Rroxscaffold_3G00261960

DYW family of nucleic acid deaminases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0014735
Physical Location & Seq
Reverse (-)
56079356 .. 56081961
2606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00261960.1

Sequence Viewer

Length: 2340 bp
ATGGTGCCATATCTCATTCGCGGGAAGTGGGAATTCCCGATTGAACATTTTGGGTGGGGAGAGAAAATGAAAATGGCTGCTGTGAGAGTGAGACCACAAGGCTCGTGTTCGCTAAGACCGTCGGAGCCATTACACTGCTACAAGTTCAGAGGTGGTGCTACAACGACGCCTTGCTCAGTTTCTTTTGCTTCAAAGTTTCAATCTTTATGTTGCAAATCACAGTTCCTAGGAAACCCATCTCGGAAATCGAATTCCAGAGGTGGGTTTTCGAGGAATTGTTCCCGGATTGATGTTGTTTCGGCCGGTGAGCTGATCAAGAGGTACGTTGAGAGTGGGAATTGCGAGGATGCGATAGTGGTTTATGTTAAAATGCTTGAACTTGGTTTGCCTGTAGCTGAGGAATTTCAGTTCTTTCCAATTTTGATTAAGGCCTTTGGGGGGTTCTGTGATGTGGGCAAGGCTAGGGAGATTCATGGGCATGTGTTGAAATTGGGGGTTTTGGGGGATGTGTATGATGCCAATTCGATTTTGGGGGTTTATTGGAAATGTGGGAAGGTTGAGGATGCGGTTCAGATGTTTGAGAAAATGCCTGAGAGGGATTTGGTGTCTTGGAATACAATGATATCTGGGTTTTGCCATTCAGGGGATTATGTCAGCTCTTTCGGGATGTTTAGTCGGATGGTTCGGGATCATTGGGTGTTGCCTAATCGGGTGGCTTGCCTTTCAGCCCTCACTTCGTGCTCTTCGGTTCAGTCTTTGGTTCATGGCACAGAGATTCATGGCTTTGCTGTGAAGCGTTGGCTGGATGGTGATCAGTTTATGGTTAGTGGGTTGATTGATATGTACATGAAATGTGGGGATGTGAAGAATGCGGAATGTGTTTATAGGAGCGTTATTGGTGAAGCGTGTATTAGAGGAAATACAGTGATATGGAATGTGATGATTTCGGGCTATGTCTCTAACGGGTGTTGGCCGCAGGCTGTGGAGTTGTTTCTAGAGATGTTGGCGATTGGGTTGTTACCCGATACTTCCACAATGGTGGCCATTACAGGTTTGTGCTCTCAGCTAATGGATTTAGCATTCGGAAAGCAGATCCATAAATTCTGTTTGAGCACTCAATTGAACACTGATGTACGAGTTGAAACAGTTCTCATGGACATGTATTTCAAATGTGGTGATAGTACAACTGGTCTTGAAATCTTCAGAAGGTCCCTGAATCGTAACATGGTCATGTGGGGCGCTGCCATCTCAAATTTTGCTCAAAGTAGTCATCCTCGTGAGGCATTGAATCTGTTTCATGACTATATTTTAGAATATGGCTTTGTGGATTCTGTCATAATCTTGGCTGTTCTGCGGGCTTGTACATCCCTGGCTGTTAAGTCTATAGGGATGGAAATTCATGGACTACTAGCGAAATTGGGGTTTGATTCAGACCATTTTGTTGCCAGTGCATTAGTTGATTTTTATGCAAAAACCAGAGATATTGAGTCTGCTCAAAAAGTATTTCACAGACTACCAGCTAGAGATTTGGTGTCATGGAATGCCTTGATATCCGGATATACTCAGAATGAGTATCTAGATGAAGCTTTAAAGGCATTCCTTGACATGCAACTTGAAGAAATTAGACCTAATACTGTGACAGTTGCTACGGCAGGATTGGAACCTGATCGTGCAACTTTTACAGCTCTTCTTTCTGCTTGCAGCCATGCAGGGAGGATAGAAGAGGGGCTGAAGTATTTTCAGCGTATGGTAGAAGTTTACAAAATTGAGCCTCAACTTGAACAGTACACCTGCATGGTTGATCTTTTAGGCCGAGCTGGCCATCTAAAGCAAGCATATGATATTATTTCAACAATGCCTTGTGCCTCCGATGATCGTATATGGGGATCATTGCTTGGATCATGCAAAATTCATGGTGATGAAAGACTGGCAGAAGTTGTGGCTGATCATATCTTTAAACTGGATCCTACTAATATTGGCTACCGTACACTTCTTGCAAATTTGTACGAAGATTATGGGAAATGGAATGAAGTTACCAGGGTTAGATCAGACATCAAAGGTGTGGGGCTCAAGAAGAAACCTGGGTGTAGTTGGATTGAAGTTGATAACAATCTCCATACCTTTACTGCGGGTGATCATTCTCATAATAAGTCAGAGGAGATATATTTTACAATAGAAAATCTGACAACTGAAATTAGGAAGGCAGGATATATCCCTCAATTACTGACTGTGGGTGAGGCGCTTGATGAGGTTCTTGATGAAGATCTTACGTCATCTAGAGACAAGGGTTTGTTGTTTCTGGTTGCAAGTACAAACAATCACCAACAAGTTTCAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

779

Amino Acids

87.01

Weight (kDa)

6.02

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 202 - 230 1e-06 PPR repeat
PPR_2 PF13041 307 - 353 6.7e-08 PPR repeat family
PPR PF01535 309 - 338 2.5e-07 PPR repeat
PPR_2 PF13041 509 - 548 2.4e-08 PPR repeat family
PPR PF01535 511 - 538 3.9e-06 PPR repeat
E_motif PF20431 638 - 700 1.1e-15 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014735)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g05260
malus_domestica MD06G1174400.v1.1 MD06G1174600.v1.1
prunus_persica Prupe.5G174400_v2.0.a1 Prupe.5G174400_v2.0.a1 Prupe.5G174400_v2.0.a1
pyrus_communis pycom06g15570
rosa_chinensis RchiOBHm_Chr7g0193611
rosa_laevigata RLG00000004256
rosa_multiflora Rmu_sc0042944.1_g000002
rosa_roxburghii Rroxscaffold_3G00261960
rosa_rugosa Rorug07G0011000 Rorug07G0011100
rosa_samantha Rh7AG137600 Rh7BG137800 Rh7CG141400
rosa_wichuraiana Rw7G011720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1799
Acc36I ACCTGC 1 cut(s) 1799
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 21
AccIII TCCGGA 1 cut(s) 1553
AciI CCGC 6 cut(s) 21, 566, 872, 974, 1354, 2129
AclWI GGATC 6 cut(s) 696, 1087, 1894, 1906, 1958, 1971
AcoI YGGCCR 4 cut(s) 300, 971, 1041, 1819
AcsI RAATTY 8 cut(s) 32, 250, 401, 1100, 1252, 1395, 1908, 1999
AcuI CTGAAG 2 cut(s) 1186, 1751
AcyI GRCGYC 1 cut(s) 167
AdeI CACNNNGTG 1 cut(s) 738
AfaI GTAC 9 cut(s) 323, 845, 1134, 1183, 1363, 1787, 1987, 2006, 2311
AfiI CCNNNNNNNGG 3 cut(s) 261, 438, 643
AflIII ACRYGT 1 cut(s) 1158
AjnI CCWGG 3 cut(s) 1368, 2036, 2080
AleI CACNNNNGTG 1 cut(s) 1037
AloI GAACNNNNNNTCC 2 cut(s) 392, 424
AluBI AGCT 8 cut(s) 310, 395, 657, 1066, 1520, 1586, 1685, 1817
AluI AGCT 8 cut(s) 310, 395, 657, 1066, 1520, 1586, 1685, 1817
Alw21I GWGCWC 3 cut(s) 743, 1061, 1115
