Rh7BG107000

Plays an essential role in chain termination during de novo fatty acid synthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0013671
Physical Location & Seq
Forward (+)
8041083 .. 8043906
2824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG107000.1

Sequence Viewer

Length: 960 bp
ATGGCATCAATGGCAGTGAGAATTAATGCGACGCTATACCTTCCAAGGCACATTTTCAAGGCGGAGAAGAATGACGGCATTGATGTGGCCACCCAAATGGGATTTTATCCTTCGAGGGATAGGGCAACGAACACAAGACAACACCGCAGATTTTCGGTCATGGCTAGTAGTTCTGTTAATCCGAGAAGTCATGTGGACATGATCAATGGAAAGAAGGTTAATGGGATTCATGTGGAAGAGGCTGGTTCATTGTTAGGAAACATGAGTAGTGGTATTGAATTAGTTAAAGATAGAGGTAGTGATGCATCTCTTCATTCATGTTTACATGGGAAATTCGTGGAGGATAGGTATGTATATAGGCAGACATTCGTTATAAGGTCTTATGAGATTGGTCCTGACAAAACTGCCACCATGGAGACACTGATGAACCTTCTACAGGAGACAGCTCTGAATCACGTGACAGGTTCTGGCCTTGCCGGAAATGGTTTCGGGGCTACTCGTGAGATGAGCCTCCGGAAACTTATTTGGGTCGTCACACGAGTCCACATTCAAGTTGAGAGATACAGTCGCTGGGGAGATGTTGTGGAAATTGATACTTGGGTGGATGCAGCAGGCAAAAACGGAATGCGCAGGGATTGGATTATCCGAGACTATCATACTCAAGAAATTATTAGCAGAGCAACAAGCACTTGGGTGATAATGAATAGAGAAACAAGAAGGTTGTCCAAGATTCCTGAACAAGTGAGACAAGAGGTGGCGCCTTTCTACCTAAACAGAGCTGCAATTGCCACTGAGAAAATCGATAGTGAGAAAATTGACAAGCTTACTGATGGAACTGCCGGGAGAATCCGATCAGGCTTAGCACCTAGATGGAGTGACATGGATGCCAACCAGCATGTAAACAATGTGAAATACATTGGATGGATTCTTGAGGTAACTTGGCAATTTTTTGCAATGTAA

Protein Analysis

319

Amino Acids

36.3

Weight (kDa)

9.46

Isoelectric Point (pI)

