RLG00000004256

DYW family of nucleic acid deaminases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0014735
Physical Location & Seq
Reverse (-)
57761385 .. 57763919
2535 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004256

Sequence Viewer

Length: 2535 bp
ATGGGTGCCGTGAGAGTGAGACCACAAGGCTCGTGTTCGCTAAGACCATCGGAGCCATTACACTGCTACAAGTTCAGAGGTGGTGCTACAACGACGCCTTGCTCAGTTTCTTTTGCTTCAAAGTTTCAATCTTTATGTTGCAAATCACAGTTCCTGGGAAACCCATCTCGGAAATCGAATTCCAGAGGTGGGTTTTCGAGGAATTGTTCCCGGATTGATGTTGGTTCGGCCGGTGAGCTGATCAAGAGGTACGTTGAGAATGGGAATTGCGAGGATGCGATAGTGGTTTATGTTAAAATGCTTGAACTTGGTTTGCCTGTCGCTGAGGAATTTCAGTTCTTTCCGATTTTGATTAAGGCCTTTGGGGGGTTCTGTGATGTGGGCAAGGCTAGGGAGATTCATGGGCATGTGTTGAAATTGGGGGTTTTGGGGGATGTGTATGATGCCAATTCGATTTTGGGGGTTTATTGGAAATGTGGGAAGGTTGAGGATGCCGTTCAGATGTTTGAGAAAATGCCTGAGAGGGATTTGGTGTCTTGGAATACAATGATATCTGGGTTTTGCCATTCAGGGGATTATGTGAGCTCGTTGGGGATGTTTAGTCGGATGGTTCGGGATCATTGGGTGTTGCCTAATCGGGTGGCTTGCCTTTCGGCTCTCACTTCGTGCTCTTCGGTTCAGTCTTTGGTTCATGGCAGAGAGATTCATGGCTTTGCTGTGAAGCGTTGGCTGCATGGTGATCAGTTTATGGTTAGTGGGTTGATTGATATGTACATGAAATGTGGGGATGTGAAGAATGCGGAATGTGTTTATAGGAGCGTTATTGGTGAAGCGTGTATTAGAGGAAATACAGTGATATGGAATGTGATGATTTCGGGCTATGTCTCTAACGGGTGTTGGCCGCAGGCGGTGGAGTTGTTTCTAGAGATGTTGGCGATTGGGTTGTTACCCGATACTTCCACAATGGTGGCCATTACAGGTTTGTGCTCTCAGCTAATGGATTTAGCATTTGGAAAGCAGATCCATAAATTCTGTTTGAGCACTCAATTGAACACTGACGTCCGAGTTGAAACAGCTCTTATGGACATGTATTTCAAATGCGGTGATAATACAACTGGTCTTGAAATCTTCAGAAGGTCCCTGAATCGTAACATGGTCATGTGGGGCGCCGCCATCTCAAATTTTGCTCAAAGTAGTCATCCTCGTGAGGCATTGAATCTGTTTCATGACTATATTTTAGAATATGGCTTTGTGGATTCTGTCATAATCTTGGCTGTTCTGCGGGCTTGTTCATCCCTGGCTGTTAAGTCTATAGGGATGGAAATTCATGGGCTACTAGTGAAATTGGGGTTTGATTCAGACCATTTTGTTGCCAGTGCCTTAGTTGATTTTTATGCTAAAACCAGAGATATTGAGTCTGCTCAAAAAGTATTTCATAGACTACCAGCTAGAGATTTGGTATCATGGAATGCCTTGATATCCGGATATACTCAGAATGAGTATCTAGATGAAGCTTTAAAGGCATTCCTTGACATGCAACTTGAAGAAATTAGACCTAATACTGTGACAGTTGCTAGTATTCTGTCAGTTTGTGCTCAGTTGTCAATCATGATGTTGTGTAAGGAGGTTCATGGTTACCTATTACGGCAAGAATTTGAGTCCAATGTTCTTGTGAGCAATTCCCTGATGACTACCTATGCAAAATGTGGAGACATAAAGAGCTCAAGGAGTGTGTTTGTGAAAATGCCTGAAAGAAATTTAGTTTCATGGAACTCAATTCTTCTGGGGTTAGGAATGCATGGCCATGCAGACGAGACATTTACTTTATTTGAAAAAATGGAAGCGGCAGGATTGGAGCCTGATCATGCAACTTTTACAGCTCTTCTTTCTGCATGCAGTCATGCAGGGAGGATGGAAGAGGGGCTGAAGTATTTTCAGCGTATGGTAGAAGTTTACAAAATTGAGCCTCAACTTGAACAGTACACCTGCATGGTTGATCTTTTAGGCCGAGCTGGCCATCTAAAGCAAGCATATGATATTATTTCAACAATGCCTTGTGCCTCTGATGATTGTATATGGGGATCATTGCTTGGATCATGCAAAATTCATGGTGATGAAAGACTGGCAGAAGTTGTGGCTGATCATATCTTTAAACTGGATCCTACTAATATTGGCTACCGTACACTTCTTGCAAATTTGTATGAAGATTATGGGAAATGGAATGAAGTTACCAGGGTTAGATCAGACATCAAAGGAGTGGGACTCAAGAAGACGCCTGGGTGTAGTTGGATTGAAGTTGATAACAATCTCCATACCTTTACTGCGGGTGATCATTCTCATAATGAGTCAGAGGAGATATATTTTACAATAGAAAATCTGACAACTGAAATTAGGAAGGCAGGATATATCCCTCAATTACGGACTGTGGGTGAGGGGCTTGATGAGGTTCTTGATGAAGATCTTACGTCATCTAGAGACAAGGGTTTGTTGTTTCTGGTTGCAAGTACAAACAATCACCAACAAGTTTCAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

845

Amino Acids

94.02

Weight (kDa)

5.92

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 178 - 206 9e-07 PPR repeat
PPR_2 PF13041 283 - 329 7.4e-08 PPR repeat family
PPR PF01535 285 - 314 2.8e-07 PPR repeat
PPR_2 PF13041 485 - 532 1.2e-09 PPR repeat family
PPR PF01535 487 - 514 4.2e-06 PPR repeat
PPR_2 PF13041 586 - 633 2.4e-10 PPR repeat family
PPR_long PF17177 602 - 684 3.2e-07 Pentacotripeptide-repeat region of PRORP
E_motif PF20431 703 - 765 2.2e-15 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014735)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g05260
malus_domestica MD06G1174400.v1.1 MD06G1174600.v1.1
prunus_persica Prupe.5G174400_v2.0.a1 Prupe.5G174400_v2.0.a1 Prupe.5G174400_v2.0.a1
pyrus_communis pycom06g15570
rosa_chinensis RchiOBHm_Chr7g0193611
rosa_laevigata RLG00000004256
rosa_multiflora Rmu_sc0042944.1_g000002
rosa_roxburghii Rroxscaffold_3G00261960
rosa_rugosa Rorug07G0011000 Rorug07G0011100
rosa_samantha Rh7AG137600 Rh7BG137800 Rh7CG141400
rosa_wichuraiana Rw7G011720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1994
AatII GACGTC 1 cut(s) 1062
Acc36I ACCTGC 1 cut(s) 1994
AccB1I GGYRCC 2 cut(s) 5, 1166
AccIII TCCGGA 1 cut(s) 1481
AciI CCGC 8 cut(s) 800, 902, 908, 1101, 1170, 1282, 1844, 2324
AclWI GGATC 6 cut(s) 624, 1015, 2089, 2101, 2153, 2166
