FvH4_5g05260

DYW family of nucleic acid deaminases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014735
Physical Location & Seq
Reverse (-)
3068145 .. 3071243
3099 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g05260.t1

Sequence Viewer

Length: 2685 bp
ATGGGTGCTGTGAGACCACAAGGCTCGTGCTGGGTGAGACCATCGGAGCCGATTCTCTGCCACAATTTCAAAGGTGCTTCATTGACGCCTTGCTCAGTTTCTTTCACTTCAAACTTTCAATCTTTACGTTCTAATTCACAGTTGATGCAAAACCCAACTCGGAAATCGAAGATCCGAGGTGGGTTTCCGGTGAATTGTTCCGTTAACGAAGTTCTAACGGCCGGTGAGGTGATCAAGAAGTACGTTGAGAACGGGAATTGCGAAGATGCAGTAGCGGTTTATGTTAGATTGCTTGAGCTGGGTTTGCCTGTAGCTGAGGAATTTCAGTTCTTTCCGATTTTGATTAAGGCGTTTGGGGGGTTCTGTGATGTGGGCAAGGCTAGGGAGGTTCATGGGCACGTGTTGAAATTGGGGGTTTTGGGCGATGTTTACGATGCCAATTCGATTTTGGGGGTTTACTGGAAATGTGGGTCGGTTGAGGATGCAGTCCAGCTGTTTGCGAAAATGCCTGAGAGGGATTTGGTGTCTTGGAATACGATGATTTCTGGGTTTTGTCATTTAGGTGATTATGTGAGGTGTTTGGAGGTGTTTAGGAGGATGGTTAGGGACCATTGGGTGTTGCCGAATCGGGTGGCTTGTCTTTCGGGTCTTACTTCCTGTGCTTCGGTGAGGTCTTTGGTTCATGGGAGAGAGATTCATGGGTTTGTTGTGAAGCGTTGGCTGGATGGTGATCAGTATATGGTTAGTGGGTTGGTTGATATGTATATGAAATGTGGGGATGTGAAGAATGCGGAATGTGTGTATAGGAGGGTTGTTGATGATGAGTGTGTTAGAGGGAATACGGTGATTTGGAATGTGATGATTTCGGGGTATGTATGTAATGGGTGTTGGCCGCAGGCGGTGGAGTTGTTTCTGGAGATGTTGGAGATTGGGTTGTTACCGGATACTTCCACAATGGTGGCCGTTACAGGTTTGTGCTCTCAGCTAATGGATTTAGCGTTTGGGAAGCAGATTCATAAATTTTGTTTGAGCACTCAGTTGAGCACTGATGTGAGAGTTGAAACAGCTCTTATGGACATGTATTTCAAATGTGGTGATATTACAACTGGTCTTGAGATCTTTAGAAGGTCCCTGAAACGTAACATGGTCATGTGGAGCGCTGCCATCTCAAATTTGTCTCAAAGTAGTCATCCTCATGAGGCGTTGAGTTTGTTTTATGACTATATTTTAGAATATGGCTTTGTGGATTCTGTCATTGTCTTGGCTGTTCTGCGGGCTTCTTCATCCTTGGCTGTTAAGTCTATAGGGATGGAAATCCATGGCCTAGCAGTGAAATTGGGGTTTGATTCAGACGTTTTTGTTGCCAGTGCAATAGTTGATTTTTATGCTAAATGCAGAGATGTTGAGTCTGCTCAACAAGTATTTTATAGACTACGAGCTAGAGATTTGGTATCATGGAATGCCTTGATATCCGGATATGCTCAGAATGAGTATCTAGATGAAGCTTTAGAGGCATCCCTTGAGATGCAACTAGAAGAAGTTAGACCCAATACTGTGACGGTTGCTAGTATTCTATCAGTTTGTGCTCAGTTGTCAGTCATAATGTTGTGCAAGGAGGTTCATGGTTACCTATTACGACAAGAATTTGACTCCAATGTTCTTGTGAGCAATTCCCTGATAACTACCTATGCAAAATGTGGAGACATAAAGAGCTCAAGGAGTGTGTTTGAGACAATGCATCAAAGAAATGAAGTTTCATGGAACTCAATTCTTCTGGGGTTAGGAATCCATGGCCATGCAGACGAAGCATTTGCTTTATTTAGAAAAATGGAAGCAGCAGGACTGAAGCCTGATCATGCAACTTTTACAGCTCTTCTTTCTGTATGCAGCCATGCAGGGAGGGTTGAAGAGGGGACGAAGTATTTTCAGCATATGGTCGAAGTTTATAAAATTGAGCCTCAACTTGAACAGTACACCTGCATGGTTGATCTTTTAGGCCGAGCTGGCCATTTAAAGCATGCATATGATATTATTTCAACAATGCCTTGTCCATCCGATGATCGTATATGGGGATCGTTGCTTGGATCATGTAAAATTCATGGTGATGAAAGACTGGCAGAAGCTGTGGCTGATCATATCTTTCAACTGGATCCTACTAATATTGGCTACCGTACACTTCTTGCAAACTTGTATGAAGAGCGTGGGAAATGGAATGAAGTTACCAAGGTTAGATCAGACATCAGAGGTGTGGGACTCAAGAAGACACCTGGGTGCAGTTGGATTGAAGTTGATAGCAATCTTCATACCTTTACTGCAGGTGATCATTCTCATTATGAGTCGGAGGAGATATATGCTACAATAGAAAATCTTACAACTGCAATTAGGAAGGCAGGATATATCCCTCAATTACTGACTGTTGATAAGGGGCTTGATGAGGTTCTTGATGAAGATCTCACATCATTTAGAGACAAGGGCAAGGGTTTGTTGTTTCTGTCTACAAGTACAAACAATCACCAACAGTGTAGACCTCATGTTAAAAGTAAGTTGGTTACTCAGGACATGTACCGAGTTAGAAGAGCTATTCTAGATGATTGGACTAAATTCTGGACTGCTTTTGCAAAGATGATTCTCTCTGGCTCTCTTGACTGTTGCTTGACGGAACTGTTTGCGCCCAGATACATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

895

Amino Acids

100.12

Weight (kDa)

6.0

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 175 - 203 5e-08 PPR repeat
PPR_2 PF13041 280 - 319 3e-07 PPR repeat family
PPR PF01535 282 - 312 1e-07 PPR repeat
PPR_2 PF13041 482 - 529 5.8e-08 PPR repeat family
PPR_2 PF13041 583 - 630 6.5e-11 PPR repeat family
PPR_long PF17177 599 - 681 2.7e-07 Pentacotripeptide-repeat region of PRORP
E_motif PF20431 700 - 762 1e-14 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014735)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g05260
malus_domestica MD06G1174400.v1.1 MD06G1174600.v1.1
prunus_persica Prupe.5G174400_v2.0.a1 Prupe.5G174400_v2.0.a1 Prupe.5G174400_v2.0.a1
pyrus_communis pycom06g15570
rosa_chinensis RchiOBHm_Chr7g0193611
rosa_laevigata RLG00000004256
rosa_multiflora Rmu_sc0042944.1_g000002
rosa_roxburghii Rroxscaffold_3G00261960
rosa_rugosa Rorug07G0011000 Rorug07G0011100
rosa_samantha Rh7AG137600 Rh7BG137800 Rh7CG141400
rosa_wichuraiana Rw7G011720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1947
AarI CACCTGC 2 cut(s) 1985, 2306
Acc36I ACCTGC 2 cut(s) 1985, 2306
AccI GTMKAC 2 cut(s) 2495, 2524
AccIII TCCGGA 1 cut(s) 1472
AciI CCGC 5 cut(s) 275, 791, 893, 899, 1273