Alw26I GTCTC 3 cut(s) 85, 961, 2274
AlwI GGATC 6 cut(s) 696, 1087, 1894, 1906, 1958, 1971
Aor13HI TCCGGA 1 cut(s) 1553
AoxI GGCC 6 cut(s) 300, 429, 971, 1041, 1810, 1819
ApeKI GCWGC 3 cut(s) 77, 1241, 1701
ApoI RAATTY 8 cut(s) 32, 250, 401, 1100, 1252, 1395, 1908, 1999
Asp700I GAANNNNTTC 1 cut(s) 1146
AspA2I CCTAGG 1 cut(s) 226
AspLEI GCGC 2 cut(s) 1241, 2242
AspS9I GGNCC 1 cut(s) 1209
AsuC2I CCSGG 1 cut(s) 283
AsuHPI GGTGA 8 cut(s) 317, 821, 911, 1187, 1928, 2144, 2246, 2312
AvaII GGWCC 1 cut(s) 1209
AvrII CCTAGG 1 cut(s) 226
BalI TGGCCA 2 cut(s) 1043, 1821
BamHI GGATCC 1 cut(s) 1963
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 2070
BauI CACGAG 2 cut(s) 103, 1275
Bbv12I GWGCWC 3 cut(s) 743, 1061, 1115
BbvCI CCTCAGC 1 cut(s) 396
BbvI GCAGC 3 cut(s) 64, 1228, 1713
BccI CCATC 6 cut(s) 244, 673, 800, 1253, 1384, 1830
BceAI ACGGC 1 cut(s) 1665
BciT130I CCWGG 3 cut(s) 1370, 2038, 2082
BclI TGATCA 4 cut(s) 312, 811, 1945, 2134
BcnI CCSGG 1 cut(s) 283
BcoDI GTCTC 3 cut(s) 85, 961, 2274
BfaI CTAG 7 cut(s) 227, 462, 995, 1409, 1521, 1577, 2277
BfmI CTRYAG 2 cut(s) 390, 1383
BfoI RGCGCY 2 cut(s) 1242, 2243
BfuAI ACCTGC 1 cut(s) 1799
BglI GCCNNNNNGGC 1 cut(s) 1818
BglII AGATCT 1 cut(s) 2263
BisI GCNGC 4 cut(s) 78, 974, 1242, 1702
BlnI CCTAGG 1 cut(s) 226
BlsI GCNGC 4 cut(s) 79, 975, 1243, 1703
Bme1390I CCNGG 4 cut(s) 283, 1370, 2038, 2082
Bme18I GGWCC 1 cut(s) 1209
BmgT120I GGNCC 1 cut(s) 1209
BmiI GGNNCC 5 cut(s) 6, 126, 1211, 1662, 1965
BmrFI CCNGG 4 cut(s) 283, 1370, 2038, 2082
BmsI GCATC 3 cut(s) 337, 505, 553
Bpu10I CCTNAGC 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 2054
BpuMI CCSGG 1 cut(s) 283
BsaBI GATNNNNATC 3 cut(s) 810, 2109, 2262
BsaHI GRCGYC 1 cut(s) 167
BsaI GGTCTC 1 cut(s) 85
BsaJI CCNNGG 4 cut(s) 226, 1368, 2037, 2081
BsaWI WCCGGW 1 cut(s) 1553
Bsc4I CCNNNNNNNGG 3 cut(s) 261, 438, 643
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 4 cut(s) 1192, 1446, 1932, 1965
Bse3DI GCAATG 1 cut(s) 1889
Bse8I GATNNNNATC 3 cut(s) 810, 2109, 2262
BseAI TCCGGA 1 cut(s) 1553
BseBI CCWGG 3 cut(s) 1370, 2038, 2082
BseDI CCNNGG 4 cut(s) 226, 1368, 2037, 2081
BseJI GATNNNNATC 3 cut(s) 810, 2109, 2262
BseLI CCNNNNNNNGG 3 cut(s) 261, 438, 643
BseMI GCAATG 1 cut(s) 1889
BseMII CTCAG 5 cut(s) 189, 387, 582, 1076, 1577
