Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007507

Physical Location & Seq

Genomic Coordinates Forward (+)

56060279 .. 56064023

Gene Structure 3745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00261930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGAAGAATTTTCAATGGTATAAGCAGATTTCCAACAATGGCAAACCAGAGAGGAGGCTGTCACTTGGAGAATACAATAGGGCGGTTTCGTGGTCCAAGTACTTGGTATCTCCAGGGGCTGAGATTAAAGGCCAAGCAGAGGAAGATTGGGGTGCTGACATGTCCCAATTGTACATTGGCTGCAAATTTGCTTCAGGGAGACATAGCAGGATTTACAGAGGGGTTTATAAGCAGAAGGATGTAGCGATTAAGCTTATAAGCCAGCCGGAGGAGGATGCCGACTTGGCTGTTTTGCTCGAAAACCAGTTCACTTCAGAAGTGGCTTTGCTGTTTCGATTGCAACACCCGAATATCCTCACTTTTGTTGGAGCTTGTAAGAAGCCTCCTGTGTTCTGCATAATCACCGAGTATTTATCCGGGGGATCGCTGAGAAAGTATCTCCATCAGCAGGAGCCACACTCCCTTCCACTCAGCCTAGTTCTCAAATTAGCCCTTGATATTGCACGCGGAATGCAATATCTTCATTCTCAAGGTATACTTCATAGGGATCTCAAGTCGGAAAATCTATTGCTAGGAGAAGATATGTCTGTGAAAGTTGCGGATTTTGGTATCTCGTGCTTGGAATCACAGTGCGGCAGTGCTAAGGGGTTCACCGGGACTTACCGTTGGATGGCGCCTGAAATGATAAAAGAGAAACACCATACGAAAAAAGTTGATGTTTACAGTTTTGGCATAGTTCTTTGGGAACTTTTAACAGCACTGACACCATTTGACAACATGACTCCGGAACAGGCTGCATTTGCAGTGTCACAGAAGAATGCAAGACCTCCGTTGCCGCCCACATGCCCAACGGCATTCAGTCGTCTCATCAACCGATGTTGGTCAAGTCGTCCGAAGAAGCGACCGGACTTCGATGAGATAGTTTACATTTTGGAAGGTTATGCAGAGTCCCTTGAGCAGGACCCAGATTTTTTCTCATCCTACAAATCTCCCCAAGATCACACCCTTTCCCGATGCTTTCCAAAATGGATCGGTCGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

347

Amino Acids

39.53

Weight (kDa)