AclWI GGATC 5 cut(s) 166, 2080, 2092, 2144, 2157
AcoI YGGCCR 5 cut(s) 219, 890, 960, 1792, 2005
AcsI RAATTY 6 cut(s) 320, 1019, 1171, 1643, 2094, 2600
AcuI CTGAAG 1 cut(s) 1865
AcvI CACGTG 1 cut(s) 400
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 5 cut(s) 242, 1973, 2173, 2503, 2564
AfeI AGCGCT 1 cut(s) 1159
AflIII ACRYGT 3 cut(s) 399, 1077, 2559
AjnI CCWGG 1 cut(s) 2266
AleI CACNNNNGTG 3 cut(s) 956, 1049, 2269
AloI GAACNNNNNNTCC 2 cut(s) 311, 343
Alw21I GWGCWC 5 cut(s) 980, 1034, 1046, 1588, 1715
Alw26I GTCTC 6 cut(s) 7, 31, 1182, 1695, 1724, 2460
AlwI GGATC 5 cut(s) 166, 2080, 2092, 2144, 2157
AlwNI CAGNNNCTG 1 cut(s) 2123
Aor13HI TCCGGA 1 cut(s) 1472
Aor51HI AGCGCT 1 cut(s) 1159
AoxI GGCC 7 cut(s) 219, 890, 960, 1321, 1792, 1996, 2005
ApeKI GCWGC 3 cut(s) 1160, 1835, 1887
ApoI RAATTY 6 cut(s) 320, 1019, 1171, 1643, 2094, 2600
ArsI GACNNNNNNTTYG 2 cut(s) 1793, 1825
AspLEI GCGC 2 cut(s) 1160, 2671
AspS9I GGNCC 2 cut(s) 607, 1128
AvaII GGWCC 2 cut(s) 607, 1128
BaeGI GKGCMC 1 cut(s) 399
BalI TGGCCA 2 cut(s) 1794, 2007
BamHI GGATCC 1 cut(s) 2149
BanII GRGCYC 1 cut(s) 1715
BauI CACGAG 1 cut(s) 25
BbrPI CACGTG 1 cut(s) 400
BbsI GAAGAC 1 cut(s) 2267
Bbv12I GWGCWC 5 cut(s) 980, 1034, 1046, 1588, 1715
BbvCI CCTCAGC 1 cut(s) 315
BbvI GCAGC 3 cut(s) 1147, 1847, 1899
BccI CCATC 6 cut(s) 49, 592, 719, 1172, 1303, 2059
BceAI ACGGC 2 cut(s) 234, 947
BcgI CGANNNNNNTGC 2 cut(s) 1793, 1827
BciT130I CCWGG 1 cut(s) 2268
BciVI GTATCC 1 cut(s) 937
BclI TGATCA 5 cut(s) 231, 730, 1852, 2131, 2320
BcoDI GTCTC 6 cut(s) 7, 31, 1182, 1695, 1724, 2460
BfaI CTAG 7 cut(s) 381, 1325, 1440, 1496, 1532, 1566, 2585
BfmI CTRYAG 3 cut(s) 309, 1302, 2313
BfoI RGCGCY 1 cut(s) 1161
BfuAI ACCTGC 2 cut(s) 1985, 2306
BfuI GTATCC 1 cut(s) 937
BglI GCCNNNNNGGC 1 cut(s) 2004
BglII AGATCT 2 cut(s) 1116, 2449
BisI GCNGC 4 cut(s) 893, 1161, 1836, 1888
BlsI GCNGC 4 cut(s) 894, 1162, 1837, 1889
Bme1390I CCNGG 1 cut(s) 2268
Bme18I GGWCC 2 cut(s) 607, 1128
BmgT120I GGNCC 2 cut(s) 607, 1128
BmiI GGNNCC 4 cut(s) 48, 608, 1130, 2151
BmrFI CCNGG 1 cut(s) 2268
BmsI GCATC 7 cut(s) 135, 256, 424, 472, 1515, 1523, 1747
