pycom06g12930

Plays an essential role in chain termination during de novo fatty acid synthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0013671
Physical Location & Seq
Forward (+)
18004689 .. 18005857
1169 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g12930.3

Sequence Viewer

Length: 723 bp
ATGGCATCAATGGCAGCAAGAACTAATAATATCGCCACACTACGCCTCCCTGGGGACGTGTTCAAGGTGGGGAAGAAGAATGAGACGGGGACGAAATTAGGGTGTTATCCTTCAAGGCATGTAGCAATGATCACGAGAAAAAATGGAAACTTTGTGGTGAGGGCCGGTGCCGGTGGAACTCCTAGAAGCGTGGAGACAATCAATGGGAAGGTCAATGGTGTTCATGTGGGAGAGGCTAAATTATTTGGAAACAAGAATAGTATAGAGCTGATTAATGGTGACGGCGGTTCACCTCCTCATTCCTCTTTGCATGGAAAGTTTGTGGAGGAGAGGTTTGTTTATAGGCAGACCTTTGTTATTAGGTCTTATGAGATTGGACCTGACAAAACTGCCACCATGGAAACCCTAATGAATCTCCTTCAGGAGACAGCTCTAAATCATGTGACAAGTTCCGGCCTTGCCGGAAATGGATTTGGGGCTACCCGTGAGATGAGCATCCGGAAGCTCATTTGGGTCGTCACACGGATCCACATTCAAGTACATAGATATAGCTCCTGGGGAGATGTGGTCGAAATCGATACTTGGGTGGACGCAGCAGGCAAAAACGGAATGCGAAGAGATTGGATTATCCGAGACTACCAAACTCAAGAAATCATTACCAGAGCTACAAGCACCTGGGTGATCGATGAACAGAGAGACAAGAAGGCTGTCCAAGATACCTGA

Protein Analysis

241

Amino Acids

26.62

Weight (kDa)

9.67

Isoelectric Point (pI)