BseNI ACTGG 4 cut(s) 1192, 1446, 1932, 1965
BseRI GAGGAG 1 cut(s) 2171
BseX3I CGGCCG 1 cut(s) 300
BseXI GCAGC 3 cut(s) 64, 1228, 1713
Bsh1236I CGCG 1 cut(s) 21
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 6 cut(s) 302, 431, 973, 1043, 1812, 1821
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 303
BsiHKAI GWGCWC 3 cut(s) 743, 1061, 1115
BsiSI CCGG 3 cut(s) 283, 303, 1554
BslFI GGGAC 1 cut(s) 1195
BslI CCNNNNNNNGG 3 cut(s) 261, 438, 643
BsmAI GTCTC 3 cut(s) 85, 961, 2274
BsmFI GGGAC 1 cut(s) 1195
BsmI GAATGC 4 cut(s) 874, 1079, 1546, 1595
BsnI GGCC 6 cut(s) 302, 431, 973, 1043, 1812, 1821
Bso31I GGTCTC 1 cut(s) 85
Bsp1286I GDGCHC 4 cut(s) 743, 1061, 1115, 2070
Bsp13I TCCGGA 1 cut(s) 1553
Bsp1407I TGTACA 2 cut(s) 843, 1361
BspACI CCGC 6 cut(s) 21, 566, 872, 974, 1354, 2129
BspANI GGCC 6 cut(s) 302, 431, 973, 1043, 1812, 1821
BspCNI CTCAG 5 cut(s) 188, 388, 583, 1075, 1576
BspEI TCCGGA 1 cut(s) 1553
BspFNI CGCG 1 cut(s) 21
BspHI TCATGA 1 cut(s) 1297
BspLI GGNNCC 5 cut(s) 6, 126, 1211, 1662, 1965
BspMI ACCTGC 1 cut(s) 1799
BspPI GGATC 6 cut(s) 696, 1087, 1894, 1906, 1958, 1971
BspQI GCTCTTC 2 cut(s) 748, 1692
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 85
BsrDI GCAATG 1 cut(s) 1889
BsrFI RCCGGY 1 cut(s) 302
BsrGI TGTACA 2 cut(s) 843, 1361
BsrI ACTGG 4 cut(s) 1192, 1446, 1932, 1965
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 4 cut(s) 226, 1368, 2037, 2081
BssNI GRCGYC 1 cut(s) 167
BssSI CACGAG 2 cut(s) 103, 1275
BssT1I CCWWGG 1 cut(s) 226
Bst2BI CACGAG 2 cut(s) 103, 1275
Bst2UI CCWGG 3 cut(s) 1370, 2038, 2082
Bst4CI ACNGT 9 cut(s) 120, 222, 925, 1147, 1636, 1642, 1785, 1985, 2230
Bst6I CTCTTC 3 cut(s) 748, 1692, 1716
BstACI GRCGYC 1 cut(s) 167
BstAUI TGTACA 2 cut(s) 843, 1361
BstC8I GCNNGC 6 cut(s) 718, 978, 1356, 1699, 1819, 1833
BstDEI CTNAG 6 cut(s) 113, 175, 396, 591, 1062, 1563
BstFNI CGCG 1 cut(s) 21
BstH2I RGCGCY 2 cut(s) 1242, 2243
BstHHI GCGC 2 cut(s) 1241, 2242
BstMAI GTCTC 3 cut(s) 85, 961, 2274
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 2 cut(s) 1592, 1818
BstNI CCWGG 3 cut(s) 1370, 2038, 2082
BstNSI RCATGY 3 cut(s) 482, 1162, 1609
BstSCI CCNGG 4 cut(s) 281, 1368, 2036, 2080
BstSFI CTRYAG 2 cut(s) 390, 1383