BpiI GAAGAC 1 cut(s) 2267
BpmI CTGGAG 1 cut(s) 935
Bpu10I CCTNAGC 1 cut(s) 315
BpuEI CTTGAG 5 cut(s) 314, 1133, 1541, 1699, 2240
BsaAI YACGTR 1 cut(s) 400
BsaBI GATNNNNATC 4 cut(s) 729, 1313, 2295, 2448
BsaHI GRCGYC 1 cut(s) 86
BsaI GGTCTC 2 cut(s) 7, 31
BsaJI CCNNGG 6 cut(s) 175, 1287, 1318, 1789, 2223, 2267
BsaWI WCCGGW 3 cut(s) 187, 940, 1472
BsaXI ACNNNNNCTCC 2 cut(s) 917, 947
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 5 cut(s) 464, 1111, 1365, 2118, 2151
Bse8I GATNNNNATC 4 cut(s) 729, 1313, 2295, 2448
BseAI TCCGGA 1 cut(s) 1472
BseBI CCWGG 1 cut(s) 2268
BseDI CCNNGG 6 cut(s) 175, 1287, 1318, 1789, 2223, 2267
BseGI GGATG 9 cut(s) 487, 603, 730, 784, 1189, 1283, 1314, 1514, 2051
BseJI GATNNNNATC 4 cut(s) 729, 1313, 2295, 2448
BseMII CTCAG 8 cut(s) 108, 306, 501, 995, 1049, 1496, 1601, 2567
BseNI ACTGG 5 cut(s) 464, 1111, 1365, 2118, 2151
BseRI GAGGAG 1 cut(s) 2357
BseSI GKGCMC 1 cut(s) 399
BseX3I CGGCCG 1 cut(s) 219
BseXI GCAGC 3 cut(s) 1147, 1847, 1899
BseYI CCCAGC 2 cut(s) 30, 298
BsgI GTGCAG 1 cut(s) 2293
Bsh1285I CGRYCG 1 cut(s) 222
BshFI GGCC 7 cut(s) 221, 892, 962, 1323, 1794, 1998, 2007
BsiEI CGRYCG 1 cut(s) 222
BsiHKAI GWGCWC 5 cut(s) 980, 1034, 1046, 1588, 1715
BsiSI CCGG 4 cut(s) 188, 222, 941, 1473
BslFI GGGAC 4 cut(s) 620, 1114, 1927, 2265
BsmAI GTCTC 6 cut(s) 7, 31, 1182, 1695, 1724, 2460
BsmFI GGGAC 4 cut(s) 620, 1114, 1927, 2265
BsmI GAATGC 2 cut(s) 793, 1465
BsnI GGCC 7 cut(s) 221, 892, 962, 1323, 1794, 1998, 2007
Bso31I GGTCTC 2 cut(s) 7, 31
Bsp1286I GDGCHC 6 cut(s) 399, 980, 1034, 1046, 1588, 1715
Bsp13I TCCGGA 1 cut(s) 1472
Bsp19I CCATGG 2 cut(s) 1318, 1789
BspACI CCGC 5 cut(s) 275, 791, 893, 899, 1273
BspANI GGCC 7 cut(s) 221, 892, 962, 1323, 1794, 1998, 2007
BspCNI CTCAG 8 cut(s) 107, 307, 502, 994, 1048, 1495, 1600, 2566
BspEI TCCGGA 1 cut(s) 1472
BspHI TCATGA 1 cut(s) 1195
BspLI GGNNCC 4 cut(s) 48, 608, 1130, 2151
BspMAI CTGCAG 1 cut(s) 2317
BspMI ACCTGC 2 cut(s) 1985, 2306
BspPI GGATC 5 cut(s) 166, 2080, 2092, 2144, 2157
BspQI GCTCTTC 3 cut(s) 1878, 2190, 2569
BspTNI GGTCTC 2 cut(s) 7, 31
