Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0013671

Physical Location & Seq

Genomic Coordinates Forward (+)

24778965 .. 24780967

Gene Structure 2003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1153700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGCAACAAGAACTAATAGTATCGCCACGCTACGCCTTCCGGGGGACGTGTTGATAGCGGGGAAGAATGAGACAGCTACCAAATTAGGGTTTTATTCTTCGAGGCATGTAGCAATGATCACGAGAAAAAATGGAAACTTTTCGGTGAGGGCCGGTGCCGGCGGAACTCCTAGAAGTGTGGAGACAATCAATGGGAAGATCAATGGTGTTCATGTGGGAGAGGCTACATTATTTGGAAACAAGAATAGTAAAGAGTTGATTAATGGTGATGGCGATTCACCTCCGCATTCCTCTTTGCATGGAAAGTTTGTGGAGGAAAGGTTTATTTATAGGCAGACCCTTGTTATTAGGTCTTATGAGATTGGACCTGACAAAACTGCCACCATGGAAACCCTAATGAATCTCCTCCAGGAGACAGCTCTAAATCATGTGACAAGTTCCGGCCTTGCCGGGAATGGATTTGGGGCTACCCGTGAGATGAGCATCCGGAGGCTCATTTGGGTCGTCACACGGATCCACATTCAAGTACAGAGATACAACTCCTGGGGAGATGTGGTCGAAATCGATACTTGGGTGGATGCAGCGGGCAAAAACGGAATGCGAAGAGATTGGATTATCCGAGACTACCAGACTCAAGAAATTATTACCAGAGCTACAAGCACTTGGGTGATCATGAACCGAGAGACAAGAAGGCTGTCCAAGATACCTGATCAAGTGAGGCAAGAGGTGTTACCATTCTACCTAAACAGATTTGCAATTGCTAAAGATAAAAATGACAGCGAGAAAATCGACAAGCTCACCGATGATACTGCAGAGAGGATCACATCAGGTTTAGCACCAAGATGGAGTGACATGGATGCCAACCAACATGTTAACAATGTGAAATACATTGGATGGATTTTGGAGAGTGTGCCCATCAATGTATTGGGAGATTATGATCTCACAAGCATGACACTGGAGTATAGACGTGAATGTAGACAATCAAATTTGCTAGAGTCTCTAACAAGTACAACATCAAGTTTGGCTGATGACTCCAACTGCAAGAACAACTCCATCAATCGGAGACCAGACCTAGAATACACACACCTTCTCCGGATGCAGGCCGATAAGGCAGAGATAGTACGAGCACGAACGGAATGGAATACGAAACAAAAGGATAAACTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko01100 ko01212 map00061 map01100 map01212

Pfam Domains

Protein Families

Acyl-ACP_TE

Protein Analysis

390

Amino Acids

44.07

Weight (kDa)