AcoI YGGCCR 5 cut(s) 228, 899, 969, 1801, 2014
AcsI RAATTY 9 cut(s) 178, 329, 1028, 1180, 1323, 1652, 1756, 2103, 2194
AcuI CTGAAG 2 cut(s) 1114, 1946
AcyI GRCGYC 4 cut(s) 95, 1059, 1167, 2273
AdeI CACNNNGTG 1 cut(s) 666
AfaI GTAC 5 cut(s) 251, 773, 1982, 2182, 2506
AfiI CCNNNNNNNGG 3 cut(s) 189, 366, 571
AflIII ACRYGT 1 cut(s) 1086
AhlI ACTAGT 1 cut(s) 1336
AjnI CCWGG 4 cut(s) 153, 1296, 2231, 2275
AleI CACNNNNGTG 1 cut(s) 965
AloI GAACNNNNNNTCC 2 cut(s) 320, 352
AluBI AGCT 9 cut(s) 238, 585, 994, 1076, 1448, 1514, 1722, 1880, 2012
AluI AGCT 9 cut(s) 238, 585, 994, 1076, 1448, 1514, 1722, 1880, 2012
Alw21I GWGCWC 6 cut(s) 587, 671, 989, 1043, 1597, 1724
Alw26I GTCTC 5 cut(s) 13, 889, 1704, 1808, 2469
AlwI GGATC 6 cut(s) 624, 1015, 2089, 2101, 2153, 2166
AlwNI CAGNNNCTG 1 cut(s) 154
Aor13HI TCCGGA 1 cut(s) 1481
AoxI GGCC 7 cut(s) 228, 357, 899, 969, 1801, 2005, 2014
ApeKI GCWGC 1 cut(s) 730
ApoI RAATTY 9 cut(s) 178, 329, 1028, 1180, 1323, 1652, 1756, 2103, 2194
AspLEI GCGC 1 cut(s) 1169
AspS9I GGNCC 1 cut(s) 1137
AsuC2I CCSGG 1 cut(s) 211
AsuHPI GGTGA 8 cut(s) 245, 749, 839, 1115, 2123, 2339, 2441, 2507
AvaII GGWCC 1 cut(s) 1137
BalI TGGCCA 3 cut(s) 971, 1803, 2016
BamHI GGATCC 1 cut(s) 2158
BanI GGYRCC 2 cut(s) 5, 1166
BanII GRGCYC 2 cut(s) 587, 1724
BauI CACGAG 2 cut(s) 31, 1203
BbsI GAAGAC 1 cut(s) 2276
Bbv12I GWGCWC 6 cut(s) 587, 671, 989, 1043, 1597, 1724
BbvCI CCTCAGC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 717
BccI CCATC 7 cut(s) 55, 172, 601, 1181, 1312, 1906, 2025
BceAI ACGGC 2 cut(s) 479, 1661
BciT130I CCWGG 4 cut(s) 155, 1298, 2233, 2277
BclI TGATCA 5 cut(s) 240, 739, 1861, 2140, 2329
BcnI CCSGG 1 cut(s) 211
BcoDI GTCTC 5 cut(s) 13, 889, 1704, 1808, 2469
BcuI ACTAGT 1 cut(s) 1336
BfaI CTAG 7 cut(s) 390, 923, 1337, 1449, 1505, 1575, 2472
BfmI CTRYAG 1 cut(s) 1311
BfoI RGCGCY 1 cut(s) 1170
BfuAI ACCTGC 1 cut(s) 1994
BglI GCCNNNNNGGC 1 cut(s) 2013
BglII AGATCT 1 cut(s) 2458
BisI GCNGC 4 cut(s) 731, 902, 1170, 1845
BlsI GCNGC 4 cut(s) 732, 903, 1171, 1846
Bme1390I CCNGG 5 cut(s) 155, 211, 1298, 2233, 2277
Bme18I GGWCC 1 cut(s) 1137
