FvH4_5g08660

Plays an essential role in chain termination during de novo fatty acid synthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013671
Physical Location & Seq
Reverse (-)
4977512 .. 4980282
2771 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g08660.t1

Sequence Viewer

Length: 1209 bp
ATGGCATCAATGGCAGCGAGAATTAATCCGACGCAATACCTTTCAAGGCACATTTTCAATGCCGAGAAGAGTGATGGTGTTGATATGGTCACCCAAATGGGATTTTATCCTTCGATGGATAGGGCGATGGTGACAAGCAAACATCGCAGATTTCCGGTCATGGCTAGTAGTTCTGTTAATCCGAGAAGTCATGTCGAAACGATCAACGGAAAGAAGATTAATGGGATTCATGTGGAAGAGGCTGATTCATTGTTAGGAAACAAGAGTATTGGTACTGAGTTAGTTATAGATAGAGGTAGTGATGCATCTCTTCACTCATGTTTACATGGGAAATTTGTGGAGGATAGGTTTGTATATAGGCAGACATTCGTTATTAGATCTTATGAGATTGGTCCTGACAAAACTGCCACCATGGAGACACTGATGAATCTTCTTCAGGAGACAGCTCTGAATCACGTAACAGGTTCTGGCCTTGCCGGAAATGGCTTCGGGGCTACTCGTGAGATGAGCCTCCGGAAACTTATTTGGGTCGTCACTCGCGTCCATATTCAAGTTGAGAGATACAGTTGCTGGGGAGATGTTGTGGAAATAGATACTTGGGTGGATGCAGCAGGCAAAAACGGAATGCGCAGGGATTGGATTATCCGAGACTATCATACTCAAGAAATTATTACCAGAGCAACAAGCACTTGGGTGATAATGAATAGAGAAACAAGAAGGTTGTCAAAGATCCCTGACCAAGTGAGACAAGAGGTAGAGCCTTTCTACCTAAATAGAGCAGCAATTGCCACTGAGAAAATCGATAAGGAGAAAATTGACAAGCTCACTGATGGAACTGCCGGGAGAATCCGATCAGGCTTAGCACCTCGATGGAGTGACATGGATGCCAACCAGCATGTAAACAATGTGAAATACATTGGTTGGATTCTTGAGAGCGTGCCACTCAAAGTATTAGAAGAATATGACATGACAAGCATGACTCTGGAGTTTCGACGAGAATGTAGGCAGTCAAATTTGCTAGAATCATTGACGAGCACAACAGCAAGTTTGGCTCATGAACATCATTGCAACAACAGCAATGACAACAACTCGATCAATCGCAGACCAGACCTCCAGTACACACACTTGCTTCGGATGCAAGCCGATAAGGCAGAGATAGTGCGAGCAAGAACAGAATGGCGTGGCAAACAAAAACATATATTGCACTGA

Protein Analysis

403

Amino Acids

46.01

Weight (kDa)

