FvH4_5g11671

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015625
Physical Location & Seq
Forward (+)
6612169 .. 6613018
850 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g11671.t1

Sequence Viewer

Length: 624 bp
ATGATGCATCTCCAATTCTCCACTAAGGAACTAATAATGATACCTCAAGTTATCTTGTCAAAAATGGATGATTACATGGTTGAACTTCATGGTGTTAAAGTGAAGGTTAACGTTGTGGATAATGCTACTTTGATTGATGCAAAGATAGCAGAAATTAGGGCTTCGCTGGATACTGCAAGACCTGTTATGGGACTTGATATCAAGGGTGTTACGACAACCGATCCTGATTCAAATTTGAAGGCTTCAATGCTGCTACTTTGTTCTGAAGGTCGTTGCTTGATCTTAGTCCCAAAAATGTATACTCTGTTCGACTATTATCCCAGCAAGTATGGTACTAAACTCCGCGCTCTTCTTGCTGATCCCAATATTTGCTTTTTGGGTATAGACATGGAGACAAGAAGAAAGTATCGTCGGAATGACGAACTGCATGATCTGATGAGGAATGAAGGAGTAGATTTGGGTCATTTTGCAGCCAGGATACTGAAGAAACCTGATCTGGAGAAGGCGAAACTAGCCGGGTTGGGAGCTGAAGTTGGTATTGATGTTAAGCCGCTGAGTGGATCTTGCCCGGATTTGGAATGCAAGAGTTTTCTCAGAGGAAGGGATCAAGCATGCAATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_pol_A_exo1

Protein Analysis

208

Amino Acids

23.1

Weight (kDa)