37.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyl-ACP_TE PF01643 117 - 251 2.9e-37 Acyl-ACP thioesterase N-terminal domain
Acyl-ACP_TE_C PF20791 284 - 313 1.3e-10 Acyl-ACP thioesterase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013671)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g08660
malus_domestica MD06G1138100.v1.1 MD14G1153700.v1.1
prunus_persica Prupe.5G148400_v2.0.a1
pyrus_communis pycom06g12930 pycom06g12940 pycom14g12780 pycom14g12790
rosa_chinensis RchiOBHm_Chr7g0189721
rosa_laevigata RLG00000004595
rosa_multiflora Rmu_sc0001924.1_g000022
rosa_roxburghii Rroxscaffold_3G00265230
rosa_rugosa Rorug06G0499300
rosa_samantha Rh7AG104600 Rh7BG107000 Rh7CG109100 Rh7DG107600
rosa_wichuraiana Rw7G009050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 374
Acc16I TGCGCA 1 cut(s) 629
AccB1I GGYRCC 1 cut(s) 757
AccIII TCCGGA 1 cut(s) 513
AciI CCGC 2 cut(s) 62, 145
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 1 cut(s) 332
AcvI CACGTG 1 cut(s) 457
AcyI GRCGYC 1 cut(s) 758
AfiI CCNNNNNNNGG 1 cut(s) 436
AgsI TTSAA 3 cut(s) 58, 278, 551
AleI CACNNNNGTG 1 cut(s) 692
AluBI AGCT 3 cut(s) 446, 779, 823
AluI AGCT 3 cut(s) 446, 779, 823
Alw26I GTCTC 4 cut(s) 410, 434, 642, 739
AlwNI CAGNNNCTG 2 cut(s) 467, 570
Aor13HI TCCGGA 1 cut(s) 513
AoxI GGCC 2 cut(s) 87, 469
ApeKI GCWGC 2 cut(s) 608, 779
ApoI RAATTY 1 cut(s) 332
AseI ATTAAT 1 cut(s) 24
AspLEI GCGC 2 cut(s) 630, 760
AspS9I GGNCC 1 cut(s) 392
AsuC2I CCSGG 1 cut(s) 841
AsuHPI GGTGA 1 cut(s) 706
AvaII GGWCC 1 cut(s) 392
BaeI ACNNNNGTAYC 2 cut(s) 585, 618
BalI TGGCCA 1 cut(s) 89
BanI GGYRCC 1 cut(s) 757
BauI CACGAG 2 cut(s) 498, 537
BbrPI CACGTG 1 cut(s) 457
BbvI GCAGC 2 cut(s) 620, 766
BccI CCATC 3 cut(s) 824, 864, 915
BceAI ACGGC 1 cut(s) 91
BclI TGATCA 1 cut(s) 201
BcnI CCSGG 1 cut(s) 841
BcoDI GTCTC 4 cut(s) 410, 434, 642, 739
BfaI CTAG 2 cut(s) 165, 867
BfmI CTRYAG 1 cut(s) 434
BfoI RGCGCY 1 cut(s) 761
BisI GCNGC 2 cut(s) 609, 780
BlpI GCTNAGC 1 cut(s) 859
BlsI GCNGC 2 cut(s) 610, 781
Bme1390I CCNGG 1 cut(s) 841
Bme18I GGWCC 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 392
BmiI GGNNCC 1 cut(s) 759
BmrFI CCNGG 1 cut(s) 841
BmsI GCATC 5 cut(s) 14, 292, 314, 595, 874
Bpu1102I GCTNAGC 1 cut(s) 859
BpuEI CTTGAG 2 cut(s) 645, 950
BpuMI CCSGG 1 cut(s) 841
Bsa29I ATCGAT 1 cut(s) 801
BsaAI YACGTR 1 cut(s) 457
BsaHI GRCGYC 1 cut(s) 758
BsaJI CCNNGG 2 cut(s) 44, 411
BsaWI WCCGGW 1 cut(s) 513
BsaXI ACNNNNNCTCC 4 cut(s) 332, 362, 567, 597
Bsc4I CCNNNNNNNGG 1 cut(s) 436
Bse3DI GCAATG 1 cut(s) 960
BseAI TCCGGA 1 cut(s) 513
BseCI ATCGAT 1 cut(s) 801
BseDI CCNNGG 2 cut(s) 44, 411
BseGI GGATG 3 cut(s) 610, 889, 926
BseLI CCNNNNNNNGG 1 cut(s) 436
BseMI GCAATG 1 cut(s) 960
BseMII CTCAG 1 cut(s) 783
BseXI GCAGC 2 cut(s) 620, 766
BseYI CCCAGC 1 cut(s) 570
BshFI GGCC 2 cut(s) 89, 471
BshNI GGYRCC 1 cut(s) 757
BshVI ATCGAT 1 cut(s) 801
BsiSI CCGG 3 cut(s) 477, 514, 840
BslI CCNNNNNNNGG 1 cut(s) 436
BsmAI GTCTC 4 cut(s) 410, 434, 642, 739
BsmI GAATGC 1 cut(s) 630
BsnI GGCC 2 cut(s) 89, 471
Bsp13I TCCGGA 1 cut(s) 513
Bsp143I GATC 2 cut(s) 201, 851
