RLG00000004595

Plays an essential role in chain termination during de novo fatty acid synthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013671
Physical Location & Seq
Reverse (-)
60588961 .. 60590946
1986 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004595

Sequence Viewer

Length: 1203 bp
ATGGCATCAATGGCAGCGAGAATTAATGCGACGCTATACCTTCCAAGGCACATTTTCAAGGCGGAGAAGAATGACGGTATTGATGTGGCCACCCAAATGGGATTTTATCCTTCGAGGGATAGGGCAACGAACACAAGACAACATCGCAGATTTTCCGTCATGGCTAGTTCTGTTAATCCGAGAAGTCATGTGGACATGATCAATGGAAAGAAGGTTAATGGGATTCATGTGGAAGAGGCTGGTTCATTGTTAGGAAACATGAGTAGTGGTATTGAATTAGTTAAAGATAGAGGTAGTGATGCATCTCTTCATTCATGTTTACATGGGAAATTCGTGGAGGATAGGTTTGTATATAGGCAGACATTCGTTATAAGGTCTTATGAGATTGGTCCTGACAAAACTGCCACCATGGAGACACTGATGAACCTTCTACAGGAGACAGCTCTGAATCACGTGACAGGTTCTGGCCTTGCCGGAAATGGTTTCGGGGCTACTCGTGAGATGAGCCGCCGGAAACTTATTTGGGTCGTCACACGAGTCCACATTCAAGTTGAGAGATACAGTCGCTGGGGAGATGTTGTGGAAATTGATACTTGGGTGGATGCAGCAGGCAAAAACGGAATGCGCAGGGATTGGATTATCCGAGACTATCATACTCAAGAAATTATTAGCAGAGCAACAAGCACTTGGGTGATAATGAATAGAGAAACAAGAAGGTTGTCCAAGATTCCTGAACAAGTGAGACAAGAGGTGGCGCCTTTCTACCTAAACAGAGCTGCAATTGCCACTGAGAAAATCGATAGTGAGAAAATTGACAAGCTTACTGATGGAACTGCCGGGAGAATCCGATCAGGCTTAGCACCTAGATGGAGTGACATGGATGCCAACCAGCATGTAAACAATGTGAAATACATTGGATGGATTCTTGAGAGCGTGCCACTGAAAGTGTTAGAAGAATATGACATGACAAGCATGACACTGGAGTTCCGAAGAGAATGTAGGCAATCCAATTTGCTAGAATCATTGACGAGCACAACAGCAAGTTTGGCTCATGAACATCACTGCAACAACAGCAACAACAACTCGATCAATCGCAGACCAGACCTCCAGTACACACACCTGCTTCGGATGCAAGCCGATAAAGCAGAGATAGTGCGAGCAAGAACAGAATGGCATGGCAAACAAAAACATAAATCGCATTGA

Protein Analysis

401

Amino Acids

45.76

Weight (kDa)

