RchiOBHm_Chr7g0189721

Plays an essential role in chain termination during de novo fatty acid synthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0013671
Physical Location & Seq
Forward (+)
8979648 .. 8981435
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16945

Sequence Viewer

Length: 1008 bp
ATGATCAATGGAAAGAAGGTTAATGGGATTCATGTGGAAGAGGCTGGTTCATTGTTAGGAAACATGAGTAGTGGTATTGAATTAGTTAAAGATAGAGGTAGTGATGCATCTCTTCATTCATGTTTACATGGGAAATTCGTGGAGGATAGGTTTGTATATAGGCAGACATTCGTTATAAGGTCTTATGAGATTGGTCCTGACAAAACTGCCACCATGGAGACACTGATGAACCTTCTACAGGAGACAGCTCTGAATCACGTGACAGGTTCTGGCCTTGCCGGAAATGGTTTCGGGGCTACTCGTGAGATGAGCCTCCGGAAACTTATTTGGGTCGTCACACGAGTCCACATTCAAGTTGAGAGATACAGTCGCTGGGGAGATGTTGTGGAAATTGATACTTGGGTGGATGCAGCAGGCAAAAACGGAATGCGCAGGGATTGGATTATCCGAGACTATCATACTCAAGAAATTATTAGCAGAGCAACAAGCACTTGGGTGATAATGAATAGAGAAACAAGAAGGTTGTCCAAGATTCCTGAACAAGTGAGACAAGAGGTGGCGCCTTTCTACCTAAACAGAGCTGCAATTGCCACTGAGAAAATCGATAGTGAGAAAATTGACAAGCTTACTGATGGAACTGCCGGGAGAATCCGATCAGGCTTAGCACCTAGATGGAGTGACATGGATGCCAACCAGCATGTAAACAATGTGAAATACATTGGATGGATTCTTGAGAGCGTGCCACTCAAAGTGTTAAAAGAATATGACATGACAAGTATGACACTGGAGTTCCGAAGAGAATGTAGGCAATCCAATTTGCTAGAATCATTGACGAGCACAACAGCAAGTTTGGCTCATGAACATCACTGCAACAACAGCAACAACAACTCGATCAATCGCAGACCAGACCTCCAGTACACACACCTGCTTCGGATGCAAGCCGATAAAGCAGAGATAGTGCGAGCAAGAACAGAATGGCATGGCAAACAAAAACATAAATCGAATTGA

Protein Analysis

335

Amino Acids

38.32

Weight (kDa)

9.15

Isoelectric Point (pI)