Bsp1720I GCTNAGC 1 cut(s) 859
Bsp19I CCATGG 1 cut(s) 411
BspACI CCGC 2 cut(s) 62, 145
BspANI GGCC 2 cut(s) 89, 471
BspCNI CTCAG 1 cut(s) 784
BspDI ATCGAT 1 cut(s) 801
BspEI TCCGGA 1 cut(s) 513
BspLI GGNNCC 1 cut(s) 759
BspT107I GGYRCC 1 cut(s) 757
BsrDI GCAATG 1 cut(s) 960
BssECI CCNNGG 2 cut(s) 44, 411
BssMI GATC 2 cut(s) 201, 851
BssNI GRCGYC 1 cut(s) 758
BssSI CACGAG 2 cut(s) 498, 537
BssT1I CCWWGG 2 cut(s) 44, 411
Bst2BI CACGAG 2 cut(s) 498, 537
Bst4CI ACNGT 1 cut(s) 566
Bst6I CTCTTC 2 cut(s) 231, 315
BstACI GRCGYC 1 cut(s) 758
BstBAI YACGTR 1 cut(s) 457
BstC8I GCNNGC 1 cut(s) 613
BstDEI CTNAG 2 cut(s) 792, 859
BstDSI CCRYGG 1 cut(s) 411
BstENI CCTNNNNNAGG 1 cut(s) 434
BstF5I GGATG 3 cut(s) 610, 889, 926
BstH2I RGCGCY 1 cut(s) 761
BstHHI GCGC 2 cut(s) 630, 760
BstKTI GATC 2 cut(s) 204, 854
BstMAI GTCTC 4 cut(s) 410, 434, 642, 739
BstMBI GATC 2 cut(s) 201, 851
BstMWI GCNNNNNNNGC 2 cut(s) 11, 785
BstNSI RCATGY 1 cut(s) 899
BstSCI CCNGG 1 cut(s) 839
BstSFI CTRYAG 1 cut(s) 434
BstV1I GCAGC 2 cut(s) 620, 766
BstXI CCANNNNNNTGG 1 cut(s) 97
Bsu15I ATCGAT 1 cut(s) 801
BsuRI GGCC 2 cut(s) 89, 471
BsuTUI ATCGAT 1 cut(s) 801
BtgI CCRYGG 1 cut(s) 411
BtsCI GGATG 3 cut(s) 610, 889, 926
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 3 cut(s) 21, 419, 789
Cac8I GCNNGC 1 cut(s) 613
CaiI CAGNNNCTG 2 cut(s) 467, 570
CfoI GCGC 2 cut(s) 630, 760
Cfr13I GGNCC 1 cut(s) 392
ClaI ATCGAT 1 cut(s) 801
CseI GACGC 1 cut(s) 40
DdeI CTNAG 2 cut(s) 792, 859
DinI GGCGCC 1 cut(s) 759
DpnI GATC 2 cut(s) 203, 853
DpnII GATC 2 cut(s) 201, 851
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 2 cut(s) 231, 315
EarI CTCTTC 2 cut(s) 231, 315
EciI GGCGGA 1 cut(s) 77
Eco130I CCWWGG 2 cut(s) 44, 411
Eco47I GGWCC 1 cut(s) 392
Eco72I CACGTG 1 cut(s) 457
EcoNI CCTNNNNNAGG 1 cut(s) 434
EcoT14I CCWWGG 2 cut(s) 44, 411
EcoT22I ATGCAT 1 cut(s) 307
EgeI GGCGCC 1 cut(s) 759
EheI GGCGCC 1 cut(s) 759
ErhI CCWWGG 2 cut(s) 44, 411
FbaI TGATCA 1 cut(s) 201
Fnu4HI GCNGC 2 cut(s) 609, 780
FokI GGATG 3 cut(s) 617, 896, 933
Fsp4HI GCNGC 2 cut(s) 609, 780
FspBI CTAG 2 cut(s) 165, 867
FspI TGCGCA 1 cut(s) 629
GlaI GCGC 2 cut(s) 629, 759
GluI GCNGC 2 cut(s) 609, 780
GsaI CCCAGC 1 cut(s) 574
HaeII RGCGCY 1 cut(s) 761
HaeIII GGCC 2 cut(s) 89, 471
HapII CCGG 3 cut(s) 477, 514, 840
HgaI GACGC 1 cut(s) 40
HhaI GCGC 2 cut(s) 630, 760
Hin1I GRCGYC 1 cut(s) 758
Hin6I GCGC 2 cut(s) 628, 758
HinP1I GCGC 2 cut(s) 628, 758
HindIII AAGCTT 1 cut(s) 821
HinfI GANTC 6 cut(s) 226, 451, 540, 730, 846, 925
HpaII CCGG 3 cut(s) 477, 514, 840
HphI GGTGA 1 cut(s) 706
Hpy166II GTNNAC 4 cut(s) 196, 323, 544, 901
Hpy188I TCNGA 4 cut(s) 183, 450, 647, 851
Hpy188III TCNNGA 6 cut(s) 395, 500, 514, 662, 734, 929
Hpy8I GTNNAC 4 cut(s) 196, 323, 544, 901
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 5 cut(s) 50, 120, 208, 440, 711
HpyCH4III ACNGT 1 cut(s) 566
HpyCH4IV ACGT 1 cut(s) 456
HpyCH4V TGCA 4 cut(s) 305, 608, 782, 953
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 785
HpyF3I CTNAG 2 cut(s) 792, 859
HpySE526I ACGT 1 cut(s) 456
Hsp92I GRCGYC 1 cut(s) 758
HspAI GCGC 2 cut(s) 628, 758
