Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0013671

Physical Location & Seq

Genomic Coordinates Forward (+)

28302086 .. 28304589

Gene Structure 2504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1138100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGCAGCAAGAAGTAATAATATCGCCACGCTACGCCTCCCTGGGGACGTGTTCAAGGTGTGGAAGAAGAATGAGACGGGGACGAAATTAGGGTGTTATCCTTCAAGGCATGTAGCAATGATCACGAGAAAAAATGGAAACTTTGTGGTGAGGGCCGGTGCCGGTGGAACTCCTAGAAGCGTGCAGACAATCAATGGGAAGGTCAATGGTGTTCATGTGGCAGAGGCTAAATTATTTGGAAACAAGAATAGTATAGAGCTGATTAATGGTGACGGCGATTCACCTCCTCATTCCTCTTTGCATGGAAAGTTTGTGGAGGAGAGGTTTGTTTATAGGCAGACGTTTATTATTAGGTCGTATGAGATTGGACCTGACAAAACTGCCACCATGGAAACCCTAATGAATCTCCTCCAGGAGACAGCTCTAAATCATGTGACAAGTTCCGGCCTTGCCGGAAATGGATTCGGGGCTACTCGTGAGATGAGCATCCGGAAGCTCATTTGGGTTGTTACACGGATTCACATTCAAGTACAGAGATATAGTTCCTGGGGAGATGTGGTCGAAATCGATACTTGGGTGGATGCAACAGGCAAAAACGGAATGCGAAGAGATTGGATTATCCGAGACTACCAAACTCAAGAAATCATTACCAGAGCTACAAGCACCTGGGTGATCATGAACAGAGAGACAAGAAGGCTGTCCAAGATACCTGATCAAGTCAGGCAAGAGGTGTTACCATTCTACCTAAACAGATTTGCAATTGCTACAGAGAAAAATGATAGCGAGAAAATCGACAAGCTCAACGACGATACTGCAGAGAGGATCACGTCAGGTCTAGCACCAAGATGGAGTGACATGGATGCCAACCAGCATGTTAACAATGTGAAATACATTGGATGGATTTTAGAGAGTGTGCCCATCAATGTGTTAGGAGATTATGATCTCACAAGCATGACATTGGAGTATAGACGTGAATGTAGGCAATCAAATTTGCTAGAGTCCCTAACAAGTACAACATCAAGTTTGGCTGATGACTCCAACTTCAAGAACAACTCCATCAATCGTAGACCAGACCTAGAATACACACACCTTCTTCGGATGCAGGCCGATAAGGTGGAGATAATACGAGCACGAACAGAATGGAATAGGAAACAAAAGCATGAACTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko01100 ko01212 map00061 map01100 map01212

Pfam Domains

Protein Families

Acyl-ACP_TE

Protein Analysis

391

Amino Acids

44.54

Weight (kDa)

9.34

Isoelectric Point (pI)