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 3 cut(s) 64, 1228, 1713
BstX2I RGATCY 3 cut(s) 1092, 1963, 2263
BstXI CCANNNNNNTGG 1 cut(s) 1039
BstYI RGATCY 3 cut(s) 1092, 1963, 2263
BstZI CGGCCG 1 cut(s) 300
BsuRI GGCC 6 cut(s) 302, 431, 973, 1043, 1812, 1821
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 4 cut(s) 133, 930, 1125, 1453
BveI ACCTGC 1 cut(s) 1799
Cac8I GCNNGC 6 cut(s) 718, 978, 1356, 1699, 1819, 1833
CciI TCATGA 1 cut(s) 1297
CfoI GCGC 2 cut(s) 1241, 2242
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 1 cut(s) 1209
CseI GACGC 1 cut(s) 175
Csp6I GTAC 9 cut(s) 322, 844, 1133, 1182, 1362, 1786, 1986, 2005, 2310
CviQI GTAC 9 cut(s) 322, 844, 1133, 1182, 1362, 1786, 1986, 2005, 2310
DdeI CTNAG 6 cut(s) 113, 175, 396, 591, 1062, 1563
DraI TTTAAA 2 cut(s) 1590, 1957
DraIII CACNNNGTG 1 cut(s) 738
EaeI YGGCCR 4 cut(s) 300, 971, 1041, 1819
EagI CGGCCG 1 cut(s) 300
Eam1104I CTCTTC 3 cut(s) 748, 1692, 1716
EarI CTCTTC 3 cut(s) 748, 1692, 1716
EclXI CGGCCG 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 226
Eco147I AGGCCT 1 cut(s) 431
Eco24I GRGCYC 1 cut(s) 2070
Eco31I GGTCTC 1 cut(s) 85
Eco32I GATATC 2 cut(s) 624, 1551
Eco47I GGWCC 1 cut(s) 1209
Eco52I CGGCCG 1 cut(s) 300
Eco57I CTGAAG 2 cut(s) 1186, 1751
EcoO109I RGGNCCY 1 cut(s) 1209
EcoRI GAATTC 2 cut(s) 32, 250
EcoRII CCWGG 3 cut(s) 1368, 2036, 2080
EcoRV GATATC 2 cut(s) 624, 1551
EcoT14I CCWWGG 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 2070
ErhI CCWWGG 1 cut(s) 226
FaqI GGGAC 1 cut(s) 1195
FauI CCCGC 3 cut(s) 14, 1347, 2122
FauNDI CATATG 1 cut(s) 1837
FbaI TGATCA 4 cut(s) 312, 811, 1945, 2134
Fnu4HI GCNGC 4 cut(s) 78, 974, 1242, 1702
FriOI GRGCYC 1 cut(s) 2070
Fsp4HI GCNGC 4 cut(s) 78, 974, 1242, 1702
FspBI CTAG 7 cut(s) 227, 462, 995, 1409, 1521, 1577, 2277
GlaI GCGC 2 cut(s) 1240, 2241
GluI GCNGC 4 cut(s) 78, 974, 1242, 1702
HaeII RGCGCY 2 cut(s) 1242, 2243
HaeIII GGCC 6 cut(s) 302, 431, 973, 1043, 1812, 1821
HapII CCGG 3 cut(s) 283, 303, 1554
HgaI GACGC 1 cut(s) 175
HhaI GCGC 2 cut(s) 1241, 2242
Hin1I GRCGYC 1 cut(s) 167
Hin6I GCGC 2 cut(s) 1239, 2240
HinP1I GCGC 2 cut(s) 1239, 2240
HindIII AAGCTT 1 cut(s) 1584
HinfI GANTC 7 cut(s) 469, 775, 1216, 1288, 1328, 1427, 1487
HpaII CCGG 3 cut(s) 283, 303, 1554