BsrFI RCCGGY 1 cut(s) 221
BsrI ACTGG 5 cut(s) 464, 1111, 1365, 2118, 2151
BssAI RCCGGY 1 cut(s) 221
BssECI CCNNGG 6 cut(s) 175, 1287, 1318, 1789, 2223, 2267
BssNI GRCGYC 1 cut(s) 86
BssSI CACGAG 1 cut(s) 25
BssT1I CCWWGG 4 cut(s) 1287, 1318, 1789, 2223
Bst2BI CACGAG 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 2268
Bst6I CTCTTC 4 cut(s) 1878, 1902, 2190, 2569
BstACI GRCGYC 1 cut(s) 86
BstBAI YACGTR 1 cut(s) 400
BstC8I GCNNGC 4 cut(s) 897, 1275, 2005, 2019
BstDEI CTNAG 8 cut(s) 94, 315, 510, 981, 1035, 1482, 1587, 2553
BstDSI CCRYGG 2 cut(s) 1318, 1789
BstEII GGTNACC 1 cut(s) 1625
BstF5I GGATG 9 cut(s) 487, 603, 730, 784, 1189, 1283, 1314, 1514, 2051
BstH2I RGCGCY 1 cut(s) 1161
BstHHI GCGC 2 cut(s) 1160, 2671
BstMAI GTCTC 6 cut(s) 7, 31, 1182, 1695, 1724, 2460
BstMCI CGRYCG 1 cut(s) 222
BstMWI GCNNNNNNNGC 4 cut(s) 304, 1511, 1805, 2004
BstNI CCWGG 1 cut(s) 2268
BstNSI RCATGY 3 cut(s) 1081, 2021, 2563
BstPI GGTNACC 1 cut(s) 1625
BstSCI CCNGG 1 cut(s) 2266
BstSFI CTRYAG 3 cut(s) 309, 1302, 2313
BstSLI GKGCMC 1 cut(s) 399
BstV1I GCAGC 3 cut(s) 1147, 1847, 1899
BstV2I GAAGAC 1 cut(s) 2267
BstX2I RGATCY 4 cut(s) 171, 1116, 2149, 2449
BstXI CCANNNNNNTGG 1 cut(s) 958
BstYI RGATCY 4 cut(s) 171, 1116, 2149, 2449
BstZI CGGCCG 1 cut(s) 219
BsuI GTATCC 1 cut(s) 937
BsuRI GGCC 7 cut(s) 221, 892, 962, 1323, 1794, 1998, 2007
BtgI CCRYGG 2 cut(s) 1318, 1789
BtgZI GCGATG 1 cut(s) 438
BtsCI GGATG 9 cut(s) 487, 603, 730, 784, 1189, 1283, 1314, 1514, 2051
BtsI GCAGTG 1 cut(s) 1335
BtsIMutI CAGTG 4 cut(s) 1044, 1335, 1372, 2525
BveI ACCTGC 2 cut(s) 1985, 2306
Cac8I GCNNGC 4 cut(s) 897, 1275, 2005, 2019
CaiI CAGNNNCTG 1 cut(s) 2123
CciI TCATGA 1 cut(s) 1195
CfoI GCGC 2 cut(s) 1160, 2671
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 2 cut(s) 607, 1128
CseI GACGC 1 cut(s) 94
Csp6I GTAC 5 cut(s) 241, 1972, 2172, 2502, 2563
CviQI GTAC 5 cut(s) 241, 1972, 2172, 2502, 2563
DdeI CTNAG 8 cut(s) 94, 315, 510, 981, 1035, 1482, 1587, 2553
DraI TTTAAA 1 cut(s) 2013
EaeI YGGCCR 5 cut(s) 219, 890, 960, 1792, 2005
EagI CGGCCG 1 cut(s) 219
Eam1104I CTCTTC 4 cut(s) 1878, 1902, 2190, 2569