34.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyl-ACP_TE	PF01643	110 - 243	4.7e-38	Acyl-ACP thioesterase N-terminal domain
Acyl-ACP_TE_C	PF20791	271 - 382	1.8e-23	Acyl-ACP thioesterase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013671)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08660
malus_domestica	MD06G1138100.v1.1 MD14G1153700.v1.1
prunus_persica	Prupe.5G148400_v2.0.a1
pyrus_communis	pycom06g12930 pycom06g12940 pycom14g12780 pycom14g12790
rosa_chinensis	RchiOBHm_Chr7g0189721
rosa_laevigata	RLG00000004595
rosa_multiflora	Rmu_sc0001924.1_g000022
rosa_roxburghii	Rroxscaffold_3G00265230
rosa_rugosa	Rorug06G0499300
rosa_samantha	Rh7AG104600 Rh7BG107000 Rh7CG109100 Rh7DG107600
rosa_wichuraiana	Rw7G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	1066
AccIII	TCCGGA	1 cut(s)	489
AclWI	GGATC	1 cut(s)	830
AcsI	RAATTY	1 cut(s)	988
AfaI	GTAC	2 cut(s)	531, 1012
AfiI	CCNNNNNNNGG	1 cut(s)	43
AflIII	ACRYGT	1 cut(s)	48
AgsI	TTSAA	4 cut(s)	55, 105, 527, 1045
AjiI	CACGTC	3 cut(s)	49, 828, 971
AjnI	CCWGG	4 cut(s)	40, 411, 545, 665
AleI	CACNNNNGTG	1 cut(s)	668
AluBI	AGCT	5 cut(s)	259, 422, 496, 656, 799
AluI	AGCT	5 cut(s)	259, 422, 496, 656, 799
Alw21I	GWGCWC	1 cut(s)	1132
Alw26I	GTCTC	4 cut(s)	68, 410, 618, 680
AlwI	GGATC	1 cut(s)	830
Aor13HI	TCCGGA	1 cut(s)	489
AoxI	GGCC	3 cut(s)	153, 445, 1104
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	988
AseI	ATTAAT	1 cut(s)	264
AspS9I	GGNCC	2 cut(s)	153, 368
AsuHPI	GGTGA	4 cut(s)	160, 273, 281, 682
AvaII	GGWCC	1 cut(s)	368
BaeGI	GKGCMC	1 cut(s)	918
BaeI	ACNNNNGTAYC	2 cut(s)	561, 594
BanI	GGYRCC	1 cut(s)	158
BauI	CACGAG	2 cut(s)	124, 474
Bbv12I	GWGCWC	1 cut(s)	1132
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	4 cut(s)	840, 891, 926, 1064
BceAI	ACGGC	1 cut(s)	289
BcgI	CGANNNNNNTGC	2 cut(s)	794, 828
BciT130I	CCWGG	4 cut(s)	42, 413, 547, 667
BclI	TGATCA	3 cut(s)	120, 672, 712
BcoDI	GTCTC	4 cut(s)	68, 410, 618, 680
BfaI	CTAG	4 cut(s)	174, 836, 995, 1076
BfmI	CTRYAG	2 cut(s)	765, 813
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	4 cut(s)	42, 413, 547, 667
Bme18I	GGWCC	1 cut(s)	368
BmgBI	CACGTC	3 cut(s)	49, 828, 971
BmgT120I	GGNCC	2 cut(s)	153, 368
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	4 cut(s)	42, 413, 547, 667
BmsI	GCATC	4 cut(s)	495, 571, 850, 1089
BpmI	CTGGAG	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	621
Bsa29I	ATCGAT	1 cut(s)	567
BsaBI	GATNNNNATC	2 cut(s)	485, 939
BsaJI	CCNNGG	5 cut(s)	40, 41, 387, 546, 666
BsaWI	WCCGGW	1 cut(s)	489
BsaXI	ACNNNNNCTCC	4 cut(s)	308, 338, 543, 573
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse118I	RCCGGY	2 cut(s)	155, 161
Bse3DI	GCAATG	1 cut(s)	123
Bse8I	GATNNNNATC	2 cut(s)	485, 939
BseAI	TCCGGA	1 cut(s)	489
BseBI	CCWGG	4 cut(s)	42, 413, 547, 667
BseCI	ATCGAT	1 cut(s)	567
BseDI	CCNNGG	5 cut(s)	40, 41, 387, 546, 666
BseGI	GGATG	5 cut(s)	486, 586, 865, 902, 1104
BseJI	GATNNNNATC	2 cut(s)	485, 939
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMI	GCAATG	1 cut(s)	123
BseRI	GAGGAG	3 cut(s)	276, 332, 398
BseSI	GKGCMC	1 cut(s)	918
BseXI	GCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	203
BshFI	GGCC	3 cut(s)	155, 447, 1106
