Rorug06G0499300

Plays an essential role in chain termination during de novo fatty acid synthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013671
Physical Location & Seq
Reverse (-)
61481204 .. 61484553
3350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0499300.1

Sequence Viewer

Length: 978 bp
ATGGCTGACTATAACAGATCAAAGTCCTATGGTGGCAGTGGGACTATGCAGATGGATAACTACTATGGACCCCCAAGAGCACCACCCAGTTCTTATGAGATCAGGAGTTACAGTGTTTCCTATGCACAGGCCCAGATGGGGAATTATAATTACAACAACAGGGATTTGAAGAAGGGGAAGACTCATTCTAGGTCAAAGTCTTCTTCTTGGGCTCTGGCTGATCCTGAGTTGCAGAGGAAGAAGAGGGTTGCTAGCTACAAGATGTATTCTGTTGAAGGAAAGGTGAAGGGCTCCTTCAGAAACAGCTTCAGATGGCTTAAGGCAATTCAAAACATTATGGAGAAAGTCCATCCTAAATTAGAAGTCAAAATCAAAGAGGCTAAGAAGCTGATTGCAAAGATGGCTCAAGATAATCTTCAGTTCACTTATACATTAGAAGAAAAGATATTTGATGAGTTCTCTTTGGAGTCGTGGTTGCGATACCTGAATGCCCAGAAAGACCGTCTCAAATATTTATTGATCAAGGAGATGAAGAAAATGGATCTATTGCAAATACTGGTAGACAAGATTCGTTGCACTGACAACACCTACCAAAAAAATTCAATTAAGGAATGCTTGTCAGCACAAGAAATGAATAATCATAAATTGCATTGCCAGATGGTACATGGAAGCAAGAGTTTGAGAAAGGAAAAGCAGCTTTTGGAAGATATGAAACTGAGCCAGCAGGAGGATAAGTTTGTTTCATTTTGGACTCAATTGGAAGAACAACTTGGTGTTTATCATGCTGATTGGCGCTTCGATCCAATGAAACAGATTTTGTTGTTGCATCACCAGATGCCAGTTTTGATCATTACAGGAGATGCAGTTAAAGAACGCATACTAGAATTCAGAGATCTTGAATGGAGAATACAAAGTTGTGGAGTTGTACTGCGAAATGAATATGAAGCCATTCCTATTAATAATGTGAATGGTAACTAA

Protein Analysis

325

Amino Acids

38.28

Weight (kDa)

