Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0013671

Physical Location & Seq

Genomic Coordinates Forward (+)

9156009 .. 9158824

Gene Structure 2816 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG107600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGCAGCAAGAATTAATGCGACGCTATACCTTCCAAGGCACATTTTCAAGGCGGAGAAGAATGACAGCATTGATGTGGCCACCCAAATGGGATTTTATCCTTCGAGGGATAGGGCAACGAACACAAGACAACACCGCAGATTTTCGGTCATGGCTAGTAGTTCTGTTAATCCGAGAAGTCATGTGGACATGATCAATGGAAAGAAGGTTAATGGGATTCATGTGGAAGAGGCTGGTTCATTGTTAGGAAACATGAGTAGTGGTATTGAATTAGTTAAAGATAGAGGTAGTGATGCATCTCTTCATTCATGTTTACATGGGAAATTCGTGGAGGATAGGTTTGTATATAGGCAGACATTCGTTATAAGGTCTTATGAGATTGGTCCTGACAAAACTGCCACCATGGAGACACTGATGAACCTTCTACAGGAGACAGCTCTGAATCACGTGACAGGTTCTGGCCTTGCCGGAAATGGTTTCGGGGCTACTCGTGAGATGAGCCTCCGGAAACTTATTTGGGTCGTCACACGAGTCCACATTCAAGTTGAGAGATACAGTCGCTGGGGAGATGTTGTGGAAATTGATACTTGGGTGGATGCAGCAGGCAAAAACGGAATGCGCAGGGATTGGATTATCCGAGACTATCATACTCAAGAAATTATTAGCAGAGCAACAAGCACTTGGGTGATAATGAATAGAGAAACAAGAAGGTTGTCCAAGATTCCTGAACAAGTGAGACAAGAGGTGGCGCCTTTCTACCTAAACAGAGCTGCAATTGCCACTGAGAAAATCGATAGTGAGAAAATTGACAAGCTTACTGATGGAACTGCCGGGAGAATCCGATCAGGCTTAGCACCTAGATGGAGTGACATGGATGCCAACCAGCATGTAAACAATGTGAAATACATTGGATGGATTCTTGAGAGCGTGCCACTCAAAGTGTTAAAAGAATATGACATGACAAGTATGACACTGGAGTTCCGAAGAGAATGTAGGCAATCCAATTTGCTAGAATCATTGACGAGCACAACAGCAAGTTTGGCTCATGAACATCACTGCAACAACAGCAACAACAACTCGATCAATCGCAGACCAGACCTCCAGTACACACACCTGCTTCGGATGCAAGCCGATAAAGCAGAGATAGTGCGAGCAAGAACAGAATGGCATGGCAAACAAAAACATAAATCGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko01100 ko01212 map00061 map01100 map01212

Pfam Domains

Protein Families

Acyl-ACP_TE

Protein Analysis

398

Amino Acids

45.52

Weight (kDa)