8.64

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	61 - 309	2.7e-64	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	65 - 308	3.3e-54	Protein kinase domain
Pkinase_fungal	PF17667	166 - 247	7.9e-07	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007507)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05240 FvH4_5g05240 FvH4_5g05240
malus_domestica	MD06G1175200.v1.1 MD14G1182000.v1.1
prunus_persica	Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1 Prupe.5G174600_v2.0.a1
pyrus_communis	pycom06g15600 pycom14g15100
rosa_chinensis	RchiOBHm_Chr7g0193661
rosa_laevigata	RLG00000004253
rosa_multiflora	Rmu_sc0001436.1_g000007
rosa_roxburghii	Rroxscaffold_3G00261930
rosa_rugosa	Rorug07G0011200 Rorug07G0011300 Rorug07G0011300
rosa_samantha	Rh7AG137900 Rh7BG138100 Rh7CG141800 Rh7DG139200
rosa_wichuraiana	Rw7G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	228, 257
AccB1I	GGYRCC	1 cut(s)	673
AccI	GTMKAC	1 cut(s)	535
AccII	CGCG	1 cut(s)	507
AccIII	TCCGGA	1 cut(s)	784
AciI	CCGC	5 cut(s)	83, 507, 599, 633, 836
AclWI	GGATC	3 cut(s)	430, 555, 1037
AcsI	RAATTY	2 cut(s)	7, 185
AcuI	CTGAAG	2 cut(s)	177, 297
AcyI	GRCGYC	1 cut(s)	674
AfaI	GTAC	2 cut(s)	101, 173
AfiI	CCNNNNNNNGG	5 cut(s)	139, 268, 448, 670, 958
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	2 cut(s)	253, 371
AluI	AGCT	2 cut(s)	253, 371
Alw26I	GTCTC	2 cut(s)	193, 869
AlwI	GGATC	3 cut(s)	430, 555, 1037
AlwNI	CAGNNNCTG	1 cut(s)	119
Aor13HI	TCCGGA	1 cut(s)	784
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	180, 794
ApoI	RAATTY	2 cut(s)	7, 185
AspLEI	GCGC	1 cut(s)	676
AspS9I	GGNCC	2 cut(s)	93, 961
AsuC2I	CCSGG	2 cut(s)	418, 655
AsuHPI	GGTGA	2 cut(s)	394, 643
AvaII	GGWCC	2 cut(s)	93, 961
BanI	GGYRCC	1 cut(s)	673
BauI	CACGAG	1 cut(s)	613
BbvI	GCAGC	2 cut(s)	167, 781
BccI	CCATC	2 cut(s)	450, 664
BceAI	ACGGC	1 cut(s)	867
BciT130I	CCWGG	1 cut(s)	114
BcnI	CCSGG	2 cut(s)	418, 655
BcoDI	GTCTC	2 cut(s)	193, 869
BfaI	CTAG	2 cut(s)	476, 572
BfoI	RGCGCY	1 cut(s)	677
BglI	GCCNNNNNGGC	1 cut(s)	284
BisI	GCNGC	4 cut(s)	181, 634, 795, 836
BlsI	GCNGC	4 cut(s)	182, 635, 796, 837
BmcAI	AGTACT	1 cut(s)	101
Bme1390I	CCNGG	3 cut(s)	114, 418, 655
Bme18I	GGWCC	2 cut(s)	93, 961
BmgT120I	GGNCC	2 cut(s)	93, 961
BmiI	GGNNCC	3 cut(s)	453, 675, 963
BmrFI	CCNGG	3 cut(s)	114, 418, 655
BmsI	GCATC	2 cut(s)	265, 1004
BplI	GAGNNNNNCTC	2 cut(s)	443, 475
BpmI	CTGGAG	1 cut(s)	96
Bpu10I	CCTNAGC	1 cut(s)	642
BpuEI	CTTGAG	3 cut(s)	513, 536, 974
BpuMI	CCSGG	2 cut(s)	418, 655
BsaHI	GRCGYC	1 cut(s)	674