9.47

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyl-ACP_TE PF01643 117 - 250 1.6e-37 Acyl-ACP thioesterase N-terminal domain
Acyl-ACP_TE_C PF20791 283 - 392 5.4e-23 Acyl-ACP thioesterase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013671)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g08660
malus_domestica MD06G1138100.v1.1 MD14G1153700.v1.1
prunus_persica Prupe.5G148400_v2.0.a1
pyrus_communis pycom06g12930 pycom06g12940 pycom14g12780 pycom14g12790
rosa_chinensis RchiOBHm_Chr7g0189721
rosa_laevigata RLG00000004595
rosa_multiflora Rmu_sc0001924.1_g000022
rosa_roxburghii Rroxscaffold_3G00265230
rosa_rugosa Rorug06G0499300
rosa_samantha Rh7AG104600 Rh7BG107000 Rh7CG109100 Rh7DG107600
rosa_wichuraiana Rw7G009050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 371
AarI CACCTGC 1 cut(s) 1128
Acc16I TGCGCA 1 cut(s) 626
Acc36I ACCTGC 1 cut(s) 1128
AccB1I GGYRCC 1 cut(s) 754
AciI CCGC 2 cut(s) 62, 508
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 1 cut(s) 329
AcvI CACGTG 1 cut(s) 454
AcyI GRCGYC 1 cut(s) 755
AfaI GTAC 1 cut(s) 1112
AfiI CCNNNNNNNGG 1 cut(s) 433
AgsI TTSAA 3 cut(s) 58, 275, 548
AleI CACNNNNGTG 1 cut(s) 689
AluBI AGCT 3 cut(s) 443, 776, 820
AluI AGCT 3 cut(s) 443, 776, 820
Alw21I GWGCWC 1 cut(s) 1034
Alw26I GTCTC 4 cut(s) 407, 431, 639, 736
AlwNI CAGNNNCTG 2 cut(s) 464, 567
AoxI GGCC 2 cut(s) 87, 466
ApeKI GCWGC 3 cut(s) 14, 605, 776
ApoI RAATTY 1 cut(s) 329
AseI ATTAAT 1 cut(s) 24
AspLEI GCGC 2 cut(s) 627, 757
AspS9I GGNCC 1 cut(s) 389
AsuC2I CCSGG 1 cut(s) 838
AsuHPI GGTGA 1 cut(s) 703
AvaII GGWCC 1 cut(s) 389
BaeI ACNNNNGTAYC 2 cut(s) 582, 615
BalI TGGCCA 1 cut(s) 89
BanI GGYRCC 1 cut(s) 754
BauI CACGAG 2 cut(s) 495, 534
BbrPI CACGTG 1 cut(s) 454
Bbv12I GWGCWC 1 cut(s) 1034
BbvI GCAGC 3 cut(s) 26, 617, 763
BccI CCATC 3 cut(s) 821, 861, 912
BclI TGATCA 1 cut(s) 198
BcnI CCSGG 1 cut(s) 838
BcoDI GTCTC 4 cut(s) 407, 431, 639, 736
BfaI CTAG 3 cut(s) 165, 864, 1016
BfmI CTRYAG 1 cut(s) 431
BfoI RGCGCY 1 cut(s) 758
BfuAI ACCTGC 1 cut(s) 1128
BisI GCNGC 4 cut(s) 15, 508, 606, 777
BlpI GCTNAGC 1 cut(s) 856
BlsI GCNGC 4 cut(s) 16, 509, 607, 778
Bme1390I CCNGG 1 cut(s) 838
Bme18I GGWCC 1 cut(s) 389
BmgT120I GGNCC 1 cut(s) 389
BmiI GGNNCC 1 cut(s) 756
BmrFI CCNGG 1 cut(s) 838
BmsI GCATC 6 cut(s) 14, 289, 311, 592, 871, 1119
BpmI CTGGAG 2 cut(s) 1001, 1091
Bpu1102I GCTNAGC 1 cut(s) 856
BpuEI CTTGAG 2 cut(s) 642, 947
BpuMI CCSGG 1 cut(s) 838
Bsa29I ATCGAT 1 cut(s) 798
BsaAI YACGTR 1 cut(s) 454
BsaHI GRCGYC 1 cut(s) 755
BsaJI CCNNGG 2 cut(s) 44, 408