9.53

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyl-ACP_TE	PF01643	115 - 248	7.1e-37	Acyl-ACP thioesterase N-terminal domain
Acyl-ACP_TE_C	PF20791	281 - 390	4.2e-23	Acyl-ACP thioesterase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013671)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08660
malus_domestica	MD06G1138100.v1.1 MD14G1153700.v1.1
prunus_persica	Prupe.5G148400_v2.0.a1
pyrus_communis	pycom06g12930 pycom06g12940 pycom14g12780 pycom14g12790
rosa_chinensis	RchiOBHm_Chr7g0189721
rosa_laevigata	RLG00000004595
rosa_multiflora	Rmu_sc0001924.1_g000022
rosa_roxburghii	Rroxscaffold_3G00265230
rosa_rugosa	Rorug06G0499300
rosa_samantha	Rh7AG104600 Rh7BG107000 Rh7CG109100 Rh7DG107600
rosa_wichuraiana	Rw7G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	365
AarI	CACCTGC	1 cut(s)	1122
Acc16I	TGCGCA	1 cut(s)	620
Acc36I	ACCTGC	1 cut(s)	1122
AccB1I	GGYRCC	1 cut(s)	748
AccIII	TCCGGA	1 cut(s)	504
AciI	CCGC	2 cut(s)	53, 136
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	323
AcvI	CACGTG	1 cut(s)	448
AcyI	GRCGYC	1 cut(s)	749
AfaI	GTAC	1 cut(s)	1106
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgsI	TTSAA	3 cut(s)	49, 269, 542
AleI	CACNNNNGTG	1 cut(s)	683
AluBI	AGCT	3 cut(s)	437, 770, 814
AluI	AGCT	3 cut(s)	437, 770, 814
Alw21I	GWGCWC	1 cut(s)	1028
Alw26I	GTCTC	4 cut(s)	401, 425, 633, 730
AlwNI	CAGNNNCTG	2 cut(s)	458, 561
Aor13HI	TCCGGA	1 cut(s)	504
AoxI	GGCC	2 cut(s)	78, 460
ApeKI	GCWGC	3 cut(s)	5, 599, 770
ApoI	RAATTY	1 cut(s)	323
AseI	ATTAAT	1 cut(s)	15
AspLEI	GCGC	2 cut(s)	621, 751
AspS9I	GGNCC	1 cut(s)	383
AsuC2I	CCSGG	1 cut(s)	832
AsuHPI	GGTGA	1 cut(s)	697
AvaII	GGWCC	1 cut(s)	383
BaeI	ACNNNNGTAYC	2 cut(s)	576, 609
BalI	TGGCCA	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	748
BauI	CACGAG	2 cut(s)	489, 528
BbrPI	CACGTG	1 cut(s)	448
Bbv12I	GWGCWC	1 cut(s)	1028
BbvI	GCAGC	3 cut(s)	17, 611, 757
BccI	CCATC	3 cut(s)	815, 855, 906
BclI	TGATCA	1 cut(s)	192
BcnI	CCSGG	1 cut(s)	832
BcoDI	GTCTC	4 cut(s)	401, 425, 633, 730
BfaI	CTAG	3 cut(s)	156, 858, 1010
BfmI	CTRYAG	1 cut(s)	425
BfoI	RGCGCY	1 cut(s)	752
BfuAI	ACCTGC	1 cut(s)	1122
BisI	GCNGC	3 cut(s)	6, 600, 771
BlpI	GCTNAGC	1 cut(s)	850
BlsI	GCNGC	3 cut(s)	7, 601, 772
Bme1390I	CCNGG	1 cut(s)	832
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	1 cut(s)	750
BmrFI	CCNGG	1 cut(s)	832
BmsI	GCATC	5 cut(s)	283, 305, 586, 865, 1113
BpmI	CTGGAG	2 cut(s)	995, 1085
Bpu1102I	GCTNAGC	1 cut(s)	850
BpuEI	CTTGAG	2 cut(s)	636, 941
BpuMI	CCSGG	1 cut(s)	832
Bsa29I	ATCGAT	1 cut(s)	792
BsaAI	YACGTR	1 cut(s)	448
BsaHI	GRCGYC	1 cut(s)	749
BsaJI	CCNNGG	2 cut(s)	35, 402
BsaWI	WCCGGW	1 cut(s)	504