BsaJI	CCNNGG	2 cut(s)	113, 417
BsaWI	WCCGGW	2 cut(s)	784, 904
Bsc4I	CCNNNNNNNGG	5 cut(s)	139, 268, 448, 670, 958
Bse1I	ACTGG	1 cut(s)	304
BseAI	TCCGGA	1 cut(s)	784
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	113, 417
BseGI	GGATG	4 cut(s)	244, 280, 675, 977
BseLI	CCNNNNNNNGG	5 cut(s)	139, 268, 448, 670, 958
BseMII	CTCAG	3 cut(s)	111, 419, 484
BseNI	ACTGG	1 cut(s)	304
BseRI	GAGGAG	2 cut(s)	67, 284
BseXI	GCAGC	2 cut(s)	167, 781
Bsh1236I	CGCG	1 cut(s)	507
Bsh1285I	CGRYCG	2 cut(s)	905, 1036
BshFI	GGCC	1 cut(s)	132
BshNI	GGYRCC	1 cut(s)	673
BsiEI	CGRYCG	2 cut(s)	905, 1036
BsiSI	CCGG	5 cut(s)	266, 417, 654, 785, 905
BslFI	GGGAC	3 cut(s)	148, 670, 934
BslI	CCNNNNNNNGG	5 cut(s)	139, 268, 448, 670, 958
BsmAI	GTCTC	2 cut(s)	193, 869
BsmBI	CGTCTC	1 cut(s)	869
BsmFI	GGGAC	3 cut(s)	148, 670, 934
BsmI	GAATGC	3 cut(s)	516, 823, 854
BsnI	GGCC	1 cut(s)	132
Bsp13I	TCCGGA	1 cut(s)	784
Bsp1407I	TGTACA	1 cut(s)	171
Bsp143I	GATC	4 cut(s)	422, 547, 997, 1029
BspACI	CCGC	5 cut(s)	83, 507, 599, 633, 836
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	3 cut(s)	112, 420, 483
BspEI	TCCGGA	1 cut(s)	784
BspFNI	CGCG	1 cut(s)	507
BspLI	GGNNCC	3 cut(s)	453, 675, 963
BspPI	GGATC	3 cut(s)	430, 555, 1037
BspT107I	GGYRCC	1 cut(s)	673
BsrGI	TGTACA	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	304
BssECI	CCNNGG	2 cut(s)	113, 417
BssMI	GATC	4 cut(s)	422, 547, 997, 1029
BssNAI	GTATAC	1 cut(s)	536
BssNI	GRCGYC	1 cut(s)	674
BssSI	CACGAG	1 cut(s)	613
Bst1107I	GTATAC	1 cut(s)	536
Bst2BI	CACGAG	1 cut(s)	613
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	3 cut(s)	630, 665, 725
BstACI	GRCGYC	1 cut(s)	674
BstAUI	TGTACA	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	263, 505
BstDEI	CTNAG	4 cut(s)	120, 428, 470, 642
BstENI	CCTNNNNNAGG	1 cut(s)	956
BstF5I	GGATG	4 cut(s)	244, 280, 675, 977
BstFNI	CGCG	1 cut(s)	507
BstH2I	RGCGCY	1 cut(s)	677
BstHHI	GCGC	1 cut(s)	676
BstKTI	GATC	4 cut(s)	425, 550, 1000, 1032
BstMAI	GTCTC	2 cut(s)	193, 869
BstMBI	GATC	4 cut(s)	422, 547, 997, 1029
BstMCI	CGRYCG	2 cut(s)	905, 1036
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 800
BstNI	CCWGG	1 cut(s)	114
BstNSI	RCATGY	2 cut(s)	163, 846
BstSCI	CCNGG	3 cut(s)	112, 416, 653
BstUI	CGCG	1 cut(s)	507
BstV1I	GCAGC	2 cut(s)	167, 781
BstX2I	RGATCY	1 cut(s)	547
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	547
BstZ17I	GTATAC	1 cut(s)	536
BsuRI	GGCC	1 cut(s)	132
BtsCI	GGATG	4 cut(s)	244, 280, 675, 977
BtsI	GCAGTG	2 cut(s)	643, 810
