Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0013671

Physical Location & Seq

Genomic Coordinates Forward (+)

8171389 .. 8174212

Gene Structure 2824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG104600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGCATCAATGGCAGCAAGAATTAATGCGACGCTATACCTTCCAAGGCACATTTTCAAGGCGGAGAAGAATGACAGCATTGATGTGGCCACCCAAAAGGGATTTTATCCTTCGAGGGATAGGGCAACGAACACAAGACAACACCGCAGATTTTCGGTCATGGCTAGTAGTTCTGTTAATCCGAGAAGTCATGTGGACATGATCAATGGAAAGAAGGTTAATGGGATTCATGTGGAAGAGGCTGGTTCATTGTTAGGAAACATGAGTAGTGGTATTGAATTAGTTAAAGATAGAGGTAGTGATGCATCTCTTCATTCATGTTTACATGGGAAATTCGTGGAGGATAGGTTTGTATATAGGCAGACATTCGTTATAAGGTCTTATGAGATTGGTCCTGACAAAACTGCCACCATGGAGACACTGATGAACCTTCTACAGGAGACAGCTCTGAATCACGTGACAGGTTCTGGCCTTGCCGGAAATGGTTTCGGGGCTACTCGTGAGATGAGCCTCCGGAAACTTATTTGGGTCGTCACACGAGTCCACATTCAAGTTGAGAGATACAGTCGCTGGGGAGATGTTGTGGAAATTGATACTTGGGTGGATGCAGCAGGCAAAAACGGAATGCGCAGGGATTGGATTATCCGAGACTATCATACTCAAGAAATTATTAGCAGAGCAACAAGCACTTGGGTGATAATGAATAGAGAAACAAGAAGGTTGTCCAAGATTCCTGAACAAGTGAGACAAGAGGTGGCGCCTTTCTACCTAAACAGAGCTGCAATTGCCACTGAGAAAATCGATAGTGAGAAAATTGACAAGCTTACTGATGGAACTGCCGGGAGAATCCGATCAGGCTTAGCACCTAGATGGAGTGACATGGATGCCAACCAGCATGTAAACAATGTGAAATACATTGGATGGATTCTTGAGAGCGTGCCACTCAAAGTGTTAAAAGAATATGACATGACAAGCATGACACTGGAGTTCCGAAGAGAATGTAGGCAATCCAATTTGCTAGAATCATTGACGAGCACAACAGCAAGTTTGGCTCATGAACATCACTGCAACAACAGCAACAACAACTCGATCAATCGCAGACCAGACCTCCAGTACACACACCTGCTTCGGATGCAAGCCGATAAAGCAGAGATAGTGCGAGCAAGAACAGAATGGCATGGCAAACAAAAACATAAATCGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko01100 ko01212 map00061 map01100 map01212

Pfam Domains

Protein Families

Acyl-ACP_TE

Protein Analysis

401

Amino Acids

45.81

Weight (kDa)