KasI GGCGCC 1 cut(s) 757
Kpn2I TCCGGA 1 cut(s) 513
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 2 cut(s) 201, 851
Lsp1109I GCAGC 2 cut(s) 620, 766
LweI GCATC 5 cut(s) 14, 292, 314, 595, 874
MaeI CTAG 2 cut(s) 165, 867
MaeII ACGT 1 cut(s) 456
MaeIII GTNAC 4 cut(s) 457, 532, 875, 934
MalI GATC 2 cut(s) 203, 853
MboI GATC 2 cut(s) 201, 851
MboII GAAGA 3 cut(s) 79, 248, 302
MfeI CAATTG 1 cut(s) 783
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 8 cut(s) 21, 278, 332, 588, 666, 783, 813, 944
MluNI TGGCCA 1 cut(s) 89
Mly113I GGCGCC 1 cut(s) 758
MlyI GAGTC 1 cut(s) 549
MnlI CCTC 7 cut(s) 108, 232, 287, 334, 521, 745, 925
Mox20I TGGCCA 1 cut(s) 89
Mph1103I ATGCAT 1 cut(s) 307
MroI TCCGGA 1 cut(s) 513
MscI TGGCCA 1 cut(s) 89
MseI TTAA 4 cut(s) 24, 177, 219, 285
MslI CAYNNNNRTG 4 cut(s) 83, 95, 692, 868
Msp20I TGGCCA 1 cut(s) 89
MspI CCGG 3 cut(s) 477, 514, 840
MspR9I CCNGG 1 cut(s) 841
MunI CAATTG 1 cut(s) 783
Mva1269I GAATGC 1 cut(s) 630
MwoI GCNNNNNNNGC 2 cut(s) 11, 785
NarI GGCGCC 1 cut(s) 758
NciI CCSGG 1 cut(s) 841
NcoI CCATGG 1 cut(s) 411
NdeII GATC 2 cut(s) 201, 851
NlaIV GGNNCC 1 cut(s) 759
NmuCI GTSAC 3 cut(s) 457, 532, 875
NsbI TGCGCA 1 cut(s) 629
NsiI ATGCAT 1 cut(s) 307
NspI RCATGY 1 cut(s) 899
OliI CACNNNNGTG 1 cut(s) 692
PctI GAATGC 1 cut(s) 630
PfeI GAWTC 5 cut(s) 226, 451, 730, 846, 925
PkrI GCNGC 2 cut(s) 610, 781
PleI GAGTC 1 cut(s) 548
PluTI GGCGCC 1 cut(s) 761
PmaCI CACGTG 1 cut(s) 457
PmlI CACGTG 1 cut(s) 457
PpsI GAGTC 1 cut(s) 548
Ppu21I YACGTR 1 cut(s) 457
PshBI ATTAAT 1 cut(s) 24
PsiI TTATAA 1 cut(s) 374
PspCI CACGTG 1 cut(s) 457
PspFI CCCAGC 1 cut(s) 570
PspN4I GGNNCC 1 cut(s) 759
PspPI GGNCC 1 cut(s) 392
PstNI CAGNNNCTG 2 cut(s) 467, 570
RseI CAYNNNNRTG 4 cut(s) 83, 95, 692, 868
SaqAI TTAA 4 cut(s) 24, 177, 219, 285
SatI GCNGC 2 cut(s) 609, 780
Sau3AI GATC 2 cut(s) 201, 851
Sau96I GGNCC 1 cut(s) 392
SchI GAGTC 1 cut(s) 549
ScrFI CCNGG 1 cut(s) 841
SfaNI GCATC 5 cut(s) 14, 292, 314, 595, 874
SfcI CTRYAG 1 cut(s) 434
SfoI GGCGCC 1 cut(s) 759
SinI GGWCC 1 cut(s) 392
SmiMI CAYNNNNRTG 4 cut(s) 83, 95, 692, 868
SmlI CTYRAG 2 cut(s) 660, 929
SmoI CTYRAG 2 cut(s) 660, 929
Sse9I AATT 8 cut(s) 21, 278, 332, 588, 666, 783, 813, 944
SsiI CCGC 2 cut(s) 62, 145
SspDI GGCGCC 1 cut(s) 757
SspMI CTAG 2 cut(s) 165, 867
StyD4I CCNGG 1 cut(s) 839
StyI CCWWGG 2 cut(s) 44, 411
TaaI ACNGT 1 cut(s) 566
TaiI ACGT 1 cut(s) 459
TaqI TCGA 2 cut(s) 113, 801
TaqII GACCGA 1 cut(s) 145
TasI AATT 8 cut(s) 21, 278, 332, 588, 666, 783, 813, 944
TfiI GAWTC 5 cut(s) 226, 451, 730, 846, 925
Tru1I TTAA 4 cut(s) 24, 177, 219, 285
Tru9I TTAA 4 cut(s) 24, 177, 219, 285
TscAI CASTG 3 cut(s) 21, 426, 796
TseFI GTSAC 3 cut(s) 457, 532, 875
TseI GCWGC 2 cut(s) 608, 779
Tsp45I GTSAC 3 cut(s) 457, 532, 875
TspDTI ATGAA 6 cut(s) 218, 237, 302, 306, 440, 716
TspGWI ACGGA 1 cut(s) 636
TspRI CASTG 3 cut(s) 21, 426, 796
VpaK11BI GGWCC 1 cut(s) 392
VspI ATTAAT 1 cut(s) 24
XagI CCTNNNNNAGG 1 cut(s) 434
XapI RAATTY 1 cut(s) 332
XceI RCATGY 1 cut(s) 899
XspI CTAG 2 cut(s) 165, 867
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.