EarI CTCTTC 4 cut(s) 1878, 1902, 2190, 2569
Ecl136II GAGCTC 1 cut(s) 1713
EclXI CGGCCG 1 cut(s) 219
Eco130I CCWWGG 4 cut(s) 1287, 1318, 1789, 2223
Eco24I GRGCYC 1 cut(s) 1715
Eco31I GGTCTC 2 cut(s) 7, 31
Eco32I GATATC 1 cut(s) 1470
Eco47I GGWCC 2 cut(s) 607, 1128
Eco47III AGCGCT 1 cut(s) 1159
Eco52I CGGCCG 1 cut(s) 219
Eco53kI GAGCTC 1 cut(s) 1713
Eco57I CTGAAG 1 cut(s) 1865
Eco72I CACGTG 1 cut(s) 400
Eco91I GGTNACC 1 cut(s) 1625
EcoICRI GAGCTC 1 cut(s) 1713
EcoO109I RGGNCCY 1 cut(s) 1128
EcoO65I GGTNACC 1 cut(s) 1625
EcoRII CCWGG 1 cut(s) 2266
EcoRV GATATC 1 cut(s) 1470
EcoT14I CCWWGG 4 cut(s) 1287, 1318, 1789, 2223
EcoT22I ATGCAT 2 cut(s) 1740, 2023
EcoT38I GRGCYC 1 cut(s) 1715
ErhI CCWWGG 4 cut(s) 1287, 1318, 1789, 2223
FaqI GGGAC 4 cut(s) 620, 1114, 1927, 2265
FauI CCCGC 1 cut(s) 1266
FauNDI CATATG 2 cut(s) 1932, 2023
FbaI TGATCA 5 cut(s) 231, 730, 1852, 2131, 2320
FblI GTMKAC 2 cut(s) 2495, 2524
Fnu4HI GCNGC 4 cut(s) 893, 1161, 1836, 1888
FokI GGATG 9 cut(s) 494, 610, 737, 791, 1176, 1270, 1321, 1501, 2038
FriOI GRGCYC 1 cut(s) 1715
Fsp4HI GCNGC 4 cut(s) 893, 1161, 1836, 1888
FspBI CTAG 7 cut(s) 381, 1325, 1440, 1496, 1532, 1566, 2585
GlaI GCGC 2 cut(s) 1159, 2670
GluI GCNGC 4 cut(s) 893, 1161, 1836, 1888
GsaI CCCAGC 2 cut(s) 34, 302
GsuI CTGGAG 1 cut(s) 935
HaeII RGCGCY 1 cut(s) 1161
HaeIII GGCC 7 cut(s) 221, 892, 962, 1323, 1794, 1998, 2007
HapII CCGG 4 cut(s) 188, 222, 941, 1473
HgaI GACGC 1 cut(s) 94
HhaI GCGC 2 cut(s) 1160, 2671
Hin1I GRCGYC 1 cut(s) 86
Hin6I GCGC 2 cut(s) 1158, 2669
HinP1I GCGC 2 cut(s) 1158, 2669
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 1503
HpaI GTTAAC 1 cut(s) 205
HpaII CCGG 4 cut(s) 188, 222, 941, 1473
Hpy166II GTNNAC 7 cut(s) 205, 430, 457, 1974, 2174, 2496, 2525
Hpy8I GTNNAC 7 cut(s) 205, 430, 457, 1974, 2174, 2496, 2525
HpyAV CCTTC 2 cut(s) 1119, 2380
HpyCH4IV ACGT 5 cut(s) 127, 243, 399, 1138, 1353
HpyF10VI GCNNNNNNNGC 4 cut(s) 304, 1511, 1805, 2004
HpyF3I CTNAG 8 cut(s) 94, 315, 510, 981, 1035, 1482, 1587, 2553
HpySE526I ACGT 5 cut(s) 127, 243, 399, 1138, 1353
Hsp92I GRCGYC 1 cut(s) 86
HspAI GCGC 2 cut(s) 1158, 2669