HphI GGTGA 8 cut(s) 317, 821, 911, 1187, 1928, 2144, 2246, 2312
Hpy166II GTNNAC 3 cut(s) 1759, 1788, 1988
Hpy8I GTNNAC 3 cut(s) 1759, 1788, 1988
Hpy99I CGWCG 2 cut(s) 124, 169
HpyAV CCTTC 3 cut(s) 547, 1200, 2194
HpyCH4III ACNGT 9 cut(s) 120, 222, 925, 1147, 1636, 1642, 1785, 1985, 2230
HpyCH4IV ACGT 2 cut(s) 324, 2270
HpyF10VI GCNNNNNNNGC 2 cut(s) 1592, 1818
HpyF3I CTNAG 6 cut(s) 113, 175, 396, 591, 1062, 1563
HpySE526I ACGT 2 cut(s) 324, 2270
Hsp92I GRCGYC 1 cut(s) 167
HspAI GCGC 2 cut(s) 1239, 2240
Kpn2I TCCGGA 1 cut(s) 1553
Ksp22I TGATCA 4 cut(s) 312, 811, 1945, 2134
LguI GCTCTTC 2 cut(s) 748, 1692
LmnI GCTCC 2 cut(s) 124, 888
Lsp1109I GCAGC 3 cut(s) 64, 1228, 1713
LweI GCATC 3 cut(s) 337, 505, 553
MaeI CTAG 7 cut(s) 227, 462, 995, 1409, 1521, 1577, 2277
MaeII ACGT 2 cut(s) 324, 2270
MaeIII GTNAC 4 cut(s) 1017, 1220, 1636, 2032
MboII GAAGA 9 cut(s) 735, 877, 1192, 1628, 1679, 1733, 2021, 2086, 2273
MfeI CAATTG 1 cut(s) 1118
MflI RGATCY 3 cut(s) 1092, 1963, 2263
MhlI GDGCHC 4 cut(s) 743, 1061, 1115, 2070
MlsI TGGCCA 2 cut(s) 1043, 1821
MluNI TGGCCA 2 cut(s) 1043, 1821
MlyI GAGTC 1 cut(s) 1496
MmeI TCCRAC 3 cut(s) 102, 656, 2072
Mox20I TGGCCA 2 cut(s) 1043, 1821
MroI TCCGGA 1 cut(s) 1553
MroXI GAANNNNTTC 1 cut(s) 1146
MscI TGGCCA 2 cut(s) 1043, 1821
MseI TTAA 5 cut(s) 366, 426, 1377, 1589, 1956
MslI CAYNNNNRTG 7 cut(s) 477, 1037, 1157, 1229, 1275, 1793, 1917
Msp20I TGGCCA 2 cut(s) 1043, 1821
MspI CCGG 3 cut(s) 283, 303, 1554
MspR9I CCNGG 4 cut(s) 283, 1370, 2038, 2082
MunI CAATTG 1 cut(s) 1118
Mva1269I GAATGC 4 cut(s) 874, 1079, 1546, 1595
MvaI CCWGG 3 cut(s) 1370, 2038, 2082
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 2 cut(s) 1592, 1818
NciI CCSGG 1 cut(s) 283
NdeI CATATG 1 cut(s) 1837
NlaIV GGNNCC 5 cut(s) 6, 126, 1211, 1662, 1965
NmeAIII GCCGAG 1 cut(s) 1838
NmuCI GTSAC 1 cut(s) 1636
NspI RCATGY 3 cut(s) 482, 1162, 1609
OliI CACNNNNGTG 1 cut(s) 1037
PagI TCATGA 1 cut(s) 1297
PaqCI CACCTGC 1 cut(s) 1799
PceI AGGCCT 1 cut(s) 431
PciI ACATGT 1 cut(s) 1158
PciSI GCTCTTC 2 cut(s) 748, 1692
PcsI WCGNNNNNNNCGW 1 cut(s) 116
PctI GAATGC 4 cut(s) 874, 1079, 1546, 1595
PdmI GAANNNNTTC 1 cut(s) 1146
PfeI GAWTC 6 cut(s) 469, 775, 1216, 1288, 1328, 1427
PfoI TCCNGGA 1 cut(s) 281