39.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyl-ACP_TE PF01643 52 - 185 4.9e-37 Acyl-ACP thioesterase N-terminal domain
Acyl-ACP_TE_C PF20791 218 - 327 3e-23 Acyl-ACP thioesterase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013671)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g08660
malus_domestica MD06G1138100.v1.1 MD14G1153700.v1.1
prunus_persica Prupe.5G148400_v2.0.a1
pyrus_communis pycom06g12930 pycom06g12940 pycom14g12780 pycom14g12790
rosa_chinensis RchiOBHm_Chr7g0189721
rosa_laevigata RLG00000004595
rosa_multiflora Rmu_sc0001924.1_g000022
rosa_roxburghii Rroxscaffold_3G00265230
rosa_rugosa Rorug06G0499300
rosa_samantha Rh7AG104600 Rh7BG107000 Rh7CG109100 Rh7DG107600
rosa_wichuraiana Rw7G009050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 176
AarI CACCTGC 1 cut(s) 933
Acc16I TGCGCA 1 cut(s) 431
Acc36I ACCTGC 1 cut(s) 933
AccB1I GGYRCC 1 cut(s) 559
AccIII TCCGGA 1 cut(s) 315
AcsI RAATTY 1 cut(s) 134
AcvI CACGTG 1 cut(s) 259
AcyI GRCGYC 1 cut(s) 560
AfaI GTAC 1 cut(s) 917
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 2 cut(s) 80, 353
AleI CACNNNNGTG 1 cut(s) 494
AluBI AGCT 3 cut(s) 248, 581, 625
AluI AGCT 3 cut(s) 248, 581, 625
Alw21I GWGCWC 1 cut(s) 839
Alw26I GTCTC 4 cut(s) 212, 236, 444, 541
AlwNI CAGNNNCTG 2 cut(s) 269, 372
Aor13HI TCCGGA 1 cut(s) 315
AoxI GGCC 1 cut(s) 271
ApeKI GCWGC 2 cut(s) 410, 581
ApoI RAATTY 1 cut(s) 134
AspLEI GCGC 2 cut(s) 432, 562
AspS9I GGNCC 1 cut(s) 194
AsuC2I CCSGG 1 cut(s) 643
AsuHPI GGTGA 1 cut(s) 508
AvaII GGWCC 1 cut(s) 194
BaeI ACNNNNGTAYC 2 cut(s) 387, 420
BanI GGYRCC 1 cut(s) 559
BauI CACGAG 2 cut(s) 300, 339
BbrPI CACGTG 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 839
BbvI GCAGC 2 cut(s) 422, 568
BccI CCATC 3 cut(s) 626, 666, 717
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 643
BcoDI GTCTC 4 cut(s) 212, 236, 444, 541
BfaI CTAG 2 cut(s) 669, 821
BfmI CTRYAG 1 cut(s) 236
BfoI RGCGCY 1 cut(s) 563
BfuAI ACCTGC 1 cut(s) 933
BisI GCNGC 2 cut(s) 411, 582
BlpI GCTNAGC 1 cut(s) 661
BlsI GCNGC 2 cut(s) 412, 583
Bme1390I CCNGG 1 cut(s) 643
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 561
BmrFI CCNGG 1 cut(s) 643
BmsI GCATC 5 cut(s) 94, 116, 397, 676, 924
BpmI CTGGAG 2 cut(s) 806, 896
Bpu1102I GCTNAGC 1 cut(s) 661
BpuEI CTTGAG 2 cut(s) 447, 752
BpuMI CCSGG 1 cut(s) 643
Bsa29I ATCGAT 1 cut(s) 603
BsaAI YACGTR 1 cut(s) 259
BsaHI GRCGYC 1 cut(s) 560
BsaJI CCNNGG 1 cut(s) 213
BsaWI WCCGGW 1 cut(s) 315
BsaXI ACNNNNNCTCC 6 cut(s) 134, 164, 369, 399, 894, 924
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse1I ACTGG 2 cut(s) 789, 913
BseAI TCCGGA 1 cut(s) 315
BseCI ATCGAT 1 cut(s) 603
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 4 cut(s) 412, 691, 728, 939
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMII CTCAG 1 cut(s) 585
BseNI ACTGG 2 cut(s) 789, 913
BseXI GCAGC 2 cut(s) 422, 568
BseYI CCCAGC 1 cut(s) 372
BshFI GGCC 1 cut(s) 273
BshNI GGYRCC 1 cut(s) 559
BshVI ATCGAT 1 cut(s) 603
BsiHKAI GWGCWC 1 cut(s) 839
BsiSI CCGG 3 cut(s) 279, 316, 642
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 4 cut(s) 212, 236, 444, 541
BsmI GAATGC 1 cut(s) 432
BsnI GGCC 1 cut(s) 273