7.59

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 299
AccII CGCG 1 cut(s) 345
AciI CCGC 2 cut(s) 343, 551
AclI AACGTT 1 cut(s) 111
AclWI GGATC 4 cut(s) 215, 353, 568, 612
AcsI RAATTY 1 cut(s) 232
AcuI CTGAAG 3 cut(s) 285, 503, 549
AfaI GTAC 1 cut(s) 334
AfiI CCNNNNNNNGG 3 cut(s) 188, 557, 574
AgsI TTSAA 4 cut(s) 83, 231, 238, 246
AjnI CCWGG 1 cut(s) 473
AluBI AGCT 1 cut(s) 527
AluI AGCT 1 cut(s) 527
Alw26I GTCTC 1 cut(s) 386
AlwI GGATC 4 cut(s) 215, 353, 568, 612
ApeKI GCWGC 2 cut(s) 250, 470
ApoI RAATTY 1 cut(s) 232
AspLEI GCGC 1 cut(s) 347
AsuC2I CCSGG 2 cut(s) 517, 569
BbvI GCAGC 2 cut(s) 237, 482
BciT130I CCWGG 1 cut(s) 475
BciVI GTATCC 2 cut(s) 163, 471
BcnI CCSGG 2 cut(s) 517, 569
BcoDI GTCTC 1 cut(s) 386
BfaI CTAG 1 cut(s) 512
BfuI GTATCC 2 cut(s) 163, 471
BisI GCNGC 3 cut(s) 251, 471, 551
BlsI GCNGC 3 cut(s) 252, 472, 552
Bme1390I CCNGG 3 cut(s) 475, 517, 569
BmrFI CCNGG 3 cut(s) 475, 517, 569
BmsI GCATC 2 cut(s) 16, 127
BpmI CTGGAG 1 cut(s) 518
BpuEI CTTGAG 1 cut(s) 30
BpuMI CCSGG 2 cut(s) 517, 569
BsaXI ACNNNNNCTCC 2 cut(s) 516, 546
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 557, 574
BseBI CCWGG 1 cut(s) 475
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 3 cut(s) 188, 557, 574
BseMII CTCAG 2 cut(s) 545, 607
BseXI GCAGC 2 cut(s) 237, 482
BseYI CCCAGC 1 cut(s) 320
Bsh1236I CGCG 1 cut(s) 345
BsiSI CCGG 2 cut(s) 516, 569
BslFI GGGAC 2 cut(s) 204, 272
BslI CCNNNNNNNGG 3 cut(s) 188, 557, 574
BsmAI GTCTC 1 cut(s) 386
BsmFI GGGAC 2 cut(s) 204, 272
BsmI GAATGC 1 cut(s) 584
Bsp143I GATC 7 cut(s) 220, 279, 358, 430, 493, 560, 604
BspACI CCGC 2 cut(s) 343, 551
BspCNI CTCAG 2 cut(s) 546, 606
BspFNI CGCG 1 cut(s) 345
BspHI TCATGA 1 cut(s) 620
BspPI GGATC 4 cut(s) 215, 353, 568, 612
BspQI GCTCTTC 1 cut(s) 354
BssMI GATC 7 cut(s) 220, 279, 358, 430, 493, 560, 604
BssNAI GTATAC 1 cut(s) 300
Bst1107I GTATAC 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 475
Bst6I CTCTTC 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 613
BstDEI CTNAG 4 cut(s) 24, 283, 554, 593
BstF5I GGATG 1 cut(s) 73
BstFNI CGCG 1 cut(s) 345
BstHHI GCGC 1 cut(s) 347
BstKTI GATC 7 cut(s) 223, 282, 361, 433, 496, 563, 607
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 7 cut(s) 220, 279, 358, 430, 493, 560, 604
BstMWI GCNNNNNNNGC 3 cut(s) 146, 353, 512
BstNI CCWGG 1 cut(s) 475
BstNSI RCATGY 1 cut(s) 615
BstSCI CCNGG 3 cut(s) 473, 515, 567
BstUI CGCG 1 cut(s) 345
BstV1I GCAGC 2 cut(s) 237, 482
BstX2I RGATCY 1 cut(s) 560
BstYI RGATCY 1 cut(s) 560
BstZ17I GTATAC 1 cut(s) 300
BsuI GTATCC 2 cut(s) 163, 471
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 613
CciI TCATGA 1 cut(s) 620
CfoI GCGC 1 cut(s) 347
Csp6I GTAC 1 cut(s) 333
CviAII CATG 6 cut(s) 76, 89, 388, 428, 612, 621
CviJI RGCY 6 cut(s) 161, 242, 473, 515, 527, 550
CviKI_1 RGCY 6 cut(s) 161, 242, 473, 515, 527, 550
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 4 cut(s) 24, 283, 554, 593
DpnI GATC 7 cut(s) 222, 281, 360, 432, 495, 562, 606
DpnII GATC 7 cut(s) 220, 279, 358, 430, 493, 560, 604
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco32I GATATC 1 cut(s) 199
Eco57I CTGAAG 3 cut(s) 285, 503, 549
EcoRII CCWGG 1 cut(s) 473
EcoRV GATATC 1 cut(s) 199
EcoT22I ATGCAT 1 cut(s) 9
FaeI CATG 6 cut(s) 79, 92, 391, 431, 615, 624
FaqI GGGAC 2 cut(s) 204, 272
FatI CATG 6 cut(s) 75, 88, 387, 427, 611, 620
FblI GTMKAC 1 cut(s) 299
Fnu4HI GCNGC 3 cut(s) 251, 471, 551