8.76

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyl-ACP_TE PF01643 118 - 251 1.3e-36 Acyl-ACP thioesterase N-terminal domain
Acyl-ACP_TE_C PF20791 284 - 394 4.3e-23 Acyl-ACP thioesterase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013671)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g08660
malus_domestica MD06G1138100.v1.1 MD14G1153700.v1.1
prunus_persica Prupe.5G148400_v2.0.a1
pyrus_communis pycom06g12930 pycom06g12940 pycom14g12780 pycom14g12790
rosa_chinensis RchiOBHm_Chr7g0189721
rosa_laevigata RLG00000004595
rosa_multiflora Rmu_sc0001924.1_g000022
rosa_roxburghii Rroxscaffold_3G00265230
rosa_rugosa Rorug06G0499300
rosa_samantha Rh7AG104600 Rh7BG107000 Rh7CG109100 Rh7DG107600
rosa_wichuraiana Rw7G009050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 629
AccII CGCG 1 cut(s) 540
AccIII TCCGGA 1 cut(s) 513
AclWI GGATC 1 cut(s) 724
AcsI RAATTY 2 cut(s) 332, 1012
AcuI CTGAAG 1 cut(s) 419
AfaI GTAC 2 cut(s) 274, 1118
AgsI TTSAA 3 cut(s) 45, 58, 551
AleI CACNNNNGTG 1 cut(s) 692
AluBI AGCT 2 cut(s) 446, 823
AluI AGCT 2 cut(s) 446, 823
Alw21I GWGCWC 1 cut(s) 1037
Alw26I GTCTC 4 cut(s) 410, 434, 642, 739
AlwI GGATC 1 cut(s) 724
AlwNI CAGNNNCTG 2 cut(s) 467, 570
Aor13HI TCCGGA 1 cut(s) 513
AoxI GGCC 1 cut(s) 469
ApeKI GCWGC 3 cut(s) 14, 608, 779
ApoI RAATTY 2 cut(s) 332, 1012
AseI ATTAAT 2 cut(s) 24, 219
AspLEI GCGC 1 cut(s) 630
AspS9I GGNCC 1 cut(s) 392
AsuC2I CCSGG 1 cut(s) 841
AsuHPI GGTGA 3 cut(s) 82, 142, 706
AvaII GGWCC 1 cut(s) 392
BaeI ACNNNNGTAYC 2 cut(s) 585, 618
BauI CACGAG 1 cut(s) 498
Bbv12I GWGCWC 1 cut(s) 1037
BbvI GCAGC 3 cut(s) 26, 620, 791
BccI CCATC 5 cut(s) 68, 109, 121, 824, 864
BcnI CCSGG 1 cut(s) 841
BcoDI GTCTC 4 cut(s) 410, 434, 642, 739
BfaI CTAG 2 cut(s) 165, 1019
BglI GCCNNNNNGGC 1 cut(s) 1148
BglII AGATCT 1 cut(s) 377
BisI GCNGC 3 cut(s) 15, 609, 780
BlpI GCTNAGC 1 cut(s) 859
BlsI GCNGC 3 cut(s) 16, 610, 781
Bme1390I CCNGG 1 cut(s) 841
Bme18I GGWCC 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 392
BmrFI CCNGG 1 cut(s) 841
BmsI GCATC 6 cut(s) 14, 292, 314, 595, 874, 1125
BpmI CTGGAG 2 cut(s) 1004, 1097
Bpu1102I GCTNAGC 1 cut(s) 859
BpuEI CTTGAG 2 cut(s) 645, 950
BpuMI CCSGG 1 cut(s) 841
Bsa29I ATCGAT 1 cut(s) 801
BsaAI YACGTR 1 cut(s) 457
BsaJI CCNNGG 1 cut(s) 411
BsaWI WCCGGW 2 cut(s) 154, 513