BsaXI	ACNNNNNCTCC	6 cut(s)	323, 353, 558, 588, 1083, 1113
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse1I	ACTGG	2 cut(s)	978, 1102
BseAI	TCCGGA	1 cut(s)	504
BseCI	ATCGAT	1 cut(s)	792
BseDI	CCNNGG	2 cut(s)	35, 402
BseGI	GGATG	4 cut(s)	601, 880, 917, 1128
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMII	CTCAG	1 cut(s)	774
BseNI	ACTGG	2 cut(s)	978, 1102
BseXI	GCAGC	3 cut(s)	17, 611, 757
BseYI	CCCAGC	1 cut(s)	561
BshFI	GGCC	2 cut(s)	80, 462
BshNI	GGYRCC	1 cut(s)	748
BshVI	ATCGAT	1 cut(s)	792
BsiHKAI	GWGCWC	1 cut(s)	1028
BsiSI	CCGG	3 cut(s)	468, 505, 831
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	4 cut(s)	401, 425, 633, 730
BsmI	GAATGC	1 cut(s)	621
BsnI	GGCC	2 cut(s)	80, 462
Bsp1286I	GDGCHC	1 cut(s)	1028
Bsp13I	TCCGGA	1 cut(s)	504
Bsp143I	GATC	3 cut(s)	192, 842, 1080
Bsp1720I	GCTNAGC	1 cut(s)	850
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	2 cut(s)	53, 136
BspANI	GGCC	2 cut(s)	80, 462
BspCNI	CTCAG	1 cut(s)	775
BspDI	ATCGAT	1 cut(s)	792
BspEI	TCCGGA	1 cut(s)	504
BspHI	TCATGA	1 cut(s)	1045
BspLI	GGNNCC	1 cut(s)	750
BspMI	ACCTGC	1 cut(s)	1122
BspT107I	GGYRCC	1 cut(s)	748
BsrI	ACTGG	2 cut(s)	978, 1102
BssECI	CCNNGG	2 cut(s)	35, 402
BssMI	GATC	3 cut(s)	192, 842, 1080
BssNI	GRCGYC	1 cut(s)	749
BssSI	CACGAG	2 cut(s)	489, 528
BssT1I	CCWWGG	2 cut(s)	35, 402
Bst2BI	CACGAG	2 cut(s)	489, 528
Bst4CI	ACNGT	1 cut(s)	557
Bst6I	CTCTTC	3 cut(s)	222, 306, 979
BstACI	GRCGYC	1 cut(s)	749
BstBAI	YACGTR	1 cut(s)	448
BstC8I	GCNNGC	4 cut(s)	604, 929, 1128, 1152
BstDEI	CTNAG	2 cut(s)	783, 850
BstDSI	CCRYGG	1 cut(s)	402
BstENI	CCTNNNNNAGG	1 cut(s)	425
BstF5I	GGATG	4 cut(s)	601, 880, 917, 1128
BstH2I	RGCGCY	1 cut(s)	752
BstHHI	GCGC	2 cut(s)	621, 751
BstKTI	GATC	3 cut(s)	195, 845, 1083
BstMAI	GTCTC	4 cut(s)	401, 425, 633, 730
BstMBI	GATC	3 cut(s)	192, 842, 1080
BstMWI	GCNNNNNNNGC	5 cut(s)	776, 1040, 1065, 1123, 1136
BstNSI	RCATGY	1 cut(s)	890
BstSCI	CCNGG	1 cut(s)	830
BstSFI	CTRYAG	1 cut(s)	425
BstV1I	GCAGC	3 cut(s)	17, 611, 757
BstXI	CCANNNNNNTGG	1 cut(s)	88
Bsu15I	ATCGAT	1 cut(s)	792
BsuRI	GGCC	2 cut(s)	80, 462
BsuTUI	ATCGAT	1 cut(s)	792
BtgI	CCRYGG	1 cut(s)	402
BtsCI	GGATG	4 cut(s)	601, 880, 917, 1128
BtsI	GCAGTG	1 cut(s)	1054
BtsIMutI	CAGTG	4 cut(s)	410, 780, 971, 1054
BveI	ACCTGC	1 cut(s)	1122
Cac8I	GCNNGC	4 cut(s)	604, 929, 1128, 1152
CaiI	CAGNNNCTG	2 cut(s)	458, 561
CciI	TCATGA	1 cut(s)	1045
CfoI	GCGC	2 cut(s)	621, 751
Cfr13I	GGNCC	1 cut(s)	383
ClaI	ATCGAT	1 cut(s)	792
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	1105
CviQI	GTAC	1 cut(s)	1105
DdeI	CTNAG	2 cut(s)	783, 850
DinI	GGCGCC	1 cut(s)	750
DpnI	GATC	3 cut(s)	194, 844, 1082