9.58

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyl-ACP_TE	PF01643	118 - 251	7.2e-37	Acyl-ACP thioesterase N-terminal domain
Acyl-ACP_TE_C	PF20791	284 - 393	4.3e-23	Acyl-ACP thioesterase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013671)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08660
malus_domestica	MD06G1138100.v1.1 MD14G1153700.v1.1
prunus_persica	Prupe.5G148400_v2.0.a1
pyrus_communis	pycom06g12930 pycom06g12940 pycom14g12780 pycom14g12790
rosa_chinensis	RchiOBHm_Chr7g0189721
rosa_laevigata	RLG00000004595
rosa_multiflora	Rmu_sc0001924.1_g000022
rosa_roxburghii	Rroxscaffold_3G00265230
rosa_rugosa	Rorug06G0499300
rosa_samantha	Rh7AG104600 Rh7BG107000 Rh7CG109100 Rh7DG107600
rosa_wichuraiana	Rw7G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	374
AarI	CACCTGC	1 cut(s)	1131
Acc16I	TGCGCA	1 cut(s)	629
Acc36I	ACCTGC	1 cut(s)	1131
AccB1I	GGYRCC	1 cut(s)	757
AccIII	TCCGGA	1 cut(s)	513
AciI	CCGC	2 cut(s)	62, 145
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	332
AcvI	CACGTG	1 cut(s)	457
AcyI	GRCGYC	1 cut(s)	758
AfaI	GTAC	1 cut(s)	1115
AfiI	CCNNNNNNNGG	1 cut(s)	436
AgsI	TTSAA	3 cut(s)	58, 278, 551
AleI	CACNNNNGTG	1 cut(s)	692
AluBI	AGCT	3 cut(s)	446, 779, 823
AluI	AGCT	3 cut(s)	446, 779, 823
Alw21I	GWGCWC	1 cut(s)	1037
Alw26I	GTCTC	4 cut(s)	410, 434, 642, 739
AlwNI	CAGNNNCTG	2 cut(s)	467, 570
Aor13HI	TCCGGA	1 cut(s)	513
AoxI	GGCC	2 cut(s)	87, 469
ApeKI	GCWGC	3 cut(s)	14, 608, 779
ApoI	RAATTY	1 cut(s)	332
AseI	ATTAAT	1 cut(s)	24
AspLEI	GCGC	2 cut(s)	630, 760
AspS9I	GGNCC	1 cut(s)	392
AsuC2I	CCSGG	1 cut(s)	841
AsuHPI	GGTGA	1 cut(s)	706
AvaII	GGWCC	1 cut(s)	392
BaeI	ACNNNNGTAYC	2 cut(s)	585, 618
BalI	TGGCCA	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	757
BauI	CACGAG	2 cut(s)	498, 537
BbrPI	CACGTG	1 cut(s)	457
Bbv12I	GWGCWC	1 cut(s)	1037
BbvI	GCAGC	3 cut(s)	26, 620, 766
BccI	CCATC	3 cut(s)	824, 864, 915
BclI	TGATCA	1 cut(s)	201
BcnI	CCSGG	1 cut(s)	841
BcoDI	GTCTC	4 cut(s)	410, 434, 642, 739
BfaI	CTAG	3 cut(s)	165, 867, 1019
BfmI	CTRYAG	1 cut(s)	434
BfoI	RGCGCY	1 cut(s)	761
BfuAI	ACCTGC	1 cut(s)	1131
BisI	GCNGC	3 cut(s)	15, 609, 780
BlpI	GCTNAGC	1 cut(s)	859
BlsI	GCNGC	3 cut(s)	16, 610, 781
Bme1390I	CCNGG	1 cut(s)	841
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	1 cut(s)	759
BmrFI	CCNGG	1 cut(s)	841
BmsI	GCATC	6 cut(s)	14, 292, 314, 595, 874, 1122
BpmI	CTGGAG	2 cut(s)	1004, 1094
Bpu1102I	GCTNAGC	1 cut(s)	859
BpuEI	CTTGAG	2 cut(s)	645, 950
BpuMI	CCSGG	1 cut(s)	841
Bsa29I	ATCGAT	1 cut(s)	801
BsaAI	YACGTR	1 cut(s)	457
BsaHI	GRCGYC	1 cut(s)	758
BsaJI	CCNNGG	2 cut(s)	44, 411
BsaWI	WCCGGW	1 cut(s)	513