Bsp1286I GDGCHC 1 cut(s) 839
Bsp13I TCCGGA 1 cut(s) 315
Bsp143I GATC 3 cut(s) 3, 653, 891
Bsp1720I GCTNAGC 1 cut(s) 661
Bsp19I CCATGG 1 cut(s) 213
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 1 cut(s) 586
BspDI ATCGAT 1 cut(s) 603
BspEI TCCGGA 1 cut(s) 315
BspHI TCATGA 1 cut(s) 856
BspLI GGNNCC 1 cut(s) 561
BspMI ACCTGC 1 cut(s) 933
BspT107I GGYRCC 1 cut(s) 559
BsrI ACTGG 2 cut(s) 789, 913
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 3 cut(s) 3, 653, 891
BssNI GRCGYC 1 cut(s) 560
BssSI CACGAG 2 cut(s) 300, 339
BssT1I CCWWGG 1 cut(s) 213
Bst2BI CACGAG 2 cut(s) 300, 339
Bst4CI ACNGT 1 cut(s) 368
Bst6I CTCTTC 3 cut(s) 33, 117, 790
BstACI GRCGYC 1 cut(s) 560
BstBAI YACGTR 1 cut(s) 259
BstC8I GCNNGC 4 cut(s) 415, 740, 939, 963
BstDEI CTNAG 2 cut(s) 594, 661
BstDSI CCRYGG 1 cut(s) 213
BstENI CCTNNNNNAGG 1 cut(s) 236
BstF5I GGATG 4 cut(s) 412, 691, 728, 939
BstH2I RGCGCY 1 cut(s) 563
BstHHI GCGC 2 cut(s) 432, 562
BstKTI GATC 3 cut(s) 6, 656, 894
BstMAI GTCTC 4 cut(s) 212, 236, 444, 541
BstMBI GATC 3 cut(s) 3, 653, 891
BstMWI GCNNNNNNNGC 5 cut(s) 587, 851, 876, 934, 947
BstNSI RCATGY 1 cut(s) 701
BstSCI CCNGG 1 cut(s) 641
BstSFI CTRYAG 1 cut(s) 236
BstV1I GCAGC 2 cut(s) 422, 568
Bsu15I ATCGAT 1 cut(s) 603
BsuRI GGCC 1 cut(s) 273
BsuTUI ATCGAT 1 cut(s) 603
BtgI CCRYGG 1 cut(s) 213
BtsCI GGATG 4 cut(s) 412, 691, 728, 939
BtsI GCAGTG 1 cut(s) 865
BtsIMutI CAGTG 4 cut(s) 221, 591, 782, 865
BveI ACCTGC 1 cut(s) 933
Cac8I GCNNGC 4 cut(s) 415, 740, 939, 963
CaiI CAGNNNCTG 2 cut(s) 269, 372
CciI TCATGA 1 cut(s) 856
CfoI GCGC 2 cut(s) 432, 562
Cfr13I GGNCC 1 cut(s) 194
ClaI ATCGAT 1 cut(s) 603
Csp6I GTAC 1 cut(s) 916
CviQI GTAC 1 cut(s) 916
DdeI CTNAG 2 cut(s) 594, 661
DinI GGCGCC 1 cut(s) 561
DpnI GATC 3 cut(s) 5, 655, 893
DpnII GATC 3 cut(s) 3, 653, 891
Eam1104I CTCTTC 3 cut(s) 33, 117, 790
EarI CTCTTC 3 cut(s) 33, 117, 790
Eco130I CCWWGG 1 cut(s) 213
Eco47I GGWCC 1 cut(s) 194
Eco72I CACGTG 1 cut(s) 259
EcoNI CCTNNNNNAGG 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 213
EcoT22I ATGCAT 1 cut(s) 109
EgeI GGCGCC 1 cut(s) 561
EheI GGCGCC 1 cut(s) 561
ErhI CCWWGG 1 cut(s) 213
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 411, 582
FokI GGATG 4 cut(s) 419, 698, 735, 946
Fsp4HI GCNGC 2 cut(s) 411, 582
FspBI CTAG 2 cut(s) 669, 821
FspI TGCGCA 1 cut(s) 431
GlaI GCGC 2 cut(s) 431, 561
GluI GCNGC 2 cut(s) 411, 582
GsaI CCCAGC 1 cut(s) 376
GsuI CTGGAG 2 cut(s) 806, 896
HaeII RGCGCY 1 cut(s) 563
HaeIII GGCC 1 cut(s) 273
HapII CCGG 3 cut(s) 279, 316, 642
HhaI GCGC 2 cut(s) 432, 562
Hin1I GRCGYC 1 cut(s) 560
Hin6I GCGC 2 cut(s) 430, 560
HinP1I GCGC 2 cut(s) 430, 560
HindIII AAGCTT 1 cut(s) 623
HinfI GANTC 7 cut(s) 28, 253, 342, 532, 648, 727, 824
HpaII CCGG 3 cut(s) 279, 316, 642
HphI GGTGA 1 cut(s) 508
Hpy166II GTNNAC 4 cut(s) 125, 346, 703, 918
Hpy188I TCNGA 5 cut(s) 252, 449, 653, 794, 933
Hpy188III TCNNGA 7 cut(s) 197, 302, 316, 464, 536, 731, 857
Hpy8I GTNNAC 4 cut(s) 125, 346, 703, 918
HpyAV CCTTC 3 cut(s) 10, 242, 513
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 5 cut(s) 107, 410, 584, 870, 937
HpyF10VI GCNNNNNNNGC 5 cut(s) 587, 851, 876, 934, 947