DpnII	GATC	3 cut(s)	192, 842, 1080
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	3 cut(s)	222, 306, 979
EarI	CTCTTC	3 cut(s)	222, 306, 979
EciI	GGCGGA	1 cut(s)	68
Eco130I	CCWWGG	2 cut(s)	35, 402
Eco47I	GGWCC	1 cut(s)	383
Eco72I	CACGTG	1 cut(s)	448
EcoNI	CCTNNNNNAGG	1 cut(s)	425
EcoT14I	CCWWGG	2 cut(s)	35, 402
EcoT22I	ATGCAT	1 cut(s)	298
EgeI	GGCGCC	1 cut(s)	750
EheI	GGCGCC	1 cut(s)	750
ErhI	CCWWGG	2 cut(s)	35, 402
FbaI	TGATCA	1 cut(s)	192
Fnu4HI	GCNGC	3 cut(s)	6, 600, 771
FokI	GGATG	4 cut(s)	608, 887, 924, 1135
Fsp4HI	GCNGC	3 cut(s)	6, 600, 771
FspBI	CTAG	3 cut(s)	156, 858, 1010
FspI	TGCGCA	1 cut(s)	620
GlaI	GCGC	2 cut(s)	620, 750
GluI	GCNGC	3 cut(s)	6, 600, 771
GsaI	CCCAGC	1 cut(s)	565
GsuI	CTGGAG	2 cut(s)	995, 1085
HaeII	RGCGCY	1 cut(s)	752
HaeIII	GGCC	2 cut(s)	80, 462
HapII	CCGG	3 cut(s)	468, 505, 831
HgaI	GACGC	1 cut(s)	31
HhaI	GCGC	2 cut(s)	621, 751
Hin1I	GRCGYC	1 cut(s)	749
Hin6I	GCGC	2 cut(s)	619, 749
HinP1I	GCGC	2 cut(s)	619, 749
HindIII	AAGCTT	1 cut(s)	812
HinfI	GANTC	7 cut(s)	217, 442, 531, 721, 837, 916, 1013
HpaII	CCGG	3 cut(s)	468, 505, 831
HphI	GGTGA	1 cut(s)	697
Hpy166II	GTNNAC	5 cut(s)	187, 314, 535, 892, 1107
Hpy188I	TCNGA	6 cut(s)	174, 441, 638, 842, 983, 1122
Hpy188III	TCNNGA	7 cut(s)	386, 491, 505, 653, 725, 920, 1046
Hpy8I	GTNNAC	5 cut(s)	187, 314, 535, 892, 1107
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	5 cut(s)	41, 111, 199, 431, 702
HpyCH4III	ACNGT	1 cut(s)	557
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	5 cut(s)	296, 599, 773, 1059, 1126
HpyF10VI	GCNNNNNNNGC	5 cut(s)	776, 1040, 1065, 1123, 1136
HpyF3I	CTNAG	2 cut(s)	783, 850
HpySE526I	ACGT	1 cut(s)	447
Hsp92I	GRCGYC	1 cut(s)	749
HspAI	GCGC	2 cut(s)	619, 749
KasI	GGCGCC	1 cut(s)	748
Kpn2I	TCCGGA	1 cut(s)	504
Ksp22I	TGATCA	1 cut(s)	192
Kzo9I	GATC	3 cut(s)	192, 842, 1080
Lsp1109I	GCAGC	3 cut(s)	17, 611, 757
LweI	GCATC	5 cut(s)	283, 305, 586, 865, 1113
MaeI	CTAG	3 cut(s)	156, 858, 1010
MaeII	ACGT	1 cut(s)	447
MaeIII	GTNAC	3 cut(s)	448, 523, 866
MalI	GATC	3 cut(s)	194, 844, 1082
MboI	GATC	3 cut(s)	192, 842, 1080
MboII	GAAGA	4 cut(s)	70, 239, 293, 996
MfeI	CAATTG	1 cut(s)	774
MhlI	GDGCHC	1 cut(s)	1028
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	9 cut(s)	12, 269, 323, 579, 657, 774, 804, 1003, 1192
MluNI	TGGCCA	1 cut(s)	80
Mly113I	GGCGCC	1 cut(s)	749
MlyI	GAGTC	1 cut(s)	540
MnlI	CCTC	7 cut(s)	99, 223, 278, 325, 512, 736, 1109
Mox20I	TGGCCA	1 cut(s)	80
Mph1103I	ATGCAT	1 cut(s)	298
MroI	TCCGGA	1 cut(s)	504
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	5 cut(s)	15, 168, 210, 276, 944
MslI	CAYNNNNRTG	4 cut(s)	74, 86, 683, 859