BshNI	GGYRCC	1 cut(s)	158
BshVI	ATCGAT	1 cut(s)	567
BsiHKAI	GWGCWC	1 cut(s)	1132
BsiSI	CCGG	5 cut(s)	156, 162, 444, 453, 490
BslFI	GGGAC	3 cut(s)	59, 94, 985
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	4 cut(s)	68, 410, 618, 680
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	3 cut(s)	59, 94, 985
BsmI	GAATGC	1 cut(s)	606
BsnI	GGCC	3 cut(s)	155, 447, 1106
Bsp1286I	GDGCHC	2 cut(s)	918, 1132
Bsp13I	TCCGGA	1 cut(s)	489
Bsp143I	GATC	5 cut(s)	120, 672, 712, 822, 940
Bsp19I	CCATGG	1 cut(s)	387
BspANI	GGCC	3 cut(s)	155, 447, 1106
BspDI	ATCGAT	1 cut(s)	567
BspEI	TCCGGA	1 cut(s)	489
BspHI	TCATGA	1 cut(s)	675
BspLI	GGNNCC	1 cut(s)	160
BspMAI	CTGCAG	1 cut(s)	817
BspPI	GGATC	1 cut(s)	830
BspT107I	GGYRCC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	123
BsrFI	RCCGGY	2 cut(s)	155, 161
BssAI	RCCGGY	2 cut(s)	155, 161
BssECI	CCNNGG	5 cut(s)	40, 41, 387, 546, 666
BssMI	GATC	5 cut(s)	120, 672, 712, 822, 940
BssSI	CACGAG	2 cut(s)	124, 474
BssT1I	CCWWGG	1 cut(s)	387
Bst2BI	CACGAG	2 cut(s)	124, 474
Bst2UI	CCWGG	4 cut(s)	42, 413, 547, 667
Bst6I	CTCTTC	1 cut(s)	601
BstAPI	GCANNNNNTGC	1 cut(s)	1165
BstC8I	GCNNGC	2 cut(s)	182, 1104
BstDSI	CCRYGG	1 cut(s)	387
BstF5I	GGATG	5 cut(s)	486, 586, 865, 902, 1104
BstKTI	GATC	5 cut(s)	123, 675, 715, 825, 943
BstMAI	GTCTC	4 cut(s)	68, 410, 618, 680
BstMBI	GATC	5 cut(s)	120, 672, 712, 822, 940
BstMWI	GCNNNNNNNGC	1 cut(s)	1165
BstNI	CCWGG	4 cut(s)	42, 413, 547, 667
BstNSI	RCATGY	2 cut(s)	113, 875
BstSCI	CCNGG	4 cut(s)	40, 411, 545, 665
BstSFI	CTRYAG	2 cut(s)	765, 813
BstSLI	GKGCMC	1 cut(s)	918
BstV1I	GCAGC	1 cut(s)	17
Bsu15I	ATCGAT	1 cut(s)	567
BsuRI	GGCC	3 cut(s)	155, 447, 1106
BsuTUI	ATCGAT	1 cut(s)	567
BtgI	CCRYGG	1 cut(s)	387
BtrI	CACGTC	3 cut(s)	49, 828, 971
BtsCI	GGATG	5 cut(s)	486, 586, 865, 902, 1104
Cac8I	GCNNGC	2 cut(s)	182, 1104
CciI	TCATGA	1 cut(s)	675
Cfr10I	RCCGGY	2 cut(s)	155, 161
Cfr13I	GGNCC	2 cut(s)	153, 368
ClaI	ATCGAT	1 cut(s)	567
Csp6I	GTAC	2 cut(s)	530, 1011
CviQI	GTAC	2 cut(s)	530, 1011
DpnI	GATC	5 cut(s)	122, 674, 714, 824, 942
DpnII	GATC	5 cut(s)	120, 672, 712, 822, 940
Eam1104I	CTCTTC	1 cut(s)	601
EarI	CTCTTC	1 cut(s)	601
Eco130I	CCWWGG	1 cut(s)	387
Eco47I	GGWCC	1 cut(s)	368
EcoRII	CCWGG	4 cut(s)	40, 411, 545, 665
EcoT14I	CCWWGG	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	387
Esp3I	CGTCTC	1 cut(s)	68
FaqI	GGGAC	3 cut(s)	59, 94, 985
FbaI	TGATCA	3 cut(s)	120, 672, 712
FblI	GTMKAC	1 cut(s)	1066
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	5 cut(s)	473, 593, 872, 909, 1111
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	4 cut(s)	174, 836, 995, 1076
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	395
HaeIII	GGCC	3 cut(s)	155, 447, 1106
HapII	CCGG	5 cut(s)	156, 162, 444, 453, 490
HincII	GTYRAC	1 cut(s)	877
HindII	GTYRAC	1 cut(s)	877
HinfI	GANTC	6 cut(s)	278, 403, 462, 517, 998, 1034
HpaI	GTTAAC	1 cut(s)	877
HpaII	CCGG	5 cut(s)	156, 162, 444, 453, 490
HphI	GGTGA	4 cut(s)	160, 273, 281, 682
Hpy166II	GTNNAC	2 cut(s)	877, 1067
Hpy188I	TCNGA	2 cut(s)	623, 1098
Hpy188III	TCNNGA	6 cut(s)	124, 476, 490, 638, 676, 1045
Hpy8I	GTNNAC	2 cut(s)	877, 1067
Hpy99I	CGWCG	1 cut(s)	809