BtsIMutI	CAGTG	4 cut(s)	635, 643, 758, 810
Cac8I	GCNNGC	2 cut(s)	263, 505
CaiI	CAGNNNCTG	1 cut(s)	119
CfoI	GCGC	1 cut(s)	676
Cfr13I	GGNCC	2 cut(s)	93, 961
Csp6I	GTAC	2 cut(s)	100, 172
CviAII	CATG	3 cut(s)	160, 778, 843
CviQI	GTAC	2 cut(s)	100, 172
DdeI	CTNAG	4 cut(s)	120, 428, 470, 642
DinI	GGCGCC	1 cut(s)	675
DpnI	GATC	4 cut(s)	424, 549, 999, 1031
DpnII	GATC	4 cut(s)	422, 547, 997, 1029
Eco47I	GGWCC	2 cut(s)	93, 961
Eco57I	CTGAAG	2 cut(s)	177, 297
EcoNI	CCTNNNNNAGG	1 cut(s)	956
EcoO109I	RGGNCCY	1 cut(s)	961
EcoRII	CCWGG	1 cut(s)	112
EgeI	GGCGCC	1 cut(s)	675
EheI	GGCGCC	1 cut(s)	675
Esp3I	CGTCTC	1 cut(s)	869
FaeI	CATG	3 cut(s)	163, 781, 846
FalI	AAGNNNNNCTT	2 cut(s)	522, 554
FaqI	GGGAC	3 cut(s)	148, 670, 934
FatI	CATG	3 cut(s)	159, 777, 842
FblI	GTMKAC	1 cut(s)	535
Fnu4HI	GCNGC	4 cut(s)	181, 634, 795, 836
FokI	GGATG	4 cut(s)	251, 287, 682, 964
Fsp4HI	GCNGC	4 cut(s)	181, 634, 795, 836
FspBI	CTAG	2 cut(s)	476, 572
GlaI	GCGC	1 cut(s)	675
GluI	GCNGC	4 cut(s)	181, 634, 795, 836
GsuI	CTGGAG	1 cut(s)	96
HaeII	RGCGCY	1 cut(s)	677
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	5 cut(s)	266, 417, 654, 785, 905
HhaI	GCGC	1 cut(s)	676
Hin1I	GRCGYC	1 cut(s)	674
Hin1II	CATG	3 cut(s)	163, 781, 846
Hin6I	GCGC	1 cut(s)	674
HinP1I	GCGC	1 cut(s)	674
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	3 cut(s)	623, 781, 947
HpaII	CCGG	5 cut(s)	266, 417, 654, 785, 905
HphI	GGTGA	2 cut(s)	394, 643
Hpy166II	GTNNAC	5 cut(s)	309, 536, 651, 721, 925
Hpy188I	TCNGA	3 cut(s)	316, 559, 894
Hpy188III	TCNNGA	2 cut(s)	785, 1011
Hpy8I	GTNNAC	5 cut(s)	309, 536, 651, 721, 925
HpyAV	CCTTC	3 cut(s)	229, 473, 929
HpyCH4III	ACNGT	3 cut(s)	630, 665, 725
HpyCH4V	TGCA	9 cut(s)	183, 340, 396, 503, 514, 797, 803, 821, 944
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 800
HpyF3I	CTNAG	4 cut(s)	120, 428, 470, 642
Hsp92I	GRCGYC	1 cut(s)	674
Hsp92II	CATG	3 cut(s)	163, 781, 846
HspAI	GCGC	1 cut(s)	674
KasI	GGCGCC	1 cut(s)	673
Kpn2I	TCCGGA	1 cut(s)	784
Kzo9I	GATC	4 cut(s)	422, 547, 997, 1029
LmnI	GCTCC	2 cut(s)	368, 451
Lsp1109I	GCAGC	2 cut(s)	167, 781
LweI	GCATC	2 cut(s)	265, 1004
MaeI	CTAG	2 cut(s)	476, 572
MaeIII	GTNAC	2 cut(s)	60, 807
MalI	GATC	4 cut(s)	424, 549, 999, 1031
MboI	GATC	4 cut(s)	422, 547, 997, 1029
MboII	GAAGA	6 cut(s)	16, 155, 512, 590, 826, 907
MfeI	CAATTG	1 cut(s)	167
MflI	RGATCY	1 cut(s)	547
MluCI	AATT	4 cut(s)	7, 167, 185, 485
Mly113I	GGCGCC	1 cut(s)	674
MlyI	GAGTC	2 cut(s)	775, 956
MmeI	TCCRAC	4 cut(s)	57, 346, 537, 647
MnlI	CCTC	9 cut(s)	45, 48, 133, 212, 262, 265, 365, 393, 837