9.16

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyl-ACP_TE	PF01643	110 - 242	4.1e-36	Acyl-ACP thioesterase N-terminal domain
Acyl-ACP_TE_C	PF20791	270 - 381	6.6e-24	Acyl-ACP thioesterase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013671)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08660
malus_domestica	MD06G1138100.v1.1 MD14G1153700.v1.1
prunus_persica	Prupe.5G148400_v2.0.a1
pyrus_communis	pycom06g12930 pycom06g12940 pycom14g12780 pycom14g12790
rosa_chinensis	RchiOBHm_Chr7g0189721
rosa_laevigata	RLG00000004595
rosa_multiflora	Rmu_sc0001924.1_g000022
rosa_roxburghii	Rroxscaffold_3G00265230
rosa_rugosa	Rorug06G0499300
rosa_samantha	Rh7AG104600 Rh7BG107000 Rh7CG109100 Rh7DG107600
rosa_wichuraiana	Rw7G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	976
AccIII	TCCGGA	2 cut(s)	486, 1092
AciI	CCGC	4 cut(s)	59, 162, 284, 584
AclWI	GGATC	3 cut(s)	508, 521, 827
AcsI	RAATTY	1 cut(s)	985
AfaI	GTAC	3 cut(s)	528, 1009, 1122
AfiI	CCNNNNNNNGG	4 cut(s)	43, 87, 1059, 1099
AflIII	ACRYGT	2 cut(s)	48, 868
AgsI	TTSAA	1 cut(s)	524
AjiI	CACGTC	2 cut(s)	49, 968
AjnI	CCWGG	2 cut(s)	408, 542
AleI	CACNNNNGTG	1 cut(s)	665
AluBI	AGCT	4 cut(s)	77, 419, 653, 796
AluI	AGCT	4 cut(s)	77, 419, 653, 796
Alw21I	GWGCWC	1 cut(s)	1129
Alw26I	GTCTC	7 cut(s)	65, 176, 407, 615, 677, 1002, 1057
AlwI	GGATC	3 cut(s)	508, 521, 827
Aor13HI	TCCGGA	2 cut(s)	486, 1092
AoxI	GGCC	3 cut(s)	150, 442, 1101
ApeKI	GCWGC	1 cut(s)	581
ApoI	RAATTY	1 cut(s)	985
AseI	ATTAAT	1 cut(s)	261
Asp700I	GAANNNNTTC	1 cut(s)	139
AspS9I	GGNCC	2 cut(s)	150, 365
AsuC2I	CCSGG	2 cut(s)	42, 451
AsuHPI	GGTGA	5 cut(s)	157, 270, 278, 679, 790
AvaII	GGWCC	1 cut(s)	365
BaeGI	GKGCMC	1 cut(s)	915
BaeI	ACNNNNGTAYC	2 cut(s)	558, 591
BamHI	GGATCC	1 cut(s)	513
BanI	GGYRCC	1 cut(s)	155
BauI	CACGAG	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	1129
BbvI	GCAGC	1 cut(s)	593
BccI	CCATC	5 cut(s)	263, 837, 888, 923, 1061
BcgI	CGANNNNNNTGC	2 cut(s)	791, 825
BciT130I	CCWGG	2 cut(s)	410, 544
BclI	TGATCA	3 cut(s)	117, 669, 709
BcnI	CCSGG	2 cut(s)	42, 451
BcoDI	GTCTC	7 cut(s)	65, 176, 407, 615, 677, 1002, 1057
BfaI	CTAG	3 cut(s)	171, 992, 1073
BfmI	CTRYAG	1 cut(s)	810
BglI	GCCNNNNNGGC	1 cut(s)	1109
BisI	GCNGC	1 cut(s)	582
BlsI	GCNGC	1 cut(s)	583
Bme1390I	CCNGG	4 cut(s)	42, 410, 451, 544
Bme18I	GGWCC	1 cut(s)	365
BmgBI	CACGTC	2 cut(s)	49, 968
BmgT120I	GGNCC	2 cut(s)	150, 365
BmiI	GGNNCC	2 cut(s)	157, 515
BmrFI	CCNGG	4 cut(s)	42, 410, 451, 544
BmsI	GCATC	4 cut(s)	492, 568, 847, 1086
BpmI	CTGGAG	2 cut(s)	392, 977
BpuEI	CTTGAG	1 cut(s)	618
BpuMI	CCSGG	2 cut(s)	42, 451
Bsa29I	ATCGAT	1 cut(s)	564
BsaBI	GATNNNNATC	2 cut(s)	482, 936
BsaI	GGTCTC	1 cut(s)	1057
BsaJI	CCNNGG	3 cut(s)	41, 384, 543