BmgT120I GGNCC 1 cut(s) 1137
BmiI GGNNCC 6 cut(s) 7, 54, 1139, 1168, 1857, 2160
BmrFI CCNGG 5 cut(s) 155, 211, 1298, 2233, 2277
BmsI GCATC 3 cut(s) 265, 433, 481
BpiI GAAGAC 1 cut(s) 2276
BplI GAGNNNNNCTC 2 cut(s) 2247, 2279
Bpu10I CCTNAGC 1 cut(s) 324
BpuEI CTTGAG 2 cut(s) 1708, 2249
BpuMI CCSGG 1 cut(s) 211
BsaBI GATNNNNATC 2 cut(s) 2304, 2457
BsaHI GRCGYC 4 cut(s) 95, 1059, 1167, 2273
BsaI GGTCTC 1 cut(s) 13
BsaJI CCNNGG 4 cut(s) 154, 1296, 2232, 2276
BsaWI WCCGGW 1 cut(s) 1481
Bsc4I CCNNNNNNNGG 3 cut(s) 189, 366, 571
Bse118I RCCGGY 1 cut(s) 230
Bse1I ACTGG 4 cut(s) 1120, 1374, 2127, 2160
Bse3DI GCAATG 1 cut(s) 2084
Bse8I GATNNNNATC 2 cut(s) 2304, 2457
BseAI TCCGGA 1 cut(s) 1481
BseBI CCWGG 4 cut(s) 155, 1298, 2233, 2277
BseDI CCNNGG 4 cut(s) 154, 1296, 2232, 2276
BseJI GATNNNNATC 2 cut(s) 2304, 2457
BseLI CCNNNNNNNGG 3 cut(s) 189, 366, 571
BseMI GCAATG 1 cut(s) 2084
BseMII CTCAG 6 cut(s) 117, 315, 510, 1004, 1505, 1610
BseNI ACTGG 4 cut(s) 1120, 1374, 2127, 2160
BseRI GAGGAG 1 cut(s) 2366
BseX3I CGGCCG 1 cut(s) 228
BseXI GCAGC 1 cut(s) 717
Bsh1285I CGRYCG 1 cut(s) 231
BshFI GGCC 7 cut(s) 230, 359, 901, 971, 1803, 2007, 2016
BshNI GGYRCC 2 cut(s) 5, 1166
BsiEI CGRYCG 1 cut(s) 231
BsiHKAI GWGCWC 6 cut(s) 587, 671, 989, 1043, 1597, 1724
BsiSI CCGG 3 cut(s) 211, 231, 1482
BslFI GGGAC 2 cut(s) 1123, 2274
BslI CCNNNNNNNGG 3 cut(s) 189, 366, 571
BsmAI GTCTC 5 cut(s) 13, 889, 1704, 1808, 2469
BsmFI GGGAC 2 cut(s) 1123, 2274
BsmI GAATGC 4 cut(s) 802, 1474, 1523, 1800
BsnI GGCC 7 cut(s) 230, 359, 901, 971, 1803, 2007, 2016
Bso31I GGTCTC 1 cut(s) 13
Bsp1286I GDGCHC 6 cut(s) 587, 671, 989, 1043, 1597, 1724
Bsp13I TCCGGA 1 cut(s) 1481
Bsp1407I TGTACA 1 cut(s) 771
BspACI CCGC 8 cut(s) 800, 902, 908, 1101, 1170, 1282, 1844, 2324
BspANI GGCC 7 cut(s) 230, 359, 901, 971, 1803, 2007, 2016
BspCNI CTCAG 6 cut(s) 116, 316, 511, 1003, 1504, 1609
BspEI TCCGGA 1 cut(s) 1481
BspHI TCATGA 2 cut(s) 1225, 1608
BspLI GGNNCC 6 cut(s) 7, 54, 1139, 1168, 1857, 2160
BspMI ACCTGC 1 cut(s) 1994
BspPI GGATC 6 cut(s) 624, 1015, 2089, 2101, 2153, 2166
BspQI GCTCTTC 2 cut(s) 676, 1887
