNAGG	1 cut(s)	267
BanI	GGYRCC	1 cut(s)	673
BarI	GAAGNNNNNNTAC	2 cut(s)	175, 207
BbvI	GCAGC	2 cut(s)	380, 648
BccI	CCATC	2 cut(s)	351, 664
BceAI	ACGGC	1 cut(s)	775
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	3 cut(s)	476, 572, 620
BisI	GCNGC	3 cut(s)	369, 634, 637
BlpI	GCTNAGC	1 cut(s)	470
BlsI	GCNGC	3 cut(s)	370, 635, 638
BmcAI	AGTACT	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	3 cut(s)	56, 453, 675
BmsI	GCATC	1 cut(s)	501
Bpu1102I	GCTNAGC	1 cut(s)	470
BpuEI	CTTGAG	2 cut(s)	317, 536
Bsa29I	ATCGAT	1 cut(s)	687
BsaWI	WCCGGW	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 268, 670
Bse1I	ACTGG	1 cut(s)	20
Bse21I	CCTNAGG	1 cut(s)	267
Bse3DI	GCAATG	2 cut(s)	43, 498
BseAI	TCCGGA	1 cut(s)	194
BseCI	ATCGAT	1 cut(s)	687
BseGI	GGATG	4 cut(s)	280, 343, 516, 675
BseLI	CCNNNNNNNGG	3 cut(s)	64, 268, 670
BseMI	GCAATG	2 cut(s)	43, 498
BseMII	CTCAG	4 cut(s)	39, 111, 258, 306
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	4 cut(s)	67, 155, 158, 284
BseXI	GCAGC	2 cut(s)	380, 648
BseYI	CCCAGC	2 cut(s)	64, 416
BsgI	GTGCAG	1 cut(s)	102
Bsh1236I	CGCG	1 cut(s)	507
BshNI	GGYRCC	1 cut(s)	673
BshVI	ATCGAT	1 cut(s)	687
BsiSI	CCGG	1 cut(s)	195
BslI	CCNNNNNNNGG	3 cut(s)	64, 268, 670
BsmAI	GTCTC	1 cut(s)	91
Bsp13I	TCCGGA	1 cut(s)	194
Bsp1407I	TGTACA	1 cut(s)	171
Bsp143I	GATC	4 cut(s)	422, 547, 684, 688
Bsp1720I	GCTNAGC	1 cut(s)	470
BspACI	CCGC	6 cut(s)	155, 467, 507, 599, 633, 664
BspCNI	CTCAG	4 cut(s)	40, 112, 259, 307
BspDI	ATCGAT	1 cut(s)	687
BspEI	TCCGGA	1 cut(s)	194
BspFNI	CGCG	1 cut(s)	507
BspLI	GGNNCC	3 cut(s)	56, 453, 675
BspPI	GGATC	2 cut(s)	430, 555
BspT107I	GGYRCC	1 cut(s)	673
BsrDI	GCAATG	2 cut(s)	43, 498
BsrGI	TGTACA	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	20
BssMI	GATC	4 cut(s)	422, 547, 684, 688
BssNAI	GTATAC	1 cut(s)	536
Bst1107I	GTATAC	1 cut(s)	536
Bst4CI	ACNGT	3 cut(s)	168, 630, 729
BstAUI	TGTACA	1 cut(s)	171
BstC8I	GCNNGC	3 cut(s)	44, 263, 505
BstDEI	CTNAG	5 cut(s)	48, 120, 267, 315, 470
BstF5I	GGATG	4 cut(s)	280, 343, 516, 675
BstFNI	CGCG	1 cut(s)	507
BstKTI	GATC	4 cut(s)	425, 550, 687, 691
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	4 cut(s)	422, 547, 684, 688
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstNSI	RCATGY	1 cut(s)	163
BstUI	CGCG	1 cut(s)	507
BstV1I	GCAGC	2 cut(s)	380, 648
BstX2I	RGATCY	1 cut(s)	547
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	547
BstZ17I	GTATAC	1 cut(s)	536
Bsu15I	ATCGAT	1 cut(s)	687
Bsu36I	CCTNAGG	1 cut(s)	267
BsuTUI	ATCGAT	1 cut(s)	687
BtsCI	GGATG	4 cut(s)	280, 343, 516, 675
BtsIMutI	CAGTG	2 cut(s)	13, 635
Cac8I	GCNNGC	3 cut(s)	44, 263, 505
CaiI	CAGNNNCTG	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	93
ClaI	ATCGAT	1 cut(s)	687
Csp6I	GTAC	4 cut(s)	73, 100, 172, 657
CviAII	CATG	3 cut(s)	90, 160, 615
CviQI	GTAC	4 cut(s)	73, 100, 172, 657
DdeI	CTNAG	5 cut(s)	48, 120, 267, 315, 470
DpnI	GATC	4 cut(s)	424, 549, 686, 690
DpnII	GATC	4 cut(s)	422, 547, 684, 688
Eco47I	GGWCC	1 cut(s)	93
Eco81I	CCTNAGG	1 cut(s)	267
FaeI	CATG	3 cut(s)	93, 163, 618
FatI	CATG	3 cut(s)	89, 159, 614
FauI	CCCGC	1 cut(s)	500