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 3 cut(s) 251, 471, 551
FspBI CTAG 1 cut(s) 512
GlaI GCGC 1 cut(s) 346
GluI GCNGC 3 cut(s) 251, 471, 551
GsaI CCCAGC 1 cut(s) 324
GsuI CTGGAG 1 cut(s) 518
HapII CCGG 2 cut(s) 516, 569
HhaI GCGC 1 cut(s) 347
Hin1II CATG 6 cut(s) 79, 92, 391, 431, 615, 624
Hin6I GCGC 1 cut(s) 345
HinP1I GCGC 1 cut(s) 345
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 1 cut(s) 227
HpaI GTTAAC 1 cut(s) 109
HpaII CCGG 2 cut(s) 516, 569
Hpy166II GTNNAC 2 cut(s) 109, 300
Hpy188I TCNGA 4 cut(s) 265, 414, 435, 596
Hpy188III TCNNGA 3 cut(s) 224, 497, 621
Hpy8I GTNNAC 2 cut(s) 109, 300
Hpy99I CGWCG 1 cut(s) 414
HpyAV CCTTC 6 cut(s) 97, 232, 260, 440, 496, 594
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 7 cut(s) 7, 140, 176, 427, 470, 582, 615
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 353, 512
HpyF3I CTNAG 4 cut(s) 24, 283, 554, 593
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 6 cut(s) 79, 92, 391, 431, 615, 624
HspAI GCGC 1 cut(s) 345
KspAI GTTAAC 1 cut(s) 109
Kzo9I GATC 7 cut(s) 220, 279, 358, 430, 493, 560, 604
LguI GCTCTTC 1 cut(s) 354
LmnI GCTCC 1 cut(s) 524
Lsp1109I GCAGC 2 cut(s) 237, 482
LweI GCATC 2 cut(s) 16, 127
MaeI CTAG 1 cut(s) 512
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 208
MalI GATC 7 cut(s) 222, 281, 360, 432, 495, 562, 606
MboI GATC 7 cut(s) 220, 279, 358, 430, 493, 560, 604
MboII GAAGA 3 cut(s) 341, 411, 496
MflI RGATCY 1 cut(s) 560
MluCI AATT 4 cut(s) 14, 153, 232, 616
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 3 cut(s) 54, 432, 590
Mph1103I ATGCAT 1 cut(s) 9
MseI TTAA 3 cut(s) 96, 108, 546
MspA1I CMGCKG 1 cut(s) 553
MspI CCGG 2 cut(s) 516, 569
MspR9I CCNGG 3 cut(s) 475, 517, 569
Mva1269I GAATGC 1 cut(s) 584
MvaI CCWGG 1 cut(s) 475
MvnI CGCG 1 cut(s) 345
MwoI GCNNNNNNNGC 3 cut(s) 146, 353, 512
NciI CCSGG 2 cut(s) 517, 569
NdeII GATC 7 cut(s) 220, 279, 358, 430, 493, 560, 604
NlaIII CATG 6 cut(s) 79, 92, 391, 431, 615, 624
NsiI ATGCAT 1 cut(s) 9
NspI RCATGY 1 cut(s) 615
PaeI GCATGC 1 cut(s) 615
PagI TCATGA 1 cut(s) 620
PciSI GCTCTTC 1 cut(s) 354
PctI GAATGC 1 cut(s) 584
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 3 cut(s) 252, 472, 552
Psp1406I AACGTT 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 473
PspFI CCCAGC 1 cut(s) 320
PspGI CCWGG 1 cut(s) 473
PsrI GAACNNNNNNTAC 2 cut(s) 290, 322
PsuI RGATCY 1 cut(s) 560
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
SapI GCTCTTC 1 cut(s) 354
SaqAI TTAA 3 cut(s) 96, 108, 546
SatI GCNGC 3 cut(s) 251, 471, 551
Sau3AI GATC 7 cut(s) 220, 279, 358, 430, 493, 560, 604
ScrFI CCNGG 3 cut(s) 475, 517, 569
SetI ASST 7 cut(s) 46, 108, 114, 184, 271, 493, 529
SfaNI GCATC 2 cut(s) 16, 127
SmlI CTYRAG 1 cut(s) 45
SmoI CTYRAG 1 cut(s) 45
SphI GCATGC 1 cut(s) 615
Sse9I AATT 4 cut(s) 14, 153, 232, 616
SsiI CCGC 2 cut(s) 343, 551
SspI AATATT 1 cut(s) 367
SspMI CTAG 1 cut(s) 512
StyD4I CCNGG 3 cut(s) 473, 515, 567
TaiI ACGT 1 cut(s) 114
TaqI TCGA 1 cut(s) 309
TasI AATT 4 cut(s) 14, 153, 232, 616
TauI GCSGC 1 cut(s) 553
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 3 cut(s) 96, 108, 546
Tru9I TTAA 3 cut(s) 96, 108, 546
TseI GCWGC 2 cut(s) 250, 470
TspDTI ATGAA 3 cut(s) 77, 459, 609
XapI RAATTY 1 cut(s) 232
XceI RCATGY 1 cut(s) 615
XmiI GTMKAC 1 cut(s) 299
XspI CTAG 1 cut(s) 512
Zsp2I ATGCAT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.