9.38

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 73 - 108 7e-21 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013671)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g08660
malus_domestica MD06G1138100.v1.1 MD14G1153700.v1.1
prunus_persica Prupe.5G148400_v2.0.a1
pyrus_communis pycom06g12930 pycom06g12940 pycom14g12780 pycom14g12790
rosa_chinensis RchiOBHm_Chr7g0189721
rosa_laevigata RLG00000004595
rosa_multiflora Rmu_sc0001924.1_g000022
rosa_roxburghii Rroxscaffold_3G00265230
rosa_rugosa Rorug06G0499300
rosa_samantha Rh7AG104600 Rh7BG107000 Rh7CG109100 Rh7DG107600
rosa_wichuraiana Rw7G009050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 147
AccI GTMKAC 1 cut(s) 561
AclWI GGATC 3 cut(s) 215, 549, 794
AcsI RAATTY 2 cut(s) 598, 884
AcuI CTGAAG 3 cut(s) 280, 292, 401
AfaI GTAC 2 cut(s) 663, 927
AfiI CCNNNNNNNGG 2 cut(s) 138, 727
AflII CTTAAG 1 cut(s) 317
AgsI TTSAA 5 cut(s) 169, 275, 329, 603, 899
AjuI GAANNNNNNNTTGG 2 cut(s) 753, 785
AluBI AGCT 4 cut(s) 255, 306, 388, 697
AluI AGCT 4 cut(s) 255, 306, 388, 697
Alw21I GWGCWC 1 cut(s) 82
Alw26I GTCTC 1 cut(s) 509
AlwI GGATC 3 cut(s) 215, 549, 794
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 694
ApoI RAATTY 2 cut(s) 598, 884
AseI ATTAAT 1 cut(s) 957
Asp700I GAANNNNTTC 1 cut(s) 948
AspLEI GCGC 1 cut(s) 795
AspS9I GGNCC 2 cut(s) 68, 130
AsuHPI GGTGA 2 cut(s) 295, 821
AsuNHI GCTAGC 1 cut(s) 251
AvaII GGWCC 1 cut(s) 68
BanII GRGCYC 2 cut(s) 214, 293
BbsI GAAGAC 2 cut(s) 185, 192
Bbv12I GWGCWC 1 cut(s) 82
BbvI GCAGC 1 cut(s) 706
BccI CCATC 6 cut(s) 46, 130, 306, 357, 394, 652
BclI TGATCA 2 cut(s) 519, 846
BcoDI GTCTC 1 cut(s) 509
BfaI CTAG 3 cut(s) 189, 252, 881
BfoI RGCGCY 1 cut(s) 796
BfrI CTTAAG 1 cut(s) 317
BglII AGATCT 1 cut(s) 892
BisI GCNGC 1 cut(s) 695
BlsI GCNGC 1 cut(s) 696
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 2 cut(s) 68, 130
BmiI GGNNCC 2 cut(s) 70, 292
BmrI ACTGGG 1 cut(s) 81
BmsI GCATC 3 cut(s) 825, 835, 850
BmtI GCTAGC 1 cut(s) 255
BmuI ACTGGG 1 cut(s) 81
BpiI GAAGAC 2 cut(s) 185, 192
BpuEI CTTGAG 1 cut(s) 390
BsaXI ACNNNNNCTCC 8 cut(s) 97, 127, 458, 488, 719, 749, 849, 879
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 727
Bse1I ACTGG 3 cut(s) 87, 561, 839
Bse3DI GCAATG 1 cut(s) 649
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 2 cut(s) 138, 727
BseMI GCAATG 1 cut(s) 649
BseMII CTCAG 2 cut(s) 216, 707
BseNI ACTGG 3 cut(s) 87, 561, 839
BseXI GCAGC 1 cut(s) 706
BshFI GGCC 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 82
BslFI GGGAC 1 cut(s) 55
BslI CCNNNNNNNGG 2 cut(s) 138, 727
BsmAI GTCTC 1 cut(s) 509
BsmBI CGTCTC 1 cut(s) 509