FblI	GTMKAC	1 cut(s)	535
Fnu4HI	GCNGC	3 cut(s)	369, 634, 637
FokI	GGATG	4 cut(s)	287, 330, 523, 682
Fsp4HI	GCNGC	3 cut(s)	369, 634, 637
FspBI	CTAG	3 cut(s)	476, 572, 620
GluI	GCNGC	3 cut(s)	369, 634, 637
GsaI	CCCAGC	2 cut(s)	68, 420
HapII	CCGG	1 cut(s)	195
Hin1II	CATG	3 cut(s)	93, 163, 618
HinfI	GANTC	2 cut(s)	623, 648
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	2 cut(s)	80, 394
Hpy166II	GTNNAC	3 cut(s)	309, 536, 725
Hpy188I	TCNGA	2 cut(s)	316, 559
Hpy188III	TCNNGA	1 cut(s)	195
Hpy8I	GTNNAC	3 cut(s)	309, 536, 725
HpyAV	CCTTC	3 cut(s)	128, 192, 272
HpyCH4III	ACNGT	3 cut(s)	168, 630, 729
HpyCH4V	TGCA	6 cut(s)	83, 340, 368, 396, 503, 514
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
HpyF3I	CTNAG	5 cut(s)	48, 120, 267, 315, 470
Hsp92II	CATG	3 cut(s)	93, 163, 618
Kpn2I	TCCGGA	1 cut(s)	194
Kzo9I	GATC	4 cut(s)	422, 547, 684, 688
LmnI	GCTCC	3 cut(s)	54, 451, 749
Lsp1109I	GCAGC	2 cut(s)	380, 648
LweI	GCATC	1 cut(s)	501
MaeI	CTAG	3 cut(s)	476, 572, 620
MaeIII	GTNAC	1 cut(s)	162
MalI	GATC	4 cut(s)	424, 549, 686, 690
MboI	GATC	4 cut(s)	422, 547, 684, 688
MboII	GAAGA	3 cut(s)	16, 431, 590
MflI	RGATCY	1 cut(s)	547
MluCI	AATT	3 cut(s)	7, 185, 562
MroI	TCCGGA	1 cut(s)	194
MroXI	GAANNNNTTC	2 cut(s)	8, 305
MseI	TTAA	5 cut(s)	21, 126, 249, 428, 756
MspA1I	CMGCKG	1 cut(s)	666
MspI	CCGG	1 cut(s)	195
MvnI	CGCG	1 cut(s)	507
MwoI	GCNNNNNNNGC	1 cut(s)	301
NdeII	GATC	4 cut(s)	422, 547, 684, 688
NlaIII	CATG	3 cut(s)	93, 163, 618
NlaIV	GGNNCC	3 cut(s)	56, 453, 675
NmuCI	GTSAC	1 cut(s)	162
NspI	RCATGY	1 cut(s)	163
PciI	ACATGT	1 cut(s)	159
PdmI	GAANNNNTTC	2 cut(s)	8, 305
PfeI	GAWTC	2 cut(s)	623, 648
PkrI	GCNGC	3 cut(s)	370, 635, 638
PscI	ACATGT	1 cut(s)	159
PsiI	TTATAA	1 cut(s)	228
PspFI	CCCAGC	2 cut(s)	64, 416
PspN4I	GGNNCC	3 cut(s)	56, 453, 675
PspPI	GGNCC	1 cut(s)	93
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	547
RsaI	GTAC	4 cut(s)	74, 101, 173, 658
RsaNI	GTAC	4 cut(s)	73, 100, 172, 657
SaqAI	TTAA	5 cut(s)	21, 126, 249, 428, 756
SatI	GCNGC	3 cut(s)	369, 634, 637
Sau3AI	GATC	4 cut(s)	422, 547, 684, 688
Sau96I	GGNCC	1 cut(s)	93
ScaI	AGTACT	1 cut(s)	101
SetI	ASST	7 cut(s)	255, 321, 373, 385, 418, 597, 754
SfaNI	GCATC	1 cut(s)	501
SinI	GGWCC	1 cut(s)	93
SmlI	CTYRAG	2 cut(s)	296, 551
SmoI	CTYRAG	2 cut(s)	296, 551
Sse9I	AATT	3 cut(s)	7, 185, 562
SsiI	CCGC	6 cut(s)	155, 467, 507, 599, 633, 664
SspMI	CTAG	3 cut(s)	476, 572, 620
TaaI	ACNGT	3 cut(s)	168, 630, 729
TaqI	TCGA	3 cut(s)	334, 687, 718
TasI	AATT	3 cut(s)	7, 185, 562
TatI	WGTACW	3 cut(s)	72, 99, 171
TauI	GCSGC	1 cut(s)	636
TfiI	GAWTC	2 cut(s)	623, 648
Tru1I	TTAA	5 cut(s)	21, 126, 249, 428, 756
Tru9I	TTAA	5 cut(s)	21, 126, 249, 428, 756
TscAI	CASTG	2 cut(s)	20, 635
TseFI	GTSAC	1 cut(s)	162
TseI	GCWGC	2 cut(s)	368, 636
Tsp45I	GTSAC	1 cut(s)	162
TspDTI	ATGAA	6 cut(s)	17, 291, 431, 497, 530, 603
TspRI	CASTG	2 cut(s)	20, 635
VpaK11BI	GGWCC	1 cut(s)	93
XapI	RAATTY	3 cut(s)	7, 185, 562
XceI	RCATGY	1 cut(s)	163
XmiI	GTMKAC	1 cut(s)	535
XmnI	GAANNNNTTC	2 cut(s)	8, 305
XspI	CTAG	3 cut(s)	476, 572, 620
ZrmI	AGTACT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.