Kpn2I TCCGGA 1 cut(s) 1472
Ksp22I TGATCA 5 cut(s) 231, 730, 1852, 2131, 2320
KspAI GTTAAC 1 cut(s) 205
LguI GCTCTTC 3 cut(s) 1878, 2190, 2569
LmnI GCTCC 2 cut(s) 46, 1155
Lsp1109I GCAGC 3 cut(s) 1147, 1847, 1899
LweI GCATC 7 cut(s) 135, 256, 424, 472, 1515, 1523, 1747
MaeI CTAG 7 cut(s) 381, 1325, 1440, 1496, 1532, 1566, 2585
MaeII ACGT 5 cut(s) 127, 243, 399, 1138, 1353
MaeIII GTNAC 7 cut(s) 936, 964, 1139, 1555, 1625, 2218, 2548
MflI RGATCY 4 cut(s) 171, 1116, 2149, 2449
MhlI GDGCHC 6 cut(s) 399, 980, 1034, 1046, 1588, 1715
MlsI TGGCCA 2 cut(s) 1794, 2007
MluNI TGGCCA 2 cut(s) 1794, 2007
MlyI GAGTC 4 cut(s) 1415, 1643, 2247, 2345
MmeI TCCRAC 3 cut(s) 903, 2258, 2319
Mox20I TGGCCA 2 cut(s) 1794, 2007
Mph1103I ATGCAT 2 cut(s) 1740, 2023
MroI TCCGGA 1 cut(s) 1472
MscI TGGCCA 2 cut(s) 1794, 2007
MseI TTAA 6 cut(s) 204, 345, 1296, 2012, 2535, 2683
Msp20I TGGCCA 2 cut(s) 1794, 2007
MspA1I CMGCKG 1 cut(s) 493
MspI CCGG 4 cut(s) 188, 222, 941, 1473
MspR9I CCNGG 1 cut(s) 2268
Mva1269I GAATGC 2 cut(s) 793, 1465
MvaI CCWGG 1 cut(s) 2268
MwoI GCNNNNNNNGC 4 cut(s) 304, 1511, 1805, 2004
NcoI CCATGG 2 cut(s) 1318, 1789
NdeI CATATG 2 cut(s) 1932, 2023
NlaIV GGNNCC 4 cut(s) 48, 608, 1130, 2151
NmeAIII GCCGAG 1 cut(s) 2024
NmuCI GTSAC 1 cut(s) 1555
NsiI ATGCAT 2 cut(s) 1740, 2023
NspI RCATGY 3 cut(s) 1081, 2021, 2563
OliI CACNNNNGTG 3 cut(s) 956, 1049, 2269
PaeI GCATGC 1 cut(s) 2021
PagI TCATGA 1 cut(s) 1195
PaqCI CACCTGC 2 cut(s) 1985, 2306
PciI ACATGT 2 cut(s) 1077, 2559
PciSI GCTCTTC 3 cut(s) 1878, 2190, 2569
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PctI GAATGC 2 cut(s) 793, 1465
PfeI GAWTC 8 cut(s) 52, 625, 694, 1012, 1247, 1346, 1785, 2626
PkrI GCNGC 4 cut(s) 894, 1162, 1837, 1889
PleI GAGTC 4 cut(s) 1414, 1643, 2247, 2344
PmaCI CACGTG 1 cut(s) 400
PmlI CACGTG 1 cut(s) 400
PpsI GAGTC 4 cut(s) 1414, 1643, 2247, 2344
Ppu21I YACGTR 1 cut(s) 400
PpuMI RGGWCCY 1 cut(s) 1128
PscI ACATGT 2 cut(s) 1077, 2559
PsiI TTATAA 1 cut(s) 1947
Psp124BI GAGCTC 1 cut(s) 1715
Psp5II RGGWCCY 1 cut(s) 1128
Psp6I CCWGG 1 cut(s) 2266
PspCI CACGTG 1 cut(s) 400
PspEI GGTNACC 1 cut(s) 1625