23.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013671)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g08660
malus_domestica MD06G1138100.v1.1 MD14G1153700.v1.1
prunus_persica Prupe.5G148400_v2.0.a1
pyrus_communis pycom06g12930 pycom06g12940 pycom14g12780 pycom14g12790
rosa_chinensis RchiOBHm_Chr7g0189721
rosa_laevigata RLG00000004595
rosa_multiflora Rmu_sc0001924.1_g000022
rosa_roxburghii Rroxscaffold_3G00265230
rosa_rugosa Rorug06G0499300
rosa_samantha Rh7AG104600 Rh7BG107000 Rh7CG109100 Rh7DG107600
rosa_wichuraiana Rw7G009050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AccIII TCCGGA 1 cut(s) 498
AciI CCGC 1 cut(s) 285
AclWI GGATC 2 cut(s) 520, 533
AcuI CTGAAG 1 cut(s) 404
AfaI GTAC 1 cut(s) 540
AfiI CCNNNNNNNGG 1 cut(s) 52
AflIII ACRYGT 1 cut(s) 57
AgsI TTSAA 3 cut(s) 64, 114, 536
AjiI CACGTC 1 cut(s) 58
AjnI CCWGG 3 cut(s) 49, 554, 674
AleI CACNNNNGTG 1 cut(s) 677
AluBI AGCT 5 cut(s) 268, 431, 505, 552, 665
AluI AGCT 5 cut(s) 268, 431, 505, 552, 665
Alw26I GTCTC 5 cut(s) 77, 188, 419, 627, 690
AlwI GGATC 2 cut(s) 520, 533
Aor13HI TCCGGA 1 cut(s) 498
AoxI GGCC 2 cut(s) 162, 454
ApeKI GCWGC 2 cut(s) 14, 593
AseI ATTAAT 1 cut(s) 273
AspS9I GGNCC 2 cut(s) 162, 377
AsuHPI GGTGA 4 cut(s) 169, 282, 290, 691
AvaII GGWCC 1 cut(s) 377
BaeI ACNNNNGTAYC 2 cut(s) 570, 603
BamHI GGATCC 1 cut(s) 525
BanI GGYRCC 1 cut(s) 167
BauI CACGAG 1 cut(s) 133
BbvI GCAGC 2 cut(s) 26, 605
BceAI ACGGC 1 cut(s) 298
BciT130I CCWGG 3 cut(s) 51, 556, 676
BclI TGATCA 1 cut(s) 129
BcoDI GTCTC 5 cut(s) 77, 188, 419, 627, 690
BfaI CTAG 1 cut(s) 183
BisI GCNGC 2 cut(s) 15, 594
BlsI GCNGC 2 cut(s) 16, 595
Bme1390I CCNGG 3 cut(s) 51, 556, 676
Bme18I GGWCC 1 cut(s) 377
BmgBI CACGTC 1 cut(s) 58
BmgT120I GGNCC 2 cut(s) 162, 377
BmiI GGNNCC 2 cut(s) 169, 527
BmrFI CCNGG 3 cut(s) 51, 556, 676
BmsI GCATC 2 cut(s) 14, 504
BpuEI CTTGAG 1 cut(s) 630
Bsa29I ATCGAT 2 cut(s) 576, 684
BsaBI GATNNNNATC 1 cut(s) 494
BsaJI CCNNGG 5 cut(s) 49, 50, 396, 555, 675
BsaWI WCCGGW 1 cut(s) 498
BsaXI ACNNNNNCTCC 6 cut(s) 30, 60, 317, 347, 552, 582
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse118I RCCGGY 2 cut(s) 164, 170
Bse3DI GCAATG 1 cut(s) 132
Bse8I GATNNNNATC 1 cut(s) 494
BseAI TCCGGA 1 cut(s) 498
BseBI CCWGG 3 cut(s) 51, 556, 676
BseCI ATCGAT 2 cut(s) 576, 684
BseDI CCNNGG 5 cut(s) 49, 50, 396, 555, 675
BseGI GGATG 1 cut(s) 495
BseJI GATNNNNATC 1 cut(s) 494
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMI GCAATG 1 cut(s) 132
BseRI GAGGAG 2 cut(s) 285, 341
BseXI GCAGC 2 cut(s) 26, 605
BshFI GGCC 2 cut(s) 164, 456
BshNI GGYRCC 1 cut(s) 167
BshVI ATCGAT 2 cut(s) 576, 684
BsiSI CCGG 5 cut(s) 165, 171, 453, 462, 499
BslFI GGGAC 2 cut(s) 68, 103
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 5 cut(s) 77, 188, 419, 627, 690
BsmBI CGTCTC 1 cut(s) 77
BsmFI GGGAC 2 cut(s) 68, 103
BsmI GAATGC 1 cut(s) 615
BsnI GGCC 2 cut(s) 164, 456
Bsp13I TCCGGA 1 cut(s) 498
Bsp143I GATC 3 cut(s) 129, 525, 681
Bsp19I CCATGG 1 cut(s) 396
BspACI CCGC 1 cut(s) 285
BspANI GGCC 2 cut(s) 164, 456
BspDI ATCGAT 2 cut(s) 576, 684
BspEI TCCGGA 1 cut(s) 498
BspLI GGNNCC 2 cut(s) 169, 527
BspPI GGATC 2 cut(s) 520, 533
BspT107I GGYRCC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 132
BsrFI RCCGGY 2 cut(s) 164, 170
BssAI RCCGGY 2 cut(s) 164, 170
BssECI CCNNGG 5 cut(s) 49, 50, 396, 555, 675
BssMI GATC 3 cut(s) 129, 525, 681
BssSI CACGAG 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 396
Bst2BI CACGAG 1 cut(s) 133
Bst2UI CCWGG 3 cut(s) 51, 556, 676
Bst6I CTCTTC 1 cut(s) 610
BstC8I GCNNGC 1 cut(s) 598
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 1 cut(s) 495
BstKTI GATC 3 cut(s) 132, 528, 684
BstMAI GTCTC 5 cut(s) 77, 188, 419, 627, 690
BstMBI GATC 3 cut(s) 129, 525, 681
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 3 cut(s) 51, 556, 676
BstNSI RCATGY 1 cut(s) 122
BstSCI CCNGG 3 cut(s) 49, 554, 674
BstV1I GCAGC 2 cut(s) 26, 605
BstX2I RGATCY 1 cut(s) 525