HpyF3I CTNAG 2 cut(s) 594, 661
HpySE526I ACGT 1 cut(s) 258
Hsp92I GRCGYC 1 cut(s) 560
HspAI GCGC 2 cut(s) 430, 560
KasI GGCGCC 1 cut(s) 559
Kpn2I TCCGGA 1 cut(s) 315
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 653, 891
Lsp1109I GCAGC 2 cut(s) 422, 568
LweI GCATC 5 cut(s) 94, 116, 397, 676, 924
MaeI CTAG 2 cut(s) 669, 821
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 3 cut(s) 259, 334, 677
MalI GATC 3 cut(s) 5, 655, 893
MboI GATC 3 cut(s) 3, 653, 891
MboII GAAGA 3 cut(s) 50, 104, 807
MfeI CAATTG 1 cut(s) 585
MhlI GDGCHC 1 cut(s) 839
MluCI AATT 8 cut(s) 80, 134, 390, 468, 585, 615, 814, 1003
Mly113I GGCGCC 1 cut(s) 560
MlyI GAGTC 1 cut(s) 351
MnlI CCTC 6 cut(s) 34, 89, 136, 323, 547, 920
Mph1103I ATGCAT 1 cut(s) 109
MroI TCCGGA 1 cut(s) 315
MseI TTAA 3 cut(s) 21, 87, 755
MslI CAYNNNNRTG 2 cut(s) 494, 670
MspI CCGG 3 cut(s) 279, 316, 642
MspR9I CCNGG 1 cut(s) 643
MunI CAATTG 1 cut(s) 585
Mva1269I GAATGC 1 cut(s) 432
MwoI GCNNNNNNNGC 5 cut(s) 587, 851, 876, 934, 947
NarI GGCGCC 1 cut(s) 560
NciI CCSGG 1 cut(s) 643
NcoI CCATGG 1 cut(s) 213
NdeII GATC 3 cut(s) 3, 653, 891
NlaIV GGNNCC 1 cut(s) 561
NmuCI GTSAC 3 cut(s) 259, 334, 677
NsbI TGCGCA 1 cut(s) 431
NsiI ATGCAT 1 cut(s) 109
NspI RCATGY 1 cut(s) 701
OliI CACNNNNGTG 1 cut(s) 494
PagI TCATGA 1 cut(s) 856
PaqCI CACCTGC 1 cut(s) 933
PctI GAATGC 1 cut(s) 432
PfeI GAWTC 6 cut(s) 28, 253, 532, 648, 727, 824
PkrI GCNGC 2 cut(s) 412, 583
PleI GAGTC 1 cut(s) 350
PluTI GGCGCC 1 cut(s) 563
PmaCI CACGTG 1 cut(s) 259
PmlI CACGTG 1 cut(s) 259
PpsI GAGTC 1 cut(s) 350
Ppu21I YACGTR 1 cut(s) 259
PsiI TTATAA 1 cut(s) 176
PspCI CACGTG 1 cut(s) 259
PspFI CCCAGC 1 cut(s) 372
PspN4I GGNNCC 1 cut(s) 561
PspPI GGNCC 1 cut(s) 194
PstNI CAGNNNCTG 2 cut(s) 269, 372
RsaI GTAC 1 cut(s) 917
RsaNI GTAC 1 cut(s) 916
RseI CAYNNNNRTG 2 cut(s) 494, 670
SaqAI TTAA 3 cut(s) 21, 87, 755
SatI GCNGC 2 cut(s) 411, 582
Sau3AI GATC 3 cut(s) 3, 653, 891
Sau96I GGNCC 1 cut(s) 194
SchI GAGTC 1 cut(s) 351
ScrFI CCNGG 1 cut(s) 643
SduI GDGCHC 1 cut(s) 839
SfaNI GCATC 5 cut(s) 94, 116, 397, 676, 924
SfcI CTRYAG 1 cut(s) 236
SfoI GGCGCC 1 cut(s) 561
SinI GGWCC 1 cut(s) 194
SmiMI CAYNNNNRTG 2 cut(s) 494, 670
SmlI CTYRAG 2 cut(s) 462, 731
SmoI CTYRAG 2 cut(s) 462, 731
Sse9I AATT 8 cut(s) 80, 134, 390, 468, 585, 615, 814, 1003
SspDI GGCGCC 1 cut(s) 559
SspMI CTAG 2 cut(s) 669, 821
StyD4I CCNGG 1 cut(s) 641
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 368
TaiI ACGT 1 cut(s) 261
TaqI TCGA 3 cut(s) 603, 890, 1001
TasI AATT 8 cut(s) 80, 134, 390, 468, 585, 615, 814, 1003
TatI WGTACW 1 cut(s) 915
TfiI GAWTC 6 cut(s) 28, 253, 532, 648, 727, 824
Tru1I TTAA 3 cut(s) 21, 87, 755
Tru9I TTAA 3 cut(s) 21, 87, 755
TscAI CASTG 4 cut(s) 228, 598, 789, 872
TseFI GTSAC 3 cut(s) 259, 334, 677
TseI GCWGC 2 cut(s) 410, 581
Tsp45I GTSAC 3 cut(s) 259, 334, 677
TspDTI ATGAA 7 cut(s) 20, 39, 104, 108, 242, 518, 873
TspGWI ACGGA 1 cut(s) 438
TspRI CASTG 4 cut(s) 228, 598, 789, 872
VpaK11BI GGWCC 1 cut(s) 194
XagI CCTNNNNNAGG 1 cut(s) 236
XapI RAATTY 1 cut(s) 134
XceI RCATGY 1 cut(s) 701
XspI CTAG 2 cut(s) 669, 821
Zsp2I ATGCAT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.