BsaXI ACNNNNNCTCC 6 cut(s) 329, 359, 564, 594, 1089, 1119
Bsc4I CCNNNNNNNGG 1 cut(s) 433
Bse1I ACTGG 2 cut(s) 984, 1108
BseCI ATCGAT 1 cut(s) 798
BseDI CCNNGG 2 cut(s) 44, 408
BseGI GGATG 4 cut(s) 607, 886, 923, 1134
BseLI CCNNNNNNNGG 1 cut(s) 433
BseMII CTCAG 1 cut(s) 780
BseNI ACTGG 2 cut(s) 984, 1108
BseXI GCAGC 3 cut(s) 26, 617, 763
BseYI CCCAGC 1 cut(s) 567
BshFI GGCC 2 cut(s) 89, 468
BshNI GGYRCC 1 cut(s) 754
BshVI ATCGAT 1 cut(s) 798
BsiHKAI GWGCWC 1 cut(s) 1034
BsiSI CCGG 3 cut(s) 474, 511, 837
BslI CCNNNNNNNGG 1 cut(s) 433
BsmAI GTCTC 4 cut(s) 407, 431, 639, 736
BsmI GAATGC 1 cut(s) 627
BsnI GGCC 2 cut(s) 89, 468
Bsp1286I GDGCHC 1 cut(s) 1034
Bsp143I GATC 3 cut(s) 198, 848, 1086
Bsp1720I GCTNAGC 1 cut(s) 856
Bsp19I CCATGG 1 cut(s) 408
BspACI CCGC 2 cut(s) 62, 508
BspANI GGCC 2 cut(s) 89, 468
BspCNI CTCAG 1 cut(s) 781
BspDI ATCGAT 1 cut(s) 798
BspHI TCATGA 1 cut(s) 1051
BspLI GGNNCC 1 cut(s) 756
BspMI ACCTGC 1 cut(s) 1128
BspT107I GGYRCC 1 cut(s) 754
BsrI ACTGG 2 cut(s) 984, 1108
BssECI CCNNGG 2 cut(s) 44, 408
BssMI GATC 3 cut(s) 198, 848, 1086
BssNI GRCGYC 1 cut(s) 755
BssSI CACGAG 2 cut(s) 495, 534
BssT1I CCWWGG 2 cut(s) 44, 408
Bst2BI CACGAG 2 cut(s) 495, 534
Bst4CI ACNGT 2 cut(s) 77, 563
Bst6I CTCTTC 3 cut(s) 228, 312, 985
BstACI GRCGYC 1 cut(s) 755
BstBAI YACGTR 1 cut(s) 454
BstC8I GCNNGC 4 cut(s) 610, 935, 1134, 1158
BstDEI CTNAG 2 cut(s) 789, 856
BstDSI CCRYGG 1 cut(s) 408
BstENI CCTNNNNNAGG 1 cut(s) 431
BstF5I GGATG 4 cut(s) 607, 886, 923, 1134
BstH2I RGCGCY 1 cut(s) 758
BstHHI GCGC 2 cut(s) 627, 757
BstKTI GATC 3 cut(s) 201, 851, 1089
BstMAI GTCTC 4 cut(s) 407, 431, 639, 736
BstMBI GATC 3 cut(s) 198, 848, 1086
BstMWI GCNNNNNNNGC 6 cut(s) 11, 782, 1046, 1071, 1129, 1142
BstNSI RCATGY 1 cut(s) 896
BstSCI CCNGG 1 cut(s) 836
BstSFI CTRYAG 1 cut(s) 431
BstV1I GCAGC 3 cut(s) 26, 617, 763
BstXI CCANNNNNNTGG 1 cut(s) 97
Bsu15I ATCGAT 1 cut(s) 798
BsuRI GGCC 2 cut(s) 89, 468
BsuTUI ATCGAT 1 cut(s) 798
BtgI CCRYGG 1 cut(s) 408
BtgZI GCGATG 1 cut(s) 128
BtsCI GGATG 4 cut(s) 607, 886, 923, 1134
BtsI GCAGTG 1 cut(s) 1060
BtsIMutI CAGTG 5 cut(s) 416, 786, 938, 977, 1060
BveI ACCTGC 1 cut(s) 1128
Cac8I GCNNGC 4 cut(s) 610, 935, 1134, 1158
CaiI CAGNNNCTG 2 cut(s) 464, 567
CciI TCATGA 1 cut(s) 1051
CfoI GCGC 2 cut(s) 627, 757
Cfr13I GGNCC 1 cut(s) 389
ClaI ATCGAT 1 cut(s) 798
CseI GACGC 1 cut(s) 40
Csp6I GTAC 1 cut(s) 1111
CviQI GTAC 1 cut(s) 1111
DdeI CTNAG 2 cut(s) 789, 856
DinI GGCGCC 1 cut(s) 756
DpnI GATC 3 cut(s) 200, 850, 1088
DpnII GATC 3 cut(s) 198, 848, 1086