BsaWI	WCCGGW	2 cut(s)	486, 1092
BsaXI	ACNNNNNCTCC	6 cut(s)	305, 335, 540, 570, 1074, 1104
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 87, 1059, 1099
Bse118I	RCCGGY	2 cut(s)	152, 158
Bse1I	ACTGG	1 cut(s)	960
Bse3DI	GCAATG	1 cut(s)	120
Bse8I	GATNNNNATC	2 cut(s)	482, 936
BseAI	TCCGGA	2 cut(s)	486, 1092
BseBI	CCWGG	2 cut(s)	410, 544
BseCI	ATCGAT	1 cut(s)	564
BseDI	CCNNGG	3 cut(s)	41, 384, 543
BseGI	GGATG	5 cut(s)	483, 583, 862, 899, 1101
BseJI	GATNNNNATC	2 cut(s)	482, 936
BseLI	CCNNNNNNNGG	4 cut(s)	43, 87, 1059, 1099
BseMI	GCAATG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	960
BseRI	GAGGAG	1 cut(s)	395
BseSI	GKGCMC	1 cut(s)	915
BseXI	GCAGC	1 cut(s)	593
BshFI	GGCC	3 cut(s)	152, 444, 1103
BshNI	GGYRCC	1 cut(s)	155
BshVI	ATCGAT	1 cut(s)	564
BsiHKAI	GWGCWC	1 cut(s)	1129
BsiSI	CCGG	7 cut(s)	41, 153, 159, 441, 450, 487, 1093
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	4 cut(s)	43, 87, 1059, 1099
BsmAI	GTCTC	7 cut(s)	65, 176, 407, 615, 677, 1002, 1057
BsmFI	GGGAC	1 cut(s)	59
BsmI	GAATGC	2 cut(s)	286, 603
BsnI	GGCC	3 cut(s)	152, 444, 1103
Bso31I	GGTCTC	1 cut(s)	1057
Bsp1286I	GDGCHC	2 cut(s)	915, 1129
Bsp13I	TCCGGA	2 cut(s)	486, 1092
Bsp143I	GATC	7 cut(s)	117, 198, 513, 669, 709, 819, 937
Bsp19I	CCATGG	1 cut(s)	384
BspACI	CCGC	4 cut(s)	59, 162, 284, 584
BspANI	GGCC	3 cut(s)	152, 444, 1103
BspDI	ATCGAT	1 cut(s)	564
BspEI	TCCGGA	2 cut(s)	486, 1092
BspHI	TCATGA	1 cut(s)	672
BspLI	GGNNCC	2 cut(s)	157, 515
BspMAI	CTGCAG	1 cut(s)	814
BspPI	GGATC	3 cut(s)	508, 521, 827
BspT107I	GGYRCC	1 cut(s)	155
BspTNI	GGTCTC	1 cut(s)	1057
BsrDI	GCAATG	1 cut(s)	120
BsrFI	RCCGGY	2 cut(s)	152, 158
BsrI	ACTGG	1 cut(s)	960
BssAI	RCCGGY	2 cut(s)	152, 158
BssECI	CCNNGG	3 cut(s)	41, 384, 543
BssMI	GATC	7 cut(s)	117, 198, 513, 669, 709, 819, 937
BssSI	CACGAG	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	384
Bst2BI	CACGAG	1 cut(s)	121
Bst2UI	CCWGG	2 cut(s)	410, 544
Bst6I	CTCTTC	1 cut(s)	598
BstC8I	GCNNGC	3 cut(s)	160, 586, 1101
BstDSI	CCRYGG	1 cut(s)	384
BstF5I	GGATG	5 cut(s)	483, 583, 862, 899, 1101
BstKTI	GATC	7 cut(s)	120, 201, 516, 672, 712, 822, 940
BstMAI	GTCTC	7 cut(s)	65, 176, 407, 615, 677, 1002, 1057
BstMBI	GATC	7 cut(s)	117, 198, 513, 669, 709, 819, 937
BstMWI	GCNNNNNNNGC	1 cut(s)	1109
BstNI	CCWGG	2 cut(s)	410, 544
BstNSI	RCATGY	2 cut(s)	110, 872
BstSCI	CCNGG	4 cut(s)	40, 408, 449, 542
BstSFI	CTRYAG	1 cut(s)	810
BstSLI	GKGCMC	1 cut(s)	915
BstV1I	GCAGC	1 cut(s)	593
BstX2I	RGATCY	1 cut(s)	513
BstYI	RGATCY	1 cut(s)	513
Bsu15I	ATCGAT	1 cut(s)	564
BsuRI	GGCC	3 cut(s)	152, 444, 1103
BsuTUI	ATCGAT	1 cut(s)	564
BtgI	CCRYGG	1 cut(s)	384
BtrI	CACGTC	2 cut(s)	49, 968
BtsCI	GGATG	5 cut(s)	483, 583, 862, 899, 1101
BtsIMutI	CAGTG	1 cut(s)	953