BsaXI ACNNNNNCTCC 6 cut(s) 332, 362, 567, 597, 1095, 1125
Bse1I ACTGG 1 cut(s) 1114
Bse3DI GCAATG 2 cut(s) 1063, 1084
BseAI TCCGGA 1 cut(s) 513
BseCI ATCGAT 1 cut(s) 801
BseDI CCNNGG 1 cut(s) 411
BseGI GGATG 3 cut(s) 610, 889, 1140
BseMI GCAATG 2 cut(s) 1063, 1084
BseMII CTCAG 2 cut(s) 267, 783
BseNI ACTGG 1 cut(s) 1114
BseXI GCAGC 3 cut(s) 26, 620, 791
BseYI CCCAGC 1 cut(s) 570
Bsh1236I CGCG 1 cut(s) 540
BshFI GGCC 1 cut(s) 471
BshVI ATCGAT 1 cut(s) 801
BsiHKAI GWGCWC 1 cut(s) 1037
BsiSI CCGG 4 cut(s) 155, 477, 514, 840
BsmAI GTCTC 4 cut(s) 410, 434, 642, 739
BsmI GAATGC 1 cut(s) 630
BsnI GGCC 1 cut(s) 471
Bsp1286I GDGCHC 1 cut(s) 1037
Bsp13I TCCGGA 1 cut(s) 513
Bsp143I GATC 5 cut(s) 201, 377, 729, 851, 1092
Bsp1720I GCTNAGC 1 cut(s) 859
Bsp19I CCATGG 1 cut(s) 411
BspANI GGCC 1 cut(s) 471
BspCNI CTCAG 2 cut(s) 268, 784
BspDI ATCGAT 1 cut(s) 801
BspEI TCCGGA 1 cut(s) 513
BspFNI CGCG 1 cut(s) 540
BspHI TCATGA 1 cut(s) 1054
BspPI GGATC 1 cut(s) 724
BsrDI GCAATG 2 cut(s) 1063, 1084
BsrI ACTGG 1 cut(s) 1114
BssECI CCNNGG 1 cut(s) 411
BssMI GATC 5 cut(s) 201, 377, 729, 851, 1092
BssSI CACGAG 1 cut(s) 498
BssT1I CCWWGG 1 cut(s) 411
Bst2BI CACGAG 1 cut(s) 498
Bst4CI ACNGT 1 cut(s) 566
Bst6I CTCTTC 3 cut(s) 62, 231, 315
BstAPI GCANNNNNTGC 1 cut(s) 785
BstBAI YACGTR 1 cut(s) 457
BstC8I GCNNGC 4 cut(s) 613, 938, 1140, 1164
BstDEI CTNAG 3 cut(s) 276, 792, 859
BstDSI CCRYGG 1 cut(s) 411
BstEII GGTNACC 1 cut(s) 88
BstF5I GGATG 3 cut(s) 610, 889, 1140
BstFNI CGCG 1 cut(s) 540
BstHHI GCGC 1 cut(s) 630
BstKTI GATC 5 cut(s) 204, 380, 732, 854, 1095
BstMAI GTCTC 4 cut(s) 410, 434, 642, 739
BstMBI GATC 5 cut(s) 201, 377, 729, 851, 1092
BstMWI GCNNNNNNNGC 7 cut(s) 11, 144, 785, 1049, 1074, 1135, 1148
BstNSI RCATGY 1 cut(s) 899
BstPI GGTNACC 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 839
BstUI CGCG 1 cut(s) 540
BstV1I GCAGC 3 cut(s) 26, 620, 791
BstX2I RGATCY 2 cut(s) 377, 729
BstYI RGATCY 2 cut(s) 377, 729
Bsu15I ATCGAT 1 cut(s) 801
BsuRI GGCC 1 cut(s) 471
BsuTUI ATCGAT 1 cut(s) 801
BtgI CCRYGG 1 cut(s) 411
BtgZI GCGATG 2 cut(s) 128, 140
BtsCI GGATG 3 cut(s) 610, 889, 1140
BtsIMutI CAGTG 4 cut(s) 419, 789, 825, 1204
Cac8I GCNNGC 4 cut(s) 613, 938, 1140, 1164
CaiI CAGNNNCTG 2 cut(s) 467, 570
CciI TCATGA 1 cut(s) 1054
CfoI GCGC 1 cut(s) 630
Cfr13I GGNCC 1 cut(s) 392
ClaI ATCGAT 1 cut(s) 801
CseI GACGC 2 cut(s) 40, 529