HpyAV	CCTTC	4 cut(s)	111, 193, 687, 1100
HpyCH4IV	ACGT	4 cut(s)	48, 341, 827, 970
HpyCH4V	TGCA	7 cut(s)	184, 301, 584, 758, 815, 1102, 1168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1165
HpySE526I	ACGT	4 cut(s)	48, 341, 827, 970
Kpn2I	TCCGGA	1 cut(s)	489
Ksp22I	TGATCA	3 cut(s)	120, 672, 712
KspAI	GTTAAC	1 cut(s)	877
Kzo9I	GATC	5 cut(s)	120, 672, 712, 822, 940
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	4 cut(s)	495, 571, 850, 1089
MaeI	CTAG	4 cut(s)	174, 836, 995, 1076
MaeII	ACGT	4 cut(s)	48, 341, 827, 970
MaeIII	GTNAC	5 cut(s)	269, 433, 508, 732, 851
MalI	GATC	5 cut(s)	122, 674, 714, 824, 942
MboI	GATC	5 cut(s)	120, 672, 712, 822, 940
MboII	GAAGA	4 cut(s)	76, 79, 618, 1085
MfeI	CAATTG	1 cut(s)	759
MhlI	GDGCHC	2 cut(s)	918, 1132
MluCI	AATT	4 cut(s)	86, 230, 759, 988
MlyI	GAGTC	2 cut(s)	1007, 1028
MmeI	TCCRAC	1 cut(s)	1062
MroI	TCCGGA	1 cut(s)	489
MseI	TTAA	2 cut(s)	264, 876
MslI	CAYNNNNRTG	4 cut(s)	668, 844, 923, 950
MspI	CCGG	5 cut(s)	156, 162, 444, 453, 490
MspR9I	CCNGG	4 cut(s)	42, 413, 547, 667
MunI	CAATTG	1 cut(s)	759
Mva1269I	GAATGC	1 cut(s)	606
MvaI	CCWGG	4 cut(s)	42, 413, 547, 667
MwoI	GCNNNNNNNGC	1 cut(s)	1165
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	5 cut(s)	120, 672, 712, 822, 940
NlaIV	GGNNCC	1 cut(s)	160
NmuCI	GTSAC	3 cut(s)	269, 433, 851
NspI	RCATGY	2 cut(s)	113, 875
OliI	CACNNNNGTG	1 cut(s)	668
PagI	TCATGA	1 cut(s)	675
PasI	CCCWGGG	1 cut(s)	41
PctI	GAATGC	1 cut(s)	606
PfeI	GAWTC	4 cut(s)	278, 403, 462, 517
PfoI	TCCNGGA	1 cut(s)	411
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	1006, 1028
PpsI	GAGTC	2 cut(s)	1006, 1028
PshBI	ATTAAT	1 cut(s)	264
Psp6I	CCWGG	4 cut(s)	40, 411, 545, 665
PspGI	CCWGG	4 cut(s)	40, 411, 545, 665
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	2 cut(s)	153, 368
PstI	CTGCAG	1 cut(s)	817
RsaI	GTAC	2 cut(s)	531, 1012
RsaNI	GTAC	2 cut(s)	530, 1011
RseI	CAYNNNNRTG	4 cut(s)	668, 844, 923, 950
SaqAI	TTAA	2 cut(s)	264, 876
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	5 cut(s)	120, 672, 712, 822, 940
Sau96I	GGNCC	2 cut(s)	153, 368
SchI	GAGTC	2 cut(s)	1007, 1028
ScrFI	CCNGG	4 cut(s)	42, 413, 547, 667
SduI	GDGCHC	2 cut(s)	918, 1132
SfaNI	GCATC	4 cut(s)	495, 571, 850, 1089
SfcI	CTRYAG	2 cut(s)	765, 813
SinI	GGWCC	1 cut(s)	368
SmiMI	CAYNNNNRTG	4 cut(s)	668, 844, 923, 950
SmlI	CTYRAG	1 cut(s)	636
SmoI	CTYRAG	1 cut(s)	636
Sse9I	AATT	4 cut(s)	86, 230, 759, 988
SspMI	CTAG	4 cut(s)	174, 836, 995, 1076
StyD4I	CCNGG	4 cut(s)	40, 411, 545, 665
StyI	CCWWGG	1 cut(s)	387
TaiI	ACGT	4 cut(s)	51, 344, 830, 973
TaqI	TCGA	3 cut(s)	561, 567, 792
TasI	AATT	4 cut(s)	86, 230, 759, 988
TatI	WGTACW	2 cut(s)	529, 1010
TfiI	GAWTC	4 cut(s)	278, 403, 462, 517
Tru1I	TTAA	2 cut(s)	264, 876
Tru9I	TTAA	2 cut(s)	264, 876
TseFI	GTSAC	3 cut(s)	269, 433, 851
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	3 cut(s)	269, 433, 851
TspDTI	ATGAA	3 cut(s)	203, 416, 692
TspGWI	ACGGA	2 cut(s)	529, 612
VpaK11BI	GGWCC	1 cut(s)	368
VspI	ATTAAT	1 cut(s)	264
XapI	RAATTY	1 cut(s)	988
XceI	RCATGY	2 cut(s)	113, 875
XmiI	GTMKAC	1 cut(s)	1066
XspI	CTAG	4 cut(s)	174, 836, 995, 1076

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.