BstYI RGATCY 1 cut(s) 525
Bsu15I ATCGAT 2 cut(s) 576, 684
BsuRI GGCC 2 cut(s) 164, 456
BsuTUI ATCGAT 2 cut(s) 576, 684
BtgI CCRYGG 1 cut(s) 396
BtrI CACGTC 1 cut(s) 58
BtsCI GGATG 1 cut(s) 495
Cac8I GCNNGC 1 cut(s) 598
Cfr10I RCCGGY 2 cut(s) 164, 170
Cfr13I GGNCC 2 cut(s) 162, 377
ClaI ATCGAT 2 cut(s) 576, 684
CseI GACGC 1 cut(s) 599
Csp6I GTAC 1 cut(s) 539
CviAII CATG 5 cut(s) 119, 224, 311, 397, 440
CviQI GTAC 1 cut(s) 539
DpnI GATC 3 cut(s) 131, 527, 683
DpnII GATC 3 cut(s) 129, 525, 681
Eam1104I CTCTTC 1 cut(s) 610
EarI CTCTTC 1 cut(s) 610
Eco130I CCWWGG 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 377
Eco57I CTGAAG 1 cut(s) 404
EcoRII CCWGG 3 cut(s) 49, 554, 674
EcoT14I CCWWGG 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 396
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 5 cut(s) 122, 227, 314, 400, 443
FaqI GGGAC 2 cut(s) 68, 103
FatI CATG 5 cut(s) 118, 223, 310, 396, 439
FbaI TGATCA 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 15, 594
FokI GGATG 1 cut(s) 482
Fsp4HI GCNGC 2 cut(s) 15, 594
FspBI CTAG 1 cut(s) 183
GluI GCNGC 2 cut(s) 15, 594
HaeIII GGCC 2 cut(s) 164, 456
HapII CCGG 5 cut(s) 165, 171, 453, 462, 499
HgaI GACGC 1 cut(s) 599
Hin1II CATG 5 cut(s) 122, 227, 314, 400, 443
HinfI GANTC 1 cut(s) 412
HpaII CCGG 5 cut(s) 165, 171, 453, 462, 499
HphI GGTGA 4 cut(s) 169, 282, 290, 691
Hpy166II GTNNAC 2 cut(s) 290, 589
Hpy188I TCNGA 1 cut(s) 632
Hpy188III TCNNGA 4 cut(s) 133, 422, 499, 647
Hpy8I GTNNAC 2 cut(s) 290, 589
HpyAV CCTTC 4 cut(s) 120, 202, 428, 697
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 310
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 5 cut(s) 122, 227, 314, 400, 443
Kpn2I TCCGGA 1 cut(s) 498
Ksp22I TGATCA 1 cut(s) 129
Kzo9I GATC 3 cut(s) 129, 525, 681
LmnI GCTCC 1 cut(s) 557
Lsp1109I GCAGC 2 cut(s) 26, 605
LweI GCATC 2 cut(s) 14, 504
MaeI CTAG 1 cut(s) 183
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 3 cut(s) 278, 442, 517
MalI GATC 3 cut(s) 131, 527, 683
MboI GATC 3 cut(s) 129, 525, 681
MboII GAAGA 3 cut(s) 85, 88, 627
MflI RGATCY 1 cut(s) 525
MluCI AATT 2 cut(s) 95, 239
MnlI CCTC 8 cut(s) 56, 153, 226, 303, 306, 313, 319, 324
MroI TCCGGA 1 cut(s) 498
MseI TTAA 1 cut(s) 273
MslI CAYNNNNRTG 1 cut(s) 677
MspI CCGG 5 cut(s) 165, 171, 453, 462, 499
MspR9I CCNGG 3 cut(s) 51, 556, 676
Mva1269I GAATGC 1 cut(s) 615
MvaI CCWGG 3 cut(s) 51, 556, 676
MwoI GCNNNNNNNGC 1 cut(s) 11
NcoI CCATGG 1 cut(s) 396
NdeII GATC 3 cut(s) 129, 525, 681
NlaIII CATG 5 cut(s) 122, 227, 314, 400, 443
NlaIV GGNNCC 2 cut(s) 169, 527
NmuCI GTSAC 3 cut(s) 278, 442, 517
NspI RCATGY 1 cut(s) 122
OliI CACNNNNGTG 1 cut(s) 677
PasI CCCWGGG 1 cut(s) 50
PctI GAATGC 1 cut(s) 615
PfeI GAWTC 1 cut(s) 412
PkrI GCNGC 2 cut(s) 16, 595
PshBI ATTAAT 1 cut(s) 273
Psp6I CCWGG 3 cut(s) 49, 554, 674
PspGI CCWGG 3 cut(s) 49, 554, 674
PspN4I GGNNCC 2 cut(s) 169, 527
PspPI GGNCC 2 cut(s) 162, 377
PsuI RGATCY 1 cut(s) 525
RsaI GTAC 1 cut(s) 540
RsaNI GTAC 1 cut(s) 539
RseI CAYNNNNRTG 1 cut(s) 677
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 2 cut(s) 15, 594
Sau3AI GATC 3 cut(s) 129, 525, 681
Sau96I GGNCC 2 cut(s) 162, 377
ScrFI CCNGG 3 cut(s) 51, 556, 676
SfaNI GCATC 2 cut(s) 14, 504
SinI GGWCC 1 cut(s) 377
SmiMI CAYNNNNRTG 1 cut(s) 677
SmlI CTYRAG 1 cut(s) 645
SmoI CTYRAG 1 cut(s) 645
Sse9I AATT 2 cut(s) 95, 239
SsiI CCGC 1 cut(s) 285
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 3 cut(s) 49, 554, 674
StyI CCWWGG 1 cut(s) 396
TaiI ACGT 1 cut(s) 60
TaqI TCGA 3 cut(s) 570, 576, 684
TasI AATT 2 cut(s) 95, 239
TatI WGTACW 1 cut(s) 538
TfiI GAWTC 1 cut(s) 412
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TseFI GTSAC 3 cut(s) 278, 442, 517
TseI GCWGC 2 cut(s) 14, 593
Tsp45I GTSAC 3 cut(s) 278, 442, 517
TspDTI ATGAA 3 cut(s) 212, 425, 702
TspGWI ACGGA 2 cut(s) 538, 621
VpaK11BI GGWCC 1 cut(s) 377
VspI ATTAAT 1 cut(s) 273
XceI RCATGY 1 cut(s) 122
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.