Cac8I	GCNNGC	3 cut(s)	160, 586, 1101
CciI	TCATGA	1 cut(s)	672
Cfr10I	RCCGGY	2 cut(s)	152, 158
Cfr13I	GGNCC	2 cut(s)	150, 365
ClaI	ATCGAT	1 cut(s)	564
Csp6I	GTAC	3 cut(s)	527, 1008, 1121
CviAII	CATG	9 cut(s)	107, 212, 299, 385, 428, 673, 853, 869, 949
CviQI	GTAC	3 cut(s)	527, 1008, 1121
DpnI	GATC	7 cut(s)	119, 200, 515, 671, 711, 821, 939
DpnII	GATC	7 cut(s)	117, 198, 513, 669, 709, 819, 937
Eam1104I	CTCTTC	1 cut(s)	598
EarI	CTCTTC	1 cut(s)	598
EciI	GGCGGA	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	384
Eco31I	GGTCTC	1 cut(s)	1057
Eco47I	GGWCC	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	408, 542
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	9 cut(s)	110, 215, 302, 388, 431, 676, 856, 872, 952
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	9 cut(s)	106, 211, 298, 384, 427, 672, 852, 868, 948
FauI	CCCGC	2 cut(s)	52, 577
FbaI	TGATCA	3 cut(s)	117, 669, 709
FblI	GTMKAC	1 cut(s)	976
Fnu4HI	GCNGC	1 cut(s)	582
FokI	GGATG	5 cut(s)	470, 590, 869, 906, 1108
Fsp4HI	GCNGC	1 cut(s)	582
FspBI	CTAG	3 cut(s)	171, 992, 1073
GluI	GCNGC	1 cut(s)	582
GsuI	CTGGAG	2 cut(s)	392, 977
HaeIII	GGCC	3 cut(s)	152, 444, 1103
HapII	CCGG	7 cut(s)	41, 153, 159, 441, 450, 487, 1093
Hin1II	CATG	9 cut(s)	110, 215, 302, 388, 431, 676, 856, 872, 952
HincII	GTYRAC	1 cut(s)	874
HindII	GTYRAC	1 cut(s)	874
HinfI	GANTC	5 cut(s)	275, 400, 631, 995, 1031
HpaI	GTTAAC	1 cut(s)	874
HpaII	CCGG	7 cut(s)	41, 153, 159, 441, 450, 487, 1093
HphI	GGTGA	5 cut(s)	157, 270, 278, 679, 790
Hpy166II	GTNNAC	2 cut(s)	874, 977
Hpy188I	TCNGA	2 cut(s)	620, 1062
Hpy188III	TCNNGA	5 cut(s)	121, 487, 635, 673, 1093
Hpy8I	GTNNAC	2 cut(s)	874, 977
HpyAV	CCTTC	3 cut(s)	47, 684, 1097
HpyCH4IV	ACGT	2 cut(s)	48, 967
HpyCH4V	TGCA	7 cut(s)	298, 581, 755, 812, 1041, 1099, 1165
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1109
HpySE526I	ACGT	2 cut(s)	48, 967
Hsp92II	CATG	9 cut(s)	110, 215, 302, 388, 431, 676, 856, 872, 952
Kpn2I	TCCGGA	2 cut(s)	486, 1092
KroI	GCCGGC	1 cut(s)	158
KroNI	GCCGGC	1 cut(s)	160
Ksp22I	TGATCA	3 cut(s)	117, 669, 709
KspAI	GTTAAC	1 cut(s)	874
Kzo9I	GATC	7 cut(s)	117, 198, 513, 669, 709, 819, 937
Lsp1109I	GCAGC	1 cut(s)	593
LweI	GCATC	4 cut(s)	492, 568, 847, 1086
MaeI	CTAG	3 cut(s)	171, 992, 1073
MaeII	ACGT	2 cut(s)	48, 967
MaeIII	GTNAC	4 cut(s)	430, 505, 729, 848
MalI	GATC	7 cut(s)	119, 200, 515, 671, 711, 821, 939
MboI	GATC	7 cut(s)	117, 198, 513, 669, 709, 819, 937
MboII	GAAGA	4 cut(s)	76, 90, 208, 615
MfeI	CAATTG	1 cut(s)	756
MflI	RGATCY	1 cut(s)	513
MhlI	GDGCHC	2 cut(s)	915, 1129
MluCI	AATT	4 cut(s)	83, 639, 756, 985
MlyI	GAGTC	3 cut(s)	625, 1004, 1025
MmeI	TCCRAC	1 cut(s)	1059
MroI	TCCGGA	2 cut(s)	486, 1092