BspT107I GGYRCC 2 cut(s) 5, 1166
BspTNI GGTCTC 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 2084
BsrFI RCCGGY 1 cut(s) 230
BsrGI TGTACA 1 cut(s) 771
BsrI ACTGG 4 cut(s) 1120, 1374, 2127, 2160
BssAI RCCGGY 1 cut(s) 230
BssECI CCNNGG 4 cut(s) 154, 1296, 2232, 2276
BssNI GRCGYC 4 cut(s) 95, 1059, 1167, 2273
BssSI CACGAG 2 cut(s) 31, 1203
Bst2BI CACGAG 2 cut(s) 31, 1203
Bst2UI CCWGG 4 cut(s) 155, 1298, 2233, 2277
Bst4CI ACNGT 7 cut(s) 150, 853, 1564, 1570, 1980, 2180, 2425
Bst6I CTCTTC 3 cut(s) 676, 1887, 1911
BstACI GRCGYC 4 cut(s) 95, 1059, 1167, 2273
BstAUI TGTACA 1 cut(s) 771
BstC8I GCNNGC 6 cut(s) 646, 906, 1284, 1894, 2014, 2028
BstDEI CTNAG 8 cut(s) 41, 103, 324, 519, 990, 1381, 1491, 1596
BstEII GGTNACC 1 cut(s) 1634
BstH2I RGCGCY 1 cut(s) 1170
BstHHI GCGC 1 cut(s) 1169
BstMAI GTCTC 5 cut(s) 13, 889, 1704, 1808, 2469
BstMCI CGRYCG 1 cut(s) 231
BstMWI GCNNNNNNNGC 3 cut(s) 730, 1520, 2013
BstNI CCWGG 4 cut(s) 155, 1298, 2233, 2277
BstNSI RCATGY 4 cut(s) 410, 1090, 1537, 1896
BstPI GGTNACC 1 cut(s) 1634
BstSCI CCNGG 5 cut(s) 153, 209, 1296, 2231, 2275
BstSFI CTRYAG 1 cut(s) 1311
BstV1I GCAGC 1 cut(s) 717
BstV2I GAAGAC 1 cut(s) 2276
BstX2I RGATCY 3 cut(s) 1020, 2158, 2458
BstXI CCANNNNNNTGG 1 cut(s) 967
BstYI RGATCY 3 cut(s) 1020, 2158, 2458
BstZI CGGCCG 1 cut(s) 228
BsuRI GGCC 7 cut(s) 230, 359, 901, 971, 1803, 2007, 2016
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 4 cut(s) 61, 858, 1053, 1381
BveI ACCTGC 1 cut(s) 1994
Cac8I GCNNGC 6 cut(s) 646, 906, 1284, 1894, 2014, 2028
CaiI CAGNNNCTG 1 cut(s) 154
CciI TCATGA 2 cut(s) 1225, 1608
CfoI GCGC 1 cut(s) 1169
Cfr10I RCCGGY 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 1137
CseI GACGC 2 cut(s) 103, 2281
Csp6I GTAC 5 cut(s) 250, 772, 1981, 2181, 2505
CviQI GTAC 5 cut(s) 250, 772, 1981, 2181, 2505
DdeI CTNAG 8 cut(s) 41, 103, 324, 519, 990, 1381, 1491, 1596
DinI GGCGCC 1 cut(s) 1168
DraI TTTAAA 2 cut(s) 1518, 2152
DraIII CACNNNGTG 1 cut(s) 666
EaeI YGGCCR 5 cut(s) 228, 899, 969, 1801, 2014
EagI CGGCCG 1 cut(s) 228
Eam1104I CTCTTC 3 cut(s) 676, 1887, 1911