BsaXI	ACNNNNNCTCC	6 cut(s)	332, 362, 567, 597, 1092, 1122
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse1I	ACTGG	2 cut(s)	987, 1111
BseAI	TCCGGA	1 cut(s)	513
BseCI	ATCGAT	1 cut(s)	801
BseDI	CCNNGG	2 cut(s)	44, 411
BseGI	GGATG	4 cut(s)	610, 889, 926, 1137
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMII	CTCAG	1 cut(s)	783
BseNI	ACTGG	2 cut(s)	987, 1111
BseXI	GCAGC	3 cut(s)	26, 620, 766
BseYI	CCCAGC	1 cut(s)	570
BshFI	GGCC	2 cut(s)	89, 471
BshNI	GGYRCC	1 cut(s)	757
BshVI	ATCGAT	1 cut(s)	801
BsiHKAI	GWGCWC	1 cut(s)	1037
BsiSI	CCGG	3 cut(s)	477, 514, 840
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmAI	GTCTC	4 cut(s)	410, 434, 642, 739
BsmI	GAATGC	1 cut(s)	630
BsnI	GGCC	2 cut(s)	89, 471
Bsp1286I	GDGCHC	1 cut(s)	1037
Bsp13I	TCCGGA	1 cut(s)	513
Bsp143I	GATC	3 cut(s)	201, 851, 1089
Bsp1720I	GCTNAGC	1 cut(s)	859
Bsp19I	CCATGG	1 cut(s)	411
BspACI	CCGC	2 cut(s)	62, 145
BspANI	GGCC	2 cut(s)	89, 471
BspCNI	CTCAG	1 cut(s)	784
BspDI	ATCGAT	1 cut(s)	801
BspEI	TCCGGA	1 cut(s)	513
BspHI	TCATGA	1 cut(s)	1054
BspLI	GGNNCC	1 cut(s)	759
BspMI	ACCTGC	1 cut(s)	1131
BspT107I	GGYRCC	1 cut(s)	757
BsrI	ACTGG	2 cut(s)	987, 1111
BssECI	CCNNGG	2 cut(s)	44, 411
BssMI	GATC	3 cut(s)	201, 851, 1089
BssNI	GRCGYC	1 cut(s)	758
BssSI	CACGAG	2 cut(s)	498, 537
BssT1I	CCWWGG	2 cut(s)	44, 411
Bst2BI	CACGAG	2 cut(s)	498, 537
Bst4CI	ACNGT	1 cut(s)	566
Bst6I	CTCTTC	3 cut(s)	231, 315, 988
BstACI	GRCGYC	1 cut(s)	758
BstBAI	YACGTR	1 cut(s)	457
BstC8I	GCNNGC	4 cut(s)	613, 938, 1137, 1161
BstDEI	CTNAG	2 cut(s)	792, 859
BstDSI	CCRYGG	1 cut(s)	411
BstENI	CCTNNNNNAGG	1 cut(s)	434
BstF5I	GGATG	4 cut(s)	610, 889, 926, 1137
BstH2I	RGCGCY	1 cut(s)	761
BstHHI	GCGC	2 cut(s)	630, 760
BstKTI	GATC	3 cut(s)	204, 854, 1092
BstMAI	GTCTC	4 cut(s)	410, 434, 642, 739
BstMBI	GATC	3 cut(s)	201, 851, 1089
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 785, 1049, 1074, 1132, 1145
BstNSI	RCATGY	1 cut(s)	899
BstSCI	CCNGG	1 cut(s)	839
BstSFI	CTRYAG	1 cut(s)	434
BstV1I	GCAGC	3 cut(s)	26, 620, 766
Bsu15I	ATCGAT	1 cut(s)	801
BsuRI	GGCC	2 cut(s)	89, 471
BsuTUI	ATCGAT	1 cut(s)	801
BtgI	CCRYGG	1 cut(s)	411
BtsCI	GGATG	4 cut(s)	610, 889, 926, 1137
BtsI	GCAGTG	1 cut(s)	1063
BtsIMutI	CAGTG	4 cut(s)	419, 789, 980, 1063
BveI	ACCTGC	1 cut(s)	1131
Cac8I	GCNNGC	4 cut(s)	613, 938, 1137, 1161
CaiI	CAGNNNCTG	2 cut(s)	467, 570
CciI	TCATGA	1 cut(s)	1054
CfoI	GCGC	2 cut(s)	630, 760
Cfr13I	GGNCC	1 cut(s)	392
ClaI	ATCGAT	1 cut(s)	801
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	1114
CviQI	GTAC	1 cut(s)	1114
DdeI	CTNAG	2 cut(s)	792, 859
DinI	GGCGCC	1 cut(s)	759
DpnI	GATC	3 cut(s)	203, 853, 1091
DpnII	GATC	3 cut(s)	201, 851, 1089