MroI	TCCGGA	1 cut(s)	784
MseI	TTAA	3 cut(s)	126, 249, 752
MspI	CCGG	5 cut(s)	266, 417, 654, 785, 905
MspR9I	CCNGG	3 cut(s)	114, 418, 655
MunI	CAATTG	1 cut(s)	167
Mva1269I	GAATGC	3 cut(s)	516, 823, 854
MvaI	CCWGG	1 cut(s)	114
MvnI	CGCG	1 cut(s)	507
MwoI	GCNNNNNNNGC	2 cut(s)	284, 800
NarI	GGCGCC	1 cut(s)	674
NciI	CCSGG	2 cut(s)	418, 655
NdeII	GATC	4 cut(s)	422, 547, 997, 1029
NlaIII	CATG	3 cut(s)	163, 781, 846
NlaIV	GGNNCC	3 cut(s)	453, 675, 963
NmuCI	GTSAC	2 cut(s)	60, 807
NspI	RCATGY	2 cut(s)	163, 846
PciI	ACATGT	1 cut(s)	159
PctI	GAATGC	3 cut(s)	516, 823, 854
PfeI	GAWTC	1 cut(s)	623
PkrI	GCNGC	4 cut(s)	182, 635, 796, 837
PleI	GAGTC	2 cut(s)	775, 955
PluTI	GGCGCC	1 cut(s)	677
PpsI	GAGTC	2 cut(s)	775, 955
PpuMI	RGGWCCY	1 cut(s)	961
PscI	ACATGT	1 cut(s)	159
PsiI	TTATAA	2 cut(s)	228, 257
Psp5II	RGGWCCY	1 cut(s)	961
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	3 cut(s)	453, 675, 963
PspPI	GGNCC	2 cut(s)	93, 961
PspPPI	RGGWCCY	1 cut(s)	961
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	547
RsaI	GTAC	2 cut(s)	101, 173
RsaNI	GTAC	2 cut(s)	100, 172
SaqAI	TTAA	3 cut(s)	126, 249, 752
SatI	GCNGC	4 cut(s)	181, 634, 795, 836
Sau3AI	GATC	4 cut(s)	422, 547, 997, 1029
Sau96I	GGNCC	2 cut(s)	93, 961
ScaI	AGTACT	1 cut(s)	101
SchI	GAGTC	2 cut(s)	775, 956
ScrFI	CCNGG	3 cut(s)	114, 418, 655
SetI	ASST	5 cut(s)	255, 373, 535, 829, 940
SfaNI	GCATC	2 cut(s)	265, 1004
SfoI	GGCGCC	1 cut(s)	675
SinI	GGWCC	2 cut(s)	93, 961
SmlI	CTYRAG	3 cut(s)	528, 551, 953
SmoI	CTYRAG	3 cut(s)	528, 551, 953
Sse9I	AATT	4 cut(s)	7, 167, 185, 485
SsiI	CCGC	5 cut(s)	83, 507, 599, 633, 836
SspDI	GGCGCC	1 cut(s)	673
SspMI	CTAG	2 cut(s)	476, 572
StyD4I	CCNGG	3 cut(s)	112, 416, 653
TaaI	ACNGT	3 cut(s)	630, 665, 725
TaqI	TCGA	3 cut(s)	297, 334, 912
TaqII	GACCGA	1 cut(s)	1022
TasI	AATT	4 cut(s)	7, 167, 185, 485
TatI	WGTACW	2 cut(s)	99, 171
TauI	GCSGC	2 cut(s)	636, 838
TfiI	GAWTC	1 cut(s)	623
Tru1I	TTAA	3 cut(s)	126, 249, 752
Tru9I	TTAA	3 cut(s)	126, 249, 752
TscAI	CASTG	4 cut(s)	635, 643, 765, 810
TseFI	GTSAC	2 cut(s)	60, 807
TseI	GCWGC	2 cut(s)	180, 794
Tsp45I	GTSAC	2 cut(s)	60, 807
TspDTI	ATGAA	3 cut(s)	17, 512, 530
TspGWI	ACGGA	1 cut(s)	819
TspRI	CASTG	4 cut(s)	635, 643, 765, 810
VpaK11BI	GGWCC	2 cut(s)	93, 961
XagI	CCTNNNNNAGG	1 cut(s)	956
XapI	RAATTY	2 cut(s)	7, 185
XceI	RCATGY	2 cut(s)	163, 846
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	535
XspI	CTAG	2 cut(s)	476, 572
ZrmI	AGTACT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.