BsmFI GGGAC 1 cut(s) 55
BsmI GAATGC 2 cut(s) 493, 617
BsnI GGCC 1 cut(s) 131
Bsp1286I GDGCHC 3 cut(s) 82, 214, 293
Bsp143I GATC 8 cut(s) 17, 99, 220, 519, 541, 799, 846, 892
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 2 cut(s) 217, 708
BspLI GGNNCC 2 cut(s) 70, 292
BspOI GCTAGC 1 cut(s) 255
BspPI GGATC 3 cut(s) 215, 549, 794
BspTI CTTAAG 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 649
BsrI ACTGG 3 cut(s) 87, 561, 839
BssMI GATC 8 cut(s) 17, 99, 220, 519, 541, 799, 846, 892
Bst4CI ACNGT 2 cut(s) 113, 503
Bst6I CTCTTC 1 cut(s) 236
BstAFI CTTAAG 1 cut(s) 317
BstC8I GCNNGC 2 cut(s) 253, 722
BstDEI CTNAG 3 cut(s) 225, 381, 716
BstF5I GGATG 1 cut(s) 349
BstH2I RGCGCY 1 cut(s) 796
BstHHI GCGC 1 cut(s) 795
BstKTI GATC 8 cut(s) 20, 102, 223, 522, 544, 802, 849, 895
BstMAI GTCTC 1 cut(s) 509
BstMBI GATC 8 cut(s) 17, 99, 220, 519, 541, 799, 846, 892
BstMWI GCNNNNNNNGC 1 cut(s) 401
BstV1I GCAGC 1 cut(s) 706
BstV2I GAAGAC 2 cut(s) 185, 192
BstX2I RGATCY 2 cut(s) 541, 892
BstYI RGATCY 2 cut(s) 541, 892
BsuRI GGCC 1 cut(s) 131
BtsCI GGATG 1 cut(s) 349
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 3 cut(s) 43, 118, 576
Cac8I GCNNGC 2 cut(s) 253, 722
CfoI GCGC 1 cut(s) 795
Cfr13I GGNCC 2 cut(s) 68, 130
Csp6I GTAC 2 cut(s) 662, 926
CviAII CATG 2 cut(s) 665, 782
CviQI GTAC 2 cut(s) 662, 926
DdeI CTNAG 3 cut(s) 225, 381, 716
DpnI GATC 8 cut(s) 19, 101, 222, 521, 543, 801, 848, 894
DpnII GATC 8 cut(s) 17, 99, 220, 519, 541, 799, 846, 892
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Eco24I GRGCYC 2 cut(s) 214, 293
Eco47I GGWCC 1 cut(s) 68
Eco57I CTGAAG 3 cut(s) 280, 292, 401
EcoRI GAATTC 1 cut(s) 884
EcoT38I GRGCYC 2 cut(s) 214, 293
Esp3I CGTCTC 1 cut(s) 509
FaeI CATG 2 cut(s) 668, 785
FalI AAGNNNNNCTT 8 cut(s) 278, 310, 399, 431, 599, 631, 753, 785
FaqI GGGAC 1 cut(s) 55
FatI CATG 2 cut(s) 664, 781
FbaI TGATCA 2 cut(s) 519, 846
FblI GTMKAC 1 cut(s) 561
Fnu4HI GCNGC 1 cut(s) 695
FokI GGATG 1 cut(s) 336
FriOI GRGCYC 2 cut(s) 214, 293
Fsp4HI GCNGC 1 cut(s) 695
FspBI CTAG 3 cut(s) 189, 252, 881
GlaI GCGC 1 cut(s) 794
GluI GCNGC 1 cut(s) 695
HaeII RGCGCY 1 cut(s) 796
HaeIII GGCC 1 cut(s) 131
HhaI GCGC 1 cut(s) 795
Hin1II CATG 2 cut(s) 668, 785
Hin6I GCGC 1 cut(s) 793
HinP1I GCGC 1 cut(s) 793
HinfI GANTC 4 cut(s) 181, 467, 568, 751
HphI GGTGA 2 cut(s) 295, 821
Hpy166II GTNNAC 2 cut(s) 423, 562
Hpy188I TCNGA 3 cut(s) 299, 311, 890
Hpy188III TCNNGA 4 cut(s) 103, 224, 407, 896
Hpy8I GTNNAC 2 cut(s) 423, 562
HpyAV CCTTC 4 cut(s) 166, 269, 280, 304
HpyCH4III ACNGT 2 cut(s) 113, 503
HpyCH4V TGCA 9 cut(s) 49, 125, 232, 395, 550, 576, 649, 826, 863