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	3 cut(s)	231, 315, 988
EarI	CTCTTC	3 cut(s)	231, 315, 988
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	2 cut(s)	44, 411
Eco47I	GGWCC	1 cut(s)	392
Eco72I	CACGTG	1 cut(s)	457
EcoNI	CCTNNNNNAGG	1 cut(s)	434
EcoT14I	CCWWGG	2 cut(s)	44, 411
EcoT22I	ATGCAT	1 cut(s)	307
EgeI	GGCGCC	1 cut(s)	759
EheI	GGCGCC	1 cut(s)	759
ErhI	CCWWGG	2 cut(s)	44, 411
FbaI	TGATCA	1 cut(s)	201
Fnu4HI	GCNGC	3 cut(s)	15, 609, 780
FokI	GGATG	4 cut(s)	617, 896, 933, 1144
Fsp4HI	GCNGC	3 cut(s)	15, 609, 780
FspBI	CTAG	3 cut(s)	165, 867, 1019
FspI	TGCGCA	1 cut(s)	629
GlaI	GCGC	2 cut(s)	629, 759
GluI	GCNGC	3 cut(s)	15, 609, 780
GsaI	CCCAGC	1 cut(s)	574
GsuI	CTGGAG	2 cut(s)	1004, 1094
HaeII	RGCGCY	1 cut(s)	761
HaeIII	GGCC	2 cut(s)	89, 471
HapII	CCGG	3 cut(s)	477, 514, 840
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	2 cut(s)	630, 760
Hin1I	GRCGYC	1 cut(s)	758
Hin6I	GCGC	2 cut(s)	628, 758
HinP1I	GCGC	2 cut(s)	628, 758
HindIII	AAGCTT	1 cut(s)	821
HinfI	GANTC	7 cut(s)	226, 451, 540, 730, 846, 925, 1022
HpaII	CCGG	3 cut(s)	477, 514, 840
HphI	GGTGA	1 cut(s)	706
Hpy166II	GTNNAC	5 cut(s)	196, 323, 544, 901, 1116
Hpy188I	TCNGA	6 cut(s)	183, 450, 647, 851, 992, 1131
Hpy188III	TCNNGA	7 cut(s)	395, 500, 514, 662, 734, 929, 1055
Hpy8I	GTNNAC	5 cut(s)	196, 323, 544, 901, 1116
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	5 cut(s)	50, 120, 208, 440, 711
HpyCH4III	ACNGT	1 cut(s)	566
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	5 cut(s)	305, 608, 782, 1068, 1135
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 785, 1049, 1074, 1132, 1145
HpyF3I	CTNAG	2 cut(s)	792, 859
HpySE526I	ACGT	1 cut(s)	456
Hsp92I	GRCGYC	1 cut(s)	758
HspAI	GCGC	2 cut(s)	628, 758
KasI	GGCGCC	1 cut(s)	757
Kpn2I	TCCGGA	1 cut(s)	513
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	3 cut(s)	201, 851, 1089
Lsp1109I	GCAGC	3 cut(s)	26, 620, 766
LweI	GCATC	6 cut(s)	14, 292, 314, 595, 874, 1122
MaeI	CTAG	3 cut(s)	165, 867, 1019
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	3 cut(s)	457, 532, 875
MalI	GATC	3 cut(s)	203, 853, 1091
MboI	GATC	3 cut(s)	201, 851, 1089
MboII	GAAGA	4 cut(s)	79, 248, 302, 1005
MfeI	CAATTG	1 cut(s)	783
MhlI	GDGCHC	1 cut(s)	1037
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	9 cut(s)	21, 278, 332, 588, 666, 783, 813, 1012, 1201
MluNI	TGGCCA	1 cut(s)	89
Mly113I	GGCGCC	1 cut(s)	758
MlyI	GAGTC	1 cut(s)	549
MnlI	CCTC	7 cut(s)	108, 232, 287, 334, 521, 745, 1118
Mox20I	TGGCCA	1 cut(s)	89
Mph1103I	ATGCAT	1 cut(s)	307
MroI	TCCGGA	1 cut(s)	513
MscI	TGGCCA	1 cut(s)	89
MseI	TTAA	5 cut(s)	24, 177, 219, 285, 953
MslI	CAYNNNNRTG	3 cut(s)	83, 692, 868