EarI CTCTTC 3 cut(s) 676, 1887, 1911
Ecl136II GAGCTC 2 cut(s) 585, 1722
EclXI CGGCCG 1 cut(s) 228
Eco147I AGGCCT 1 cut(s) 359
Eco24I GRGCYC 2 cut(s) 587, 1724
Eco31I GGTCTC 1 cut(s) 13
Eco32I GATATC 2 cut(s) 552, 1479
Eco47I GGWCC 1 cut(s) 1137
Eco52I CGGCCG 1 cut(s) 228
Eco53kI GAGCTC 2 cut(s) 585, 1722
Eco57I CTGAAG 2 cut(s) 1114, 1946
Eco91I GGTNACC 1 cut(s) 1634
EcoICRI GAGCTC 2 cut(s) 585, 1722
EcoO109I RGGNCCY 1 cut(s) 1137
EcoO65I GGTNACC 1 cut(s) 1634
EcoRI GAATTC 1 cut(s) 178
EcoRII CCWGG 4 cut(s) 153, 1296, 2231, 2275
EcoRV GATATC 2 cut(s) 552, 1479
EcoT22I ATGCAT 1 cut(s) 1800
EcoT38I GRGCYC 2 cut(s) 587, 1724
EgeI GGCGCC 1 cut(s) 1168
EheI GGCGCC 1 cut(s) 1168
FaqI GGGAC 2 cut(s) 1123, 2274
FauI CCCGC 2 cut(s) 1275, 2317
FauNDI CATATG 1 cut(s) 2032
FbaI TGATCA 5 cut(s) 240, 739, 1861, 2140, 2329
Fnu4HI GCNGC 4 cut(s) 731, 902, 1170, 1845
FriOI GRGCYC 2 cut(s) 587, 1724
Fsp4HI GCNGC 4 cut(s) 731, 902, 1170, 1845
FspBI CTAG 7 cut(s) 390, 923, 1337, 1449, 1505, 1575, 2472
GlaI GCGC 1 cut(s) 1168
GluI GCNGC 4 cut(s) 731, 902, 1170, 1845
HaeII RGCGCY 1 cut(s) 1170
HaeIII GGCC 7 cut(s) 230, 359, 901, 971, 1803, 2007, 2016
HapII CCGG 3 cut(s) 211, 231, 1482
HgaI GACGC 2 cut(s) 103, 2281
HhaI GCGC 1 cut(s) 1169
Hin1I GRCGYC 4 cut(s) 95, 1059, 1167, 2273
Hin6I GCGC 1 cut(s) 1167
HinP1I GCGC 1 cut(s) 1167
HindIII AAGCTT 1 cut(s) 1512
HpaII CCGG 3 cut(s) 211, 231, 1482
HphI GGTGA 8 cut(s) 245, 749, 839, 1115, 2123, 2339, 2441, 2507
Hpy166II GTNNAC 3 cut(s) 1954, 1983, 2183
Hpy8I GTNNAC 3 cut(s) 1954, 1983, 2183
Hpy99I CGWCG 1 cut(s) 97
HpyAV CCTTC 3 cut(s) 475, 1128, 2389
HpyCH4III ACNGT 7 cut(s) 150, 853, 1564, 1570, 1980, 2180, 2425
HpyCH4IV ACGT 3 cut(s) 252, 1059, 2465
HpyF10VI GCNNNNNNNGC 3 cut(s) 730, 1520, 2013
HpyF3I CTNAG 8 cut(s) 41, 103, 324, 519, 990, 1381, 1491, 1596
HpySE526I ACGT 3 cut(s) 252, 1059, 2465
Hsp92I GRCGYC 4 cut(s) 95, 1059, 1167, 2273
HspAI GCGC 1 cut(s) 1167
KasI GGCGCC 1 cut(s) 1166
Kpn2I TCCGGA 1 cut(s) 1481
Ksp22I TGATCA 5 cut(s) 240, 739, 1861, 2140, 2329
LguI GCTCTTC 2 cut(s) 676, 1887
LmnI GCTCC 3 cut(s) 52, 816, 1855