PspFI CCCAGC 2 cut(s) 30, 298
PspGI CCWGG 1 cut(s) 2266
PspN4I GGNNCC 4 cut(s) 48, 608, 1130, 2151
PspPI GGNCC 2 cut(s) 607, 1128
PspPPI RGGWCCY 1 cut(s) 1128
PstI CTGCAG 1 cut(s) 2317
PstNI CAGNNNCTG 1 cut(s) 2123
PsuI RGATCY 4 cut(s) 171, 1116, 2149, 2449
PvuII CAGCTG 1 cut(s) 493
RsaI GTAC 5 cut(s) 242, 1973, 2173, 2503, 2564
RsaNI GTAC 5 cut(s) 241, 1972, 2172, 2502, 2563
SacI GAGCTC 1 cut(s) 1715
SapI GCTCTTC 3 cut(s) 1878, 2190, 2569
SaqAI TTAA 6 cut(s) 204, 345, 1296, 2012, 2535, 2683
SatI GCNGC 4 cut(s) 893, 1161, 1836, 1888
Sau96I GGNCC 2 cut(s) 607, 1128
SchI GAGTC 4 cut(s) 1415, 1643, 2247, 2345
ScrFI CCNGG 1 cut(s) 2268
SduI GDGCHC 6 cut(s) 399, 980, 1034, 1046, 1588, 1715
SfaNI GCATC 7 cut(s) 135, 256, 424, 472, 1515, 1523, 1747
SfcI CTRYAG 3 cut(s) 309, 1302, 2313
SfiI GGCCNNNNNGGCC 1 cut(s) 2004
SinI GGWCC 2 cut(s) 607, 1128
SmlI CTYRAG 5 cut(s) 293, 1112, 1520, 1714, 2255
SmoI CTYRAG 5 cut(s) 293, 1112, 1520, 1714, 2255
SphI GCATGC 1 cut(s) 2021
SsiI CCGC 5 cut(s) 275, 791, 893, 899, 1273
SspI AATATT 1 cut(s) 2161
SspMI CTAG 7 cut(s) 381, 1325, 1440, 1496, 1532, 1566, 2585
SstI GAGCTC 1 cut(s) 1715
StyD4I CCNGG 1 cut(s) 2266
StyI CCWWGG 4 cut(s) 1287, 1318, 1789, 2223
TaiI ACGT 5 cut(s) 130, 246, 402, 1141, 1356
TaqI TCGA 3 cut(s) 167, 443, 1938
TatI WGTACW 2 cut(s) 1971, 2501
TauI GCSGC 1 cut(s) 895
TfiI GAWTC 8 cut(s) 52, 625, 694, 1012, 1247, 1346, 1785, 2626
Tru1I TTAA 6 cut(s) 204, 345, 1296, 2012, 2535, 2683
Tru9I TTAA 6 cut(s) 204, 345, 1296, 2012, 2535, 2683
TscAI CASTG 4 cut(s) 1051, 1335, 1372, 2525
TseFI GTSAC 1 cut(s) 1555
TseI GCWGC 3 cut(s) 1160, 1835, 1887
Tsp45I GTSAC 1 cut(s) 1555
TspGWI ACGGA 2 cut(s) 190, 2672
TspRI CASTG 4 cut(s) 1051, 1335, 1372, 2525
VpaK11BI GGWCC 2 cut(s) 607, 1128
XapI RAATTY 6 cut(s) 320, 1019, 1171, 1643, 2094, 2600
XbaI TCTAGA 2 cut(s) 1495, 2584
XceI RCATGY 3 cut(s) 1081, 2021, 2563
XcmI CCANNNNNNNNNTGG 1 cut(s) 445
XmiI GTMKAC 2 cut(s) 2495, 2524
XspI CTAG 7 cut(s) 381, 1325, 1440, 1496, 1532, 1566, 2585
Zsp2I ATGCAT 2 cut(s) 1740, 2023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.