Csp6I GTAC 2 cut(s) 273, 1117
CviQI GTAC 2 cut(s) 273, 1117
DdeI CTNAG 3 cut(s) 276, 792, 859
DpnI GATC 5 cut(s) 203, 379, 731, 853, 1094
DpnII GATC 5 cut(s) 201, 377, 729, 851, 1092
Eam1104I CTCTTC 3 cut(s) 62, 231, 315
EarI CTCTTC 3 cut(s) 62, 231, 315
Eco130I CCWWGG 1 cut(s) 411
Eco47I GGWCC 1 cut(s) 392
Eco57I CTGAAG 1 cut(s) 419
Eco91I GGTNACC 1 cut(s) 88
EcoO65I GGTNACC 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 411
EcoT22I ATGCAT 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 411
Fnu4HI GCNGC 3 cut(s) 15, 609, 780
FokI GGATG 3 cut(s) 617, 896, 1147
Fsp4HI GCNGC 3 cut(s) 15, 609, 780
FspBI CTAG 2 cut(s) 165, 1019
FspI TGCGCA 1 cut(s) 629
GlaI GCGC 1 cut(s) 629
GluI GCNGC 3 cut(s) 15, 609, 780
GsaI CCCAGC 1 cut(s) 574
GsuI CTGGAG 2 cut(s) 1004, 1097
HaeIII GGCC 1 cut(s) 471
HapII CCGG 4 cut(s) 155, 477, 514, 840
HgaI GACGC 2 cut(s) 40, 529
HhaI GCGC 1 cut(s) 630
Hin6I GCGC 1 cut(s) 628
HinP1I GCGC 1 cut(s) 628
HinfI GANTC 8 cut(s) 226, 245, 427, 451, 846, 925, 979, 1022
HpaII CCGG 4 cut(s) 155, 477, 514, 840
HphI GGTGA 3 cut(s) 82, 142, 706
Hpy166II GTNNAC 3 cut(s) 323, 901, 1119
Hpy188I TCNGA 6 cut(s) 30, 183, 450, 647, 851, 1134
Hpy188III TCNNGA 8 cut(s) 395, 437, 500, 514, 662, 929, 983, 1055
Hpy8I GTNNAC 3 cut(s) 323, 901, 1119
Hpy99I CGWCG 2 cut(s) 34, 996
HpyAV CCTTC 2 cut(s) 120, 711
HpyCH4III ACNGT 1 cut(s) 566
HpyCH4IV ACGT 1 cut(s) 456
HpyCH4V TGCA 5 cut(s) 305, 608, 1068, 1138, 1204
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 144, 785, 1049, 1074, 1135, 1148
HpyF3I CTNAG 3 cut(s) 276, 792, 859
HpySE526I ACGT 1 cut(s) 456
HspAI GCGC 1 cut(s) 628
Kpn2I TCCGGA 1 cut(s) 513
Kzo9I GATC 5 cut(s) 201, 377, 729, 851, 1092
Lsp1109I GCAGC 3 cut(s) 26, 620, 791
LweI GCATC 6 cut(s) 14, 292, 314, 595, 874, 1125
MaeI CTAG 2 cut(s) 165, 1019
MaeII ACGT 1 cut(s) 456
MaeIII GTNAC 5 cut(s) 88, 130, 457, 532, 875
MalI GATC 5 cut(s) 203, 379, 731, 853, 1094
MboI GATC 5 cut(s) 201, 377, 729, 851, 1092
MboII GAAGA 7 cut(s) 79, 226, 248, 302, 422, 425, 968
MfeI CAATTG 1 cut(s) 783
MflI RGATCY 2 cut(s) 377, 729
MhlI GDGCHC 1 cut(s) 1037
MluCI AATT 6 cut(s) 21, 332, 666, 783, 813, 1012
MlyI GAGTC 1 cut(s) 973
MmeI TCCRAC 2 cut(s) 53, 902
MnlI CCTC 7 cut(s) 232, 287, 334, 521, 745, 876, 1121
Mph1103I ATGCAT 1 cut(s) 307
MroI TCCGGA 1 cut(s) 513