Lsp1109I GCAGC 1 cut(s) 717
LweI GCATC 3 cut(s) 265, 433, 481
MaeI CTAG 7 cut(s) 390, 923, 1337, 1449, 1505, 1575, 2472
MaeII ACGT 3 cut(s) 252, 1059, 2465
MaeIII GTNAC 5 cut(s) 945, 1148, 1564, 1634, 2227
MfeI CAATTG 1 cut(s) 1046
MflI RGATCY 3 cut(s) 1020, 2158, 2458
MhlI GDGCHC 6 cut(s) 587, 671, 989, 1043, 1597, 1724
MlsI TGGCCA 3 cut(s) 971, 1803, 2016
MluNI TGGCCA 3 cut(s) 971, 1803, 2016
Mly113I GGCGCC 1 cut(s) 1167
MlyI GAGTC 4 cut(s) 1424, 1667, 2256, 2354
MmeI TCCRAC 2 cut(s) 584, 2267
Mox20I TGGCCA 3 cut(s) 971, 1803, 2016
Mph1103I ATGCAT 1 cut(s) 1800
MroI TCCGGA 1 cut(s) 1481
MscI TGGCCA 3 cut(s) 971, 1803, 2016
MseI TTAA 5 cut(s) 294, 354, 1305, 1517, 2151
MslI CAYNNNNRTG 7 cut(s) 405, 965, 1157, 1203, 1803, 1988, 2112
Msp20I TGGCCA 3 cut(s) 971, 1803, 2016
MspI CCGG 3 cut(s) 211, 231, 1482
MspR9I CCNGG 5 cut(s) 155, 211, 1298, 2233, 2277
MunI CAATTG 1 cut(s) 1046
Mva1269I GAATGC 4 cut(s) 802, 1474, 1523, 1800
MvaI CCWGG 4 cut(s) 155, 1298, 2233, 2277
MwoI GCNNNNNNNGC 3 cut(s) 730, 1520, 2013
NarI GGCGCC 1 cut(s) 1167
NciI CCSGG 1 cut(s) 211
NdeI CATATG 1 cut(s) 2032
NlaIV GGNNCC 6 cut(s) 7, 54, 1139, 1168, 1857, 2160
NmeAIII GCCGAG 1 cut(s) 2033
NmuCI GTSAC 1 cut(s) 1564
NsiI ATGCAT 1 cut(s) 1800
NspI RCATGY 4 cut(s) 410, 1090, 1537, 1896
OliI CACNNNNGTG 1 cut(s) 965
PaeI GCATGC 1 cut(s) 1896
PagI TCATGA 2 cut(s) 1225, 1608
PaqCI CACCTGC 1 cut(s) 1994
PceI AGGCCT 1 cut(s) 359
PciI ACATGT 1 cut(s) 1086
PciSI GCTCTTC 2 cut(s) 676, 1887
PctI GAATGC 4 cut(s) 802, 1474, 1523, 1800
PfeI GAWTC 6 cut(s) 397, 703, 1144, 1216, 1256, 1355
PfoI TCCNGGA 1 cut(s) 209
PkrI GCNGC 4 cut(s) 732, 903, 1171, 1846
PleI GAGTC 4 cut(s) 1423, 1666, 2256, 2353
PluTI GGCGCC 1 cut(s) 1170
PpsI GAGTC 4 cut(s) 1423, 1666, 2256, 2353
PpuMI RGGWCCY 1 cut(s) 1137
PscI ACATGT 1 cut(s) 1086
Psp124BI GAGCTC 2 cut(s) 587, 1724
Psp5II RGGWCCY 1 cut(s) 1137
Psp6I CCWGG 4 cut(s) 153, 1296, 2231, 2275
PspEI GGTNACC 1 cut(s) 1634
PspGI CCWGG 4 cut(s) 153, 1296, 2231, 2275
PspN4I GGNNCC 6 cut(s) 7, 54, 1139, 1168, 1857, 2160
PspPI GGNCC 1 cut(s) 1137
PspPPI RGGWCCY 1 cut(s) 1137