Msp20I	TGGCCA	1 cut(s)	80
MspI	CCGG	3 cut(s)	468, 505, 831
MspR9I	CCNGG	1 cut(s)	832
MunI	CAATTG	1 cut(s)	774
Mva1269I	GAATGC	1 cut(s)	621
MwoI	GCNNNNNNNGC	5 cut(s)	776, 1040, 1065, 1123, 1136
NarI	GGCGCC	1 cut(s)	749
NciI	CCSGG	1 cut(s)	832
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	3 cut(s)	192, 842, 1080
NlaIV	GGNNCC	1 cut(s)	750
NmuCI	GTSAC	3 cut(s)	448, 523, 866
NsbI	TGCGCA	1 cut(s)	620
NsiI	ATGCAT	1 cut(s)	298
NspI	RCATGY	1 cut(s)	890
OliI	CACNNNNGTG	1 cut(s)	683
PagI	TCATGA	1 cut(s)	1045
PaqCI	CACCTGC	1 cut(s)	1122
PctI	GAATGC	1 cut(s)	621
PfeI	GAWTC	6 cut(s)	217, 442, 721, 837, 916, 1013
PkrI	GCNGC	3 cut(s)	7, 601, 772
PleI	GAGTC	1 cut(s)	539
PluTI	GGCGCC	1 cut(s)	752
PmaCI	CACGTG	1 cut(s)	448
PmlI	CACGTG	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	539
Ppu21I	YACGTR	1 cut(s)	448
PshBI	ATTAAT	1 cut(s)	15
PsiI	TTATAA	1 cut(s)	365
PspCI	CACGTG	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	561
PspN4I	GGNNCC	1 cut(s)	750
PspPI	GGNCC	1 cut(s)	383
PstNI	CAGNNNCTG	2 cut(s)	458, 561
RsaI	GTAC	1 cut(s)	1106
RsaNI	GTAC	1 cut(s)	1105
RseI	CAYNNNNRTG	4 cut(s)	74, 86, 683, 859
SaqAI	TTAA	5 cut(s)	15, 168, 210, 276, 944
SatI	GCNGC	3 cut(s)	6, 600, 771
Sau3AI	GATC	3 cut(s)	192, 842, 1080
Sau96I	GGNCC	1 cut(s)	383
SchI	GAGTC	1 cut(s)	540
ScrFI	CCNGG	1 cut(s)	832
SduI	GDGCHC	1 cut(s)	1028
SfaNI	GCATC	5 cut(s)	283, 305, 586, 865, 1113
SfcI	CTRYAG	1 cut(s)	425
SfoI	GGCGCC	1 cut(s)	750
SinI	GGWCC	1 cut(s)	383
SmiMI	CAYNNNNRTG	4 cut(s)	74, 86, 683, 859
SmlI	CTYRAG	2 cut(s)	651, 920
SmoI	CTYRAG	2 cut(s)	651, 920
Sse9I	AATT	9 cut(s)	12, 269, 323, 579, 657, 774, 804, 1003, 1192
SsiI	CCGC	2 cut(s)	53, 136
SspDI	GGCGCC	1 cut(s)	748
SspMI	CTAG	3 cut(s)	156, 858, 1010
StyD4I	CCNGG	1 cut(s)	830
StyI	CCWWGG	2 cut(s)	35, 402
TaaI	ACNGT	1 cut(s)	557
TaiI	ACGT	1 cut(s)	450
TaqI	TCGA	4 cut(s)	104, 792, 1079, 1190
TaqII	GACCGA	1 cut(s)	136
TasI	AATT	9 cut(s)	12, 269, 323, 579, 657, 774, 804, 1003, 1192
TatI	WGTACW	1 cut(s)	1104
TfiI	GAWTC	6 cut(s)	217, 442, 721, 837, 916, 1013
Tru1I	TTAA	5 cut(s)	15, 168, 210, 276, 944
Tru9I	TTAA	5 cut(s)	15, 168, 210, 276, 944
TscAI	CASTG	4 cut(s)	417, 787, 978, 1061
TseFI	GTSAC	3 cut(s)	448, 523, 866
TseI	GCWGC	3 cut(s)	5, 599, 770
Tsp45I	GTSAC	3 cut(s)	448, 523, 866
TspDTI	ATGAA	7 cut(s)	209, 228, 293, 297, 431, 707, 1062
TspGWI	ACGGA	1 cut(s)	627
TspRI	CASTG	4 cut(s)	417, 787, 978, 1061
VpaK11BI	GGWCC	1 cut(s)	383
VspI	ATTAAT	1 cut(s)	15
XagI	CCTNNNNNAGG	1 cut(s)	425
XapI	RAATTY	1 cut(s)	323
XceI	RCATGY	1 cut(s)	890
XspI	CTAG	3 cut(s)	156, 858, 1010
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.