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 3 cut(s) 228, 312, 985
EarI CTCTTC 3 cut(s) 228, 312, 985
EciI GGCGGA 1 cut(s) 77
Eco130I CCWWGG 2 cut(s) 44, 408
Eco47I GGWCC 1 cut(s) 389
Eco72I CACGTG 1 cut(s) 454
EcoNI CCTNNNNNAGG 1 cut(s) 431
EcoT14I CCWWGG 2 cut(s) 44, 408
EcoT22I ATGCAT 1 cut(s) 304
EgeI GGCGCC 1 cut(s) 756
EheI GGCGCC 1 cut(s) 756
ErhI CCWWGG 2 cut(s) 44, 408
FbaI TGATCA 1 cut(s) 198
Fnu4HI GCNGC 4 cut(s) 15, 508, 606, 777
FokI GGATG 4 cut(s) 614, 893, 930, 1141
Fsp4HI GCNGC 4 cut(s) 15, 508, 606, 777
FspBI CTAG 3 cut(s) 165, 864, 1016
FspI TGCGCA 1 cut(s) 626
GlaI GCGC 2 cut(s) 626, 756
GluI GCNGC 4 cut(s) 15, 508, 606, 777
GsaI CCCAGC 1 cut(s) 571
GsuI CTGGAG 2 cut(s) 1001, 1091
HaeII RGCGCY 1 cut(s) 758
HaeIII GGCC 2 cut(s) 89, 468
HapII CCGG 3 cut(s) 474, 511, 837
HgaI GACGC 1 cut(s) 40
HhaI GCGC 2 cut(s) 627, 757
Hin1I GRCGYC 1 cut(s) 755
Hin6I GCGC 2 cut(s) 625, 755
HinP1I GCGC 2 cut(s) 625, 755
HindIII AAGCTT 1 cut(s) 818
HinfI GANTC 7 cut(s) 223, 448, 537, 727, 843, 922, 1019
HpaII CCGG 3 cut(s) 474, 511, 837
HphI GGTGA 1 cut(s) 703
Hpy166II GTNNAC 5 cut(s) 193, 320, 541, 898, 1113
Hpy188I TCNGA 6 cut(s) 180, 447, 644, 848, 989, 1128
Hpy188III TCNNGA 6 cut(s) 392, 497, 659, 731, 926, 1052
Hpy8I GTNNAC 5 cut(s) 193, 320, 541, 898, 1113
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 5 cut(s) 50, 120, 205, 437, 708
HpyCH4III ACNGT 2 cut(s) 77, 563
HpyCH4IV ACGT 1 cut(s) 453
HpyCH4V TGCA 5 cut(s) 302, 605, 779, 1065, 1132
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 782, 1046, 1071, 1129, 1142
HpyF3I CTNAG 2 cut(s) 789, 856
HpySE526I ACGT 1 cut(s) 453
Hsp92I GRCGYC 1 cut(s) 755
HspAI GCGC 2 cut(s) 625, 755
KasI GGCGCC 1 cut(s) 754
Ksp22I TGATCA 1 cut(s) 198
Kzo9I GATC 3 cut(s) 198, 848, 1086
Lsp1109I GCAGC 3 cut(s) 26, 617, 763
LweI GCATC 6 cut(s) 14, 289, 311, 592, 871, 1119
MaeI CTAG 3 cut(s) 165, 864, 1016
MaeII ACGT 1 cut(s) 453
MaeIII GTNAC 3 cut(s) 454, 529, 872
MalI GATC 3 cut(s) 200, 850, 1088
MboI GATC 3 cut(s) 198, 848, 1086
MboII GAAGA 5 cut(s) 79, 245, 299, 965, 1002
MfeI CAATTG 1 cut(s) 780
MhlI GDGCHC 1 cut(s) 1034
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 8 cut(s) 21, 275, 329, 585, 663, 780, 810, 1009
MluNI TGGCCA 1 cut(s) 89
Mly113I GGCGCC 1 cut(s) 755
MlyI GAGTC 1 cut(s) 546
MnlI CCTC 6 cut(s) 108, 229, 284, 331, 742, 1115
Mox20I TGGCCA 1 cut(s) 89
Mph1103I ATGCAT 1 cut(s) 304
MscI TGGCCA 1 cut(s) 89
MseI TTAA 4 cut(s) 24, 174, 216, 282
MslI CAYNNNNRTG 3 cut(s) 95, 689, 865
Msp20I TGGCCA 1 cut(s) 89