MseI TTAA 3 cut(s) 24, 177, 219
MslI CAYNNNNRTG 3 cut(s) 95, 692, 868
MspI CCGG 4 cut(s) 155, 477, 514, 840
MspR9I CCNGG 1 cut(s) 841
MunI CAATTG 1 cut(s) 783
Mva1269I GAATGC 1 cut(s) 630
MvnI CGCG 1 cut(s) 540
MwoI GCNNNNNNNGC 7 cut(s) 11, 144, 785, 1049, 1074, 1135, 1148
NciI CCSGG 1 cut(s) 841
NcoI CCATGG 1 cut(s) 411
NdeII GATC 5 cut(s) 201, 377, 729, 851, 1092
NmeAIII GCCGAG 1 cut(s) 88
NmuCI GTSAC 4 cut(s) 88, 130, 532, 875
NsbI TGCGCA 1 cut(s) 629
NsiI ATGCAT 1 cut(s) 307
NspI RCATGY 1 cut(s) 899
OliI CACNNNNGTG 1 cut(s) 692
PagI TCATGA 1 cut(s) 1054
PcsI WCGNNNNNNNCGW 1 cut(s) 537
PctI GAATGC 1 cut(s) 630
PfeI GAWTC 7 cut(s) 226, 245, 427, 451, 846, 925, 1022
PkrI GCNGC 3 cut(s) 16, 610, 781
PleI GAGTC 1 cut(s) 973
PpsI GAGTC 1 cut(s) 973
Ppu21I YACGTR 1 cut(s) 457
PshBI ATTAAT 2 cut(s) 24, 219
PspEI GGTNACC 1 cut(s) 88
PspFI CCCAGC 1 cut(s) 570
PspPI GGNCC 1 cut(s) 392
PstNI CAGNNNCTG 2 cut(s) 467, 570
PsuI RGATCY 2 cut(s) 377, 729
RsaI GTAC 2 cut(s) 274, 1118
RsaNI GTAC 2 cut(s) 273, 1117
RseI CAYNNNNRTG 3 cut(s) 95, 692, 868
SaqAI TTAA 3 cut(s) 24, 177, 219
SatI GCNGC 3 cut(s) 15, 609, 780
Sau3AI GATC 5 cut(s) 201, 377, 729, 851, 1092
Sau96I GGNCC 1 cut(s) 392
SchI GAGTC 1 cut(s) 973
ScrFI CCNGG 1 cut(s) 841
SduI GDGCHC 1 cut(s) 1037
SfaNI GCATC 6 cut(s) 14, 292, 314, 595, 874, 1125
SinI GGWCC 1 cut(s) 392
SmiMI CAYNNNNRTG 3 cut(s) 95, 692, 868
SmlI CTYRAG 2 cut(s) 660, 929
SmoI CTYRAG 2 cut(s) 660, 929
Sse9I AATT 6 cut(s) 21, 332, 666, 783, 813, 1012
SspMI CTAG 2 cut(s) 165, 1019
StyD4I CCNGG 1 cut(s) 839
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 1 cut(s) 566
TaiI ACGT 1 cut(s) 459
TaqI TCGA 6 cut(s) 113, 195, 801, 868, 991, 1091
TasI AATT 6 cut(s) 21, 332, 666, 783, 813, 1012
TatI WGTACW 1 cut(s) 1116
TfiI GAWTC 7 cut(s) 226, 245, 427, 451, 846, 925, 1022
Tru1I TTAA 3 cut(s) 24, 177, 219
Tru9I TTAA 3 cut(s) 24, 177, 219
TscAI CASTG 3 cut(s) 426, 796, 832
TseFI GTSAC 4 cut(s) 88, 130, 532, 875
TseI GCWGC 3 cut(s) 14, 608, 779
Tsp45I GTSAC 4 cut(s) 88, 130, 532, 875
TspDTI ATGAA 5 cut(s) 218, 237, 440, 716, 1071
TspGWI ACGGA 2 cut(s) 222, 636
TspRI CASTG 3 cut(s) 426, 796, 832
VpaK11BI GGWCC 1 cut(s) 392
VspI ATTAAT 2 cut(s) 24, 219
XapI RAATTY 2 cut(s) 332, 1012
XceI RCATGY 1 cut(s) 899
XspI CTAG 2 cut(s) 165, 1019
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.