PstNI CAGNNNCTG 1 cut(s) 154
PsuI RGATCY 3 cut(s) 1020, 2158, 2458
RsaI GTAC 5 cut(s) 251, 773, 1982, 2182, 2506
RsaNI GTAC 5 cut(s) 250, 772, 1981, 2181, 2505
RseI CAYNNNNRTG 7 cut(s) 405, 965, 1157, 1203, 1803, 1988, 2112
SacI GAGCTC 2 cut(s) 587, 1724
SapI GCTCTTC 2 cut(s) 676, 1887
SaqAI TTAA 5 cut(s) 294, 354, 1305, 1517, 2151
SatI GCNGC 4 cut(s) 731, 902, 1170, 1845
Sau96I GGNCC 1 cut(s) 1137
SchI GAGTC 4 cut(s) 1424, 1667, 2256, 2354
ScrFI CCNGG 5 cut(s) 155, 211, 1298, 2233, 2277
SduI GDGCHC 6 cut(s) 587, 671, 989, 1043, 1597, 1724
SfaNI GCATC 3 cut(s) 265, 433, 481
SfcI CTRYAG 1 cut(s) 1311
SfiI GGCCNNNNNGGCC 1 cut(s) 2013
SfoI GGCGCC 1 cut(s) 1168
SinI GGWCC 1 cut(s) 1137
SmiMI CAYNNNNRTG 7 cut(s) 405, 965, 1157, 1203, 1803, 1988, 2112
SmlI CTYRAG 2 cut(s) 1723, 2264
SmoI CTYRAG 2 cut(s) 1723, 2264
SpeI ACTAGT 1 cut(s) 1336
SphI GCATGC 1 cut(s) 1896
SseBI AGGCCT 1 cut(s) 359
SsiI CCGC 8 cut(s) 800, 902, 908, 1101, 1170, 1282, 1844, 2324
SspDI GGCGCC 1 cut(s) 1166
SspI AATATT 1 cut(s) 2170
SspMI CTAG 7 cut(s) 390, 923, 1337, 1449, 1505, 1575, 2472
SstI GAGCTC 2 cut(s) 587, 1724
StuI AGGCCT 1 cut(s) 359
StyD4I CCNGG 5 cut(s) 153, 209, 1296, 2231, 2275
TaaI ACNGT 7 cut(s) 150, 853, 1564, 1570, 1980, 2180, 2425
TaiI ACGT 3 cut(s) 255, 1062, 2468
TaqI TCGA 3 cut(s) 176, 197, 452
TatI WGTACW 3 cut(s) 771, 1980, 2504
TauI GCSGC 3 cut(s) 904, 1172, 1847
TfiI GAWTC 6 cut(s) 397, 703, 1144, 1216, 1256, 1355
Tru1I TTAA 5 cut(s) 294, 354, 1305, 1517, 2151
Tru9I TTAA 5 cut(s) 294, 354, 1305, 1517, 2151
TscAI CASTG 4 cut(s) 68, 858, 1060, 1381
TseFI GTSAC 1 cut(s) 1564
TseI GCWGC 1 cut(s) 730
Tsp45I GTSAC 1 cut(s) 1564
TspGWI ACGGA 1 cut(s) 2434
TspRI CASTG 4 cut(s) 68, 858, 1060, 1381
VpaK11BI GGWCC 1 cut(s) 1137
XapI RAATTY 9 cut(s) 178, 329, 1028, 1180, 1323, 1652, 1756, 2103, 2194
XbaI TCTAGA 3 cut(s) 922, 1504, 2471
XceI RCATGY 4 cut(s) 410, 1090, 1537, 1896
XcmI CCANNNNNNNNNTGG 1 cut(s) 454
XspI CTAG 7 cut(s) 390, 923, 1337, 1449, 1505, 1575, 2472
ZraI GACGTC 1 cut(s) 1060
Zsp2I ATGCAT 1 cut(s) 1800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.