MspI CCGG 3 cut(s) 474, 511, 837
MspR9I CCNGG 1 cut(s) 838
MunI CAATTG 1 cut(s) 780
Mva1269I GAATGC 1 cut(s) 627
MwoI GCNNNNNNNGC 6 cut(s) 11, 782, 1046, 1071, 1129, 1142
NarI GGCGCC 1 cut(s) 755
NciI CCSGG 1 cut(s) 838
NcoI CCATGG 1 cut(s) 408
NdeII GATC 3 cut(s) 198, 848, 1086
NlaIV GGNNCC 1 cut(s) 756
NmuCI GTSAC 3 cut(s) 454, 529, 872
NsbI TGCGCA 1 cut(s) 626
NsiI ATGCAT 1 cut(s) 304
NspI RCATGY 1 cut(s) 896
OliI CACNNNNGTG 1 cut(s) 689
PagI TCATGA 1 cut(s) 1051
PaqCI CACCTGC 1 cut(s) 1128
PctI GAATGC 1 cut(s) 627
PfeI GAWTC 6 cut(s) 223, 448, 727, 843, 922, 1019
PkrI GCNGC 4 cut(s) 16, 509, 607, 778
PleI GAGTC 1 cut(s) 545
PluTI GGCGCC 1 cut(s) 758
PmaCI CACGTG 1 cut(s) 454
PmlI CACGTG 1 cut(s) 454
PpsI GAGTC 1 cut(s) 545
Ppu21I YACGTR 1 cut(s) 454
PshBI ATTAAT 1 cut(s) 24
PsiI TTATAA 1 cut(s) 371
PspCI CACGTG 1 cut(s) 454
PspFI CCCAGC 1 cut(s) 567
PspN4I GGNNCC 1 cut(s) 756
PspPI GGNCC 1 cut(s) 389
PstNI CAGNNNCTG 2 cut(s) 464, 567
RsaI GTAC 1 cut(s) 1112
RsaNI GTAC 1 cut(s) 1111
RseI CAYNNNNRTG 3 cut(s) 95, 689, 865
SaqAI TTAA 4 cut(s) 24, 174, 216, 282
SatI GCNGC 4 cut(s) 15, 508, 606, 777
Sau3AI GATC 3 cut(s) 198, 848, 1086
Sau96I GGNCC 1 cut(s) 389
SchI GAGTC 1 cut(s) 546
ScrFI CCNGG 1 cut(s) 838
SduI GDGCHC 1 cut(s) 1034
SfaNI GCATC 6 cut(s) 14, 289, 311, 592, 871, 1119
SfcI CTRYAG 1 cut(s) 431
SfoI GGCGCC 1 cut(s) 756
SinI GGWCC 1 cut(s) 389
SmiMI CAYNNNNRTG 3 cut(s) 95, 689, 865
SmlI CTYRAG 2 cut(s) 657, 926
SmoI CTYRAG 2 cut(s) 657, 926
Sse9I AATT 8 cut(s) 21, 275, 329, 585, 663, 780, 810, 1009
SsiI CCGC 2 cut(s) 62, 508
SspDI GGCGCC 1 cut(s) 754
SspMI CTAG 3 cut(s) 165, 864, 1016
StyD4I CCNGG 1 cut(s) 836
StyI CCWWGG 2 cut(s) 44, 408
TaaI ACNGT 2 cut(s) 77, 563
TaiI ACGT 1 cut(s) 456
TaqI TCGA 3 cut(s) 113, 798, 1085
TasI AATT 8 cut(s) 21, 275, 329, 585, 663, 780, 810, 1009
TatI WGTACW 1 cut(s) 1110
TauI GCSGC 1 cut(s) 510
TfiI GAWTC 6 cut(s) 223, 448, 727, 843, 922, 1019
Tru1I TTAA 4 cut(s) 24, 174, 216, 282
Tru9I TTAA 4 cut(s) 24, 174, 216, 282
TscAI CASTG 5 cut(s) 423, 793, 945, 984, 1067
TseFI GTSAC 3 cut(s) 454, 529, 872
TseI GCWGC 3 cut(s) 14, 605, 776
Tsp45I GTSAC 3 cut(s) 454, 529, 872
TspDTI ATGAA 7 cut(s) 215, 234, 299, 303, 437, 713, 1068
TspGWI ACGGA 2 cut(s) 145, 633
TspRI CASTG 5 cut(s) 423, 793, 945, 984, 1067
VpaK11BI GGWCC 1 cut(s) 389
VspI ATTAAT 1 cut(s) 24
XagI CCTNNNNNAGG 1 cut(s) 431
XapI RAATTY 1 cut(s) 329
XceI RCATGY 1 cut(s) 896
XspI CTAG 3 cut(s) 165, 864, 1016
Zsp2I ATGCAT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.