MroNI	GCCGGC	1 cut(s)	158
MroXI	GAANNNNTTC	1 cut(s)	139
MseI	TTAA	2 cut(s)	261, 873
MslI	CAYNNNNRTG	3 cut(s)	665, 841, 947
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	7 cut(s)	41, 153, 159, 441, 450, 487, 1093
MspR9I	CCNGG	4 cut(s)	42, 410, 451, 544
MunI	CAATTG	1 cut(s)	756
Mva1269I	GAATGC	2 cut(s)	286, 603
MvaI	CCWGG	2 cut(s)	410, 544
MwoI	GCNNNNNNNGC	1 cut(s)	1109
NaeI	GCCGGC	1 cut(s)	160
NciI	CCSGG	2 cut(s)	42, 451
NcoI	CCATGG	1 cut(s)	384
NdeII	GATC	7 cut(s)	117, 198, 513, 669, 709, 819, 937
NgoMIV	GCCGGC	1 cut(s)	158
NlaIII	CATG	9 cut(s)	110, 215, 302, 388, 431, 676, 856, 872, 952
NlaIV	GGNNCC	2 cut(s)	157, 515
NmuCI	GTSAC	3 cut(s)	430, 505, 848
NspI	RCATGY	2 cut(s)	110, 872
OliI	CACNNNNGTG	1 cut(s)	665
PagI	TCATGA	1 cut(s)	672
PciI	ACATGT	1 cut(s)	868
PctI	GAATGC	2 cut(s)	286, 603
PdiI	GCCGGC	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	139
PfeI	GAWTC	2 cut(s)	275, 400
PfoI	TCCNGGA	1 cut(s)	408
PkrI	GCNGC	1 cut(s)	583
PleI	GAGTC	3 cut(s)	625, 1003, 1025
PpsI	GAGTC	3 cut(s)	625, 1003, 1025
PscI	ACATGT	1 cut(s)	868
PshBI	ATTAAT	1 cut(s)	261
Psp6I	CCWGG	2 cut(s)	408, 542
PspGI	CCWGG	2 cut(s)	408, 542
PspN4I	GGNNCC	2 cut(s)	157, 515
PspPI	GGNCC	2 cut(s)	150, 365
PstI	CTGCAG	1 cut(s)	814
PsuI	RGATCY	1 cut(s)	513
RsaI	GTAC	3 cut(s)	528, 1009, 1122
RsaNI	GTAC	3 cut(s)	527, 1008, 1121
RseI	CAYNNNNRTG	3 cut(s)	665, 841, 947
SaqAI	TTAA	2 cut(s)	261, 873
SatI	GCNGC	1 cut(s)	582
Sau3AI	GATC	7 cut(s)	117, 198, 513, 669, 709, 819, 937
Sau96I	GGNCC	2 cut(s)	150, 365
SchI	GAGTC	3 cut(s)	625, 1004, 1025
ScrFI	CCNGG	4 cut(s)	42, 410, 451, 544
SduI	GDGCHC	2 cut(s)	915, 1129
SfaNI	GCATC	4 cut(s)	492, 568, 847, 1086
SfcI	CTRYAG	1 cut(s)	810
SinI	GGWCC	1 cut(s)	365
SmiMI	CAYNNNNRTG	3 cut(s)	665, 841, 947
SmlI	CTYRAG	1 cut(s)	633
SmoI	CTYRAG	1 cut(s)	633
Sse9I	AATT	4 cut(s)	83, 639, 756, 985
SsiI	CCGC	4 cut(s)	59, 162, 284, 584
SspMI	CTAG	3 cut(s)	171, 992, 1073
StyD4I	CCNGG	4 cut(s)	40, 408, 449, 542
StyI	CCWWGG	1 cut(s)	384
TaiI	ACGT	2 cut(s)	51, 970
TaqI	TCGA	4 cut(s)	101, 558, 564, 789
TasI	AATT	4 cut(s)	83, 639, 756, 985
TatI	WGTACW	2 cut(s)	526, 1007
TfiI	GAWTC	2 cut(s)	275, 400
Tru1I	TTAA	2 cut(s)	261, 873
Tru9I	TTAA	2 cut(s)	261, 873
TscAI	CASTG	1 cut(s)	960
TseFI	GTSAC	3 cut(s)	430, 505, 848
TseI	GCWGC	1 cut(s)	581
Tsp45I	GTSAC	3 cut(s)	430, 505, 848
TspDTI	ATGAA	3 cut(s)	200, 413, 689
TspGWI	ACGGA	3 cut(s)	526, 609, 1148
TspRI	CASTG	1 cut(s)	960
VpaK11BI	GGWCC	1 cut(s)	365
VspI	ATTAAT	1 cut(s)	261
XapI	RAATTY	1 cut(s)	985
XceI	RCATGY	2 cut(s)	110, 872
XcmI	CCANNNNNNNNNTGG	1 cut(s)	922
XmiI	GTMKAC	1 cut(s)	976
XmnI	GAANNNNTTC	1 cut(s)	139
XspI	CTAG	3 cut(s)	171, 992, 1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.