Msp20I	TGGCCA	1 cut(s)	89
MspI	CCGG	3 cut(s)	477, 514, 840
MspR9I	CCNGG	1 cut(s)	841
MunI	CAATTG	1 cut(s)	783
Mva1269I	GAATGC	1 cut(s)	630
MwoI	GCNNNNNNNGC	6 cut(s)	11, 785, 1049, 1074, 1132, 1145
NarI	GGCGCC	1 cut(s)	758
NciI	CCSGG	1 cut(s)	841
NcoI	CCATGG	1 cut(s)	411
NdeII	GATC	3 cut(s)	201, 851, 1089
NlaIV	GGNNCC	1 cut(s)	759
NmuCI	GTSAC	3 cut(s)	457, 532, 875
NsbI	TGCGCA	1 cut(s)	629
NsiI	ATGCAT	1 cut(s)	307
NspI	RCATGY	1 cut(s)	899
OliI	CACNNNNGTG	1 cut(s)	692
PagI	TCATGA	1 cut(s)	1054
PaqCI	CACCTGC	1 cut(s)	1131
PctI	GAATGC	1 cut(s)	630
PfeI	GAWTC	6 cut(s)	226, 451, 730, 846, 925, 1022
PkrI	GCNGC	3 cut(s)	16, 610, 781
PleI	GAGTC	1 cut(s)	548
PluTI	GGCGCC	1 cut(s)	761
PmaCI	CACGTG	1 cut(s)	457
PmlI	CACGTG	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	548
Ppu21I	YACGTR	1 cut(s)	457
PshBI	ATTAAT	1 cut(s)	24
PsiI	TTATAA	1 cut(s)	374
PspCI	CACGTG	1 cut(s)	457
PspFI	CCCAGC	1 cut(s)	570
PspN4I	GGNNCC	1 cut(s)	759
PspPI	GGNCC	1 cut(s)	392
PstNI	CAGNNNCTG	2 cut(s)	467, 570
RsaI	GTAC	1 cut(s)	1115
RsaNI	GTAC	1 cut(s)	1114
RseI	CAYNNNNRTG	3 cut(s)	83, 692, 868
SaqAI	TTAA	5 cut(s)	24, 177, 219, 285, 953
SatI	GCNGC	3 cut(s)	15, 609, 780
Sau3AI	GATC	3 cut(s)	201, 851, 1089
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	1 cut(s)	549
ScrFI	CCNGG	1 cut(s)	841
SduI	GDGCHC	1 cut(s)	1037
SfaNI	GCATC	6 cut(s)	14, 292, 314, 595, 874, 1122
SfcI	CTRYAG	1 cut(s)	434
SfoI	GGCGCC	1 cut(s)	759
SinI	GGWCC	1 cut(s)	392
SmiMI	CAYNNNNRTG	3 cut(s)	83, 692, 868
SmlI	CTYRAG	2 cut(s)	660, 929
SmoI	CTYRAG	2 cut(s)	660, 929
Sse9I	AATT	9 cut(s)	21, 278, 332, 588, 666, 783, 813, 1012, 1201
SsiI	CCGC	2 cut(s)	62, 145
SspDI	GGCGCC	1 cut(s)	757
SspMI	CTAG	3 cut(s)	165, 867, 1019
StyD4I	CCNGG	1 cut(s)	839
StyI	CCWWGG	2 cut(s)	44, 411
TaaI	ACNGT	1 cut(s)	566
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	4 cut(s)	113, 801, 1088, 1199
TaqII	GACCGA	1 cut(s)	145
TasI	AATT	9 cut(s)	21, 278, 332, 588, 666, 783, 813, 1012, 1201
TatI	WGTACW	1 cut(s)	1113
TfiI	GAWTC	6 cut(s)	226, 451, 730, 846, 925, 1022
Tru1I	TTAA	5 cut(s)	24, 177, 219, 285, 953
Tru9I	TTAA	5 cut(s)	24, 177, 219, 285, 953
TscAI	CASTG	4 cut(s)	426, 796, 987, 1070
TseFI	GTSAC	3 cut(s)	457, 532, 875
TseI	GCWGC	3 cut(s)	14, 608, 779
Tsp45I	GTSAC	3 cut(s)	457, 532, 875
TspDTI	ATGAA	7 cut(s)	218, 237, 302, 306, 440, 716, 1071
TspGWI	ACGGA	1 cut(s)	636
TspRI	CASTG	4 cut(s)	426, 796, 987, 1070
VpaK11BI	GGWCC	1 cut(s)	392
VspI	ATTAAT	1 cut(s)	24
XagI	CCTNNNNNAGG	1 cut(s)	434
XapI	RAATTY	1 cut(s)	332
XceI	RCATGY	1 cut(s)	899
XspI	CTAG	3 cut(s)	165, 867, 1019
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.