HpyF10VI GCNNNNNNNGC 1 cut(s) 401
HpyF3I CTNAG 3 cut(s) 225, 381, 716
Hsp92II CATG 2 cut(s) 668, 785
HspAI GCGC 1 cut(s) 793
Ksp22I TGATCA 2 cut(s) 519, 846
Kzo9I GATC 8 cut(s) 17, 99, 220, 519, 541, 799, 846, 892
LmnI GCTCC 1 cut(s) 296
Lsp1109I GCAGC 1 cut(s) 706
LweI GCATC 3 cut(s) 825, 835, 850
MaeI CTAG 3 cut(s) 189, 252, 881
MaeIII GTNAC 2 cut(s) 107, 971
MalI GATC 8 cut(s) 19, 101, 222, 521, 543, 801, 848, 894
MboI GATC 8 cut(s) 17, 99, 220, 519, 541, 799, 846, 892
MfeI CAATTG 1 cut(s) 755
MflI RGATCY 2 cut(s) 541, 892
MhlI GDGCHC 3 cut(s) 82, 214, 293
MluCI AATT 9 cut(s) 142, 148, 324, 356, 598, 603, 644, 755, 884
MlyI GAGTC 3 cut(s) 175, 476, 745
MnlI CCTC 4 cut(s) 228, 237, 370, 721
MroXI GAANNNNTTC 1 cut(s) 948
MseI TTAA 4 cut(s) 318, 606, 867, 957
MspCI CTTAAG 1 cut(s) 317
MunI CAATTG 1 cut(s) 755
Mva1269I GAATGC 2 cut(s) 493, 617
MwoI GCNNNNNNNGC 1 cut(s) 401
NdeII GATC 8 cut(s) 17, 99, 220, 519, 541, 799, 846, 892
NheI GCTAGC 1 cut(s) 251
NlaIII CATG 2 cut(s) 668, 785
NlaIV GGNNCC 2 cut(s) 70, 292
PctI GAATGC 2 cut(s) 493, 617
PdmI GAANNNNTTC 1 cut(s) 948
PfeI GAWTC 1 cut(s) 568
PkrI GCNGC 1 cut(s) 696
PleI GAGTC 3 cut(s) 175, 475, 745
PpsI GAGTC 3 cut(s) 175, 475, 745
PshBI ATTAAT 1 cut(s) 957
PsiI TTATAA 1 cut(s) 147
PspN4I GGNNCC 2 cut(s) 70, 292
PspPI GGNCC 2 cut(s) 68, 130
PsuI RGATCY 2 cut(s) 541, 892
RsaI GTAC 2 cut(s) 663, 927
RsaNI GTAC 2 cut(s) 662, 926
SaqAI TTAA 4 cut(s) 318, 606, 867, 957
SatI GCNGC 1 cut(s) 695
Sau3AI GATC 8 cut(s) 17, 99, 220, 519, 541, 799, 846, 892
Sau96I GGNCC 2 cut(s) 68, 130
SchI GAGTC 3 cut(s) 175, 476, 745
SduI GDGCHC 3 cut(s) 82, 214, 293
SetI ASST 8 cut(s) 194, 257, 285, 308, 390, 486, 590, 699
SfaNI GCATC 3 cut(s) 825, 835, 850
SinI GGWCC 1 cut(s) 68
SmlI CTYRAG 2 cut(s) 317, 405
SmoI CTYRAG 2 cut(s) 317, 405
Sse9I AATT 9 cut(s) 142, 148, 324, 356, 598, 603, 644, 755, 884
SspI AATATT 1 cut(s) 512
SspMI CTAG 3 cut(s) 189, 252, 881
TaaI ACNGT 2 cut(s) 113, 503
TaqI TCGA 1 cut(s) 798
TasI AATT 9 cut(s) 142, 148, 324, 356, 598, 603, 644, 755, 884
TatI WGTACW 1 cut(s) 925
TfiI GAWTC 1 cut(s) 568
Tru1I TTAA 4 cut(s) 318, 606, 867, 957
Tru9I TTAA 4 cut(s) 318, 606, 867, 957
TscAI CASTG 3 cut(s) 43, 118, 583
TseI GCWGC 1 cut(s) 694
TspDTI ATGAA 7 cut(s) 545, 647, 725, 732, 821, 951, 957
TspRI CASTG 3 cut(s) 43, 118, 583
Vha464I CTTAAG 1 cut(s) 317
VpaK11BI GGWCC 1 cut(s) 68
VspI ATTAAT 1 cut(s) 957
XapI RAATTY 2 cut(s) 598, 884
XcmI CCANNNNNNNNNTGG 1 cut(s) 662
XmiI GTMKAC 1 cut(s) 561
XmnI GAANNNNTTC 1 cut(s) 948
XspI CTAG 3 cut(s) 189, 252, 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.