PkrI GCNGC 4 cut(s) 79, 975, 1243, 1703
PleI GAGTC 1 cut(s) 1495
PpsI GAGTC 1 cut(s) 1495
PpuMI RGGWCCY 1 cut(s) 1209
PscI ACATGT 1 cut(s) 1158
Psp5II RGGWCCY 1 cut(s) 1209
Psp6I CCWGG 3 cut(s) 1368, 2036, 2080
PspGI CCWGG 3 cut(s) 1368, 2036, 2080
PspN4I GGNNCC 5 cut(s) 6, 126, 1211, 1662, 1965
PspPI GGNCC 1 cut(s) 1209
PspPPI RGGWCCY 1 cut(s) 1209
PsuI RGATCY 3 cut(s) 1092, 1963, 2263
RsaI GTAC 9 cut(s) 323, 845, 1134, 1183, 1363, 1787, 1987, 2006, 2311
RsaNI GTAC 9 cut(s) 322, 844, 1133, 1182, 1362, 1786, 1986, 2005, 2310
RseI CAYNNNNRTG 7 cut(s) 477, 1037, 1157, 1229, 1275, 1793, 1917
SapI GCTCTTC 2 cut(s) 748, 1692
SaqAI TTAA 5 cut(s) 366, 426, 1377, 1589, 1956
SatI GCNGC 4 cut(s) 78, 974, 1242, 1702
Sau96I GGNCC 1 cut(s) 1209
SchI GAGTC 1 cut(s) 1496
ScrFI CCNGG 4 cut(s) 283, 1370, 2038, 2082
SduI GDGCHC 4 cut(s) 743, 1061, 1115, 2070
SfaNI GCATC 3 cut(s) 337, 505, 553
SfcI CTRYAG 2 cut(s) 390, 1383
SfiI GGCCNNNNNGGCC 1 cut(s) 1818
SinI GGWCC 1 cut(s) 1209
SmiMI CAYNNNNRTG 7 cut(s) 477, 1037, 1157, 1229, 1275, 1793, 1917
SmlI CTYRAG 1 cut(s) 2069
SmoI CTYRAG 1 cut(s) 2069
SseBI AGGCCT 1 cut(s) 431
SsiI CCGC 6 cut(s) 21, 566, 872, 974, 1354, 2129
SspI AATATT 1 cut(s) 1975
SspMI CTAG 7 cut(s) 227, 462, 995, 1409, 1521, 1577, 2277
StuI AGGCCT 1 cut(s) 431
StyD4I CCNGG 4 cut(s) 281, 1368, 2036, 2080
StyI CCWWGG 1 cut(s) 226
TaaI ACNGT 9 cut(s) 120, 222, 925, 1147, 1636, 1642, 1785, 1985, 2230
TaiI ACGT 2 cut(s) 327, 2273
TaqI TCGA 3 cut(s) 248, 269, 524
TatI WGTACW 5 cut(s) 843, 1181, 1361, 1785, 2309
TauI GCSGC 1 cut(s) 976
TfiI GAWTC 6 cut(s) 469, 775, 1216, 1288, 1328, 1427
Tru1I TTAA 5 cut(s) 366, 426, 1377, 1589, 1956
Tru9I TTAA 5 cut(s) 366, 426, 1377, 1589, 1956
TscAI CASTG 4 cut(s) 140, 930, 1132, 1453
TseFI GTSAC 1 cut(s) 1636
TseI GCWGC 3 cut(s) 77, 1241, 1701
Tsp45I GTSAC 1 cut(s) 1636
TspRI CASTG 4 cut(s) 140, 930, 1132, 1453
VpaK11BI GGWCC 1 cut(s) 1209
XapI RAATTY 8 cut(s) 32, 250, 401, 1100, 1252, 1395, 1908, 1999
XbaI TCTAGA 3 cut(s) 994, 1576, 2276
XceI RCATGY 3 cut(s) 482, 1162, 1609
XcmI CCANNNNNNNNNTGG 1 cut(s) 526
XmaJI CCTAGG 1 cut(s) 226
XmnI GAANNNNTTC 1 cut(s) 1146
XspI CTAG 7 cut(s) 227, 462, 995, 1409, 1521, 1577, 2277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.