Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0015625

Physical Location & Seq

Genomic Coordinates Forward (+)

4878814 .. 4879279

Gene Structure 466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG069500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAGGGCTTCGCTGGAAACTGCAACACCTGTTATGGGACTTGATATTAAGACTACAACCTGCAATTCTACTGCTTCTGCTTCAAAGCTGCTACTTTGCTCAACTATGATCGCTCCGAACGTCGAAAAAAAGAAATTTTGTCCTGATGGTTTGCGTCGTCAAATGAGGAATGAAGGAGTGGAACTGGGCCATTTTGCGGCTAGGATACTGAAGAAACCCAACCTGGAGACGGTGAAACTAACCGAGTTGGCAACTGAAGTTGGTAATGGTATTGATGTCAAGCCGCTGAGTGGATCCTGTCCGGAGTGGGATGCTCGAGTTTTCTCAGAGGAAGGGATCACGCATGCAATTCATGATGTTTATACTTCCTACCTCATTGGGAAGAAGCTCTTGGGCATGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

14.62

Weight (kDa)

8.37

Isoelectric Point (pI)

22.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015625)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11671 FvH4_6g07631 FvH4_6g07633
pyrus_communis	pycom12g19220
rosa_laevigata	RLG00000004863
rosa_roxburghii	Rroxscaffold_2G00142700 Rroxscaffold_3G00268420
rosa_rugosa	Rorug02G0084300
rosa_samantha	Rh2AG133300 Rh2BG136900 Rh2CG138400 Rh2DG138800 Rh3BG081600 Rh3CG082000 Rh7AG069500 Rh7DG078700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	68
AccIII	TCCGGA	1 cut(s)	301
AciI	CCGC	2 cut(s)	197, 284
AclWI	GGATC	3 cut(s)	288, 301, 344
AcsI	RAATTY	1 cut(s)	134
AcuI	CTGAAG	2 cut(s)	230, 276
AfiI	CCNNNNNNNGG	4 cut(s)	35, 196, 229, 290
AgsI	TTSAA	1 cut(s)	84
AjnI	CCWGG	1 cut(s)	222
AjuI	GAANNNNNNNTTGG	1 cut(s)	374
AluBI	AGCT	2 cut(s)	88, 388
AluI	AGCT	2 cut(s)	88, 388
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	3 cut(s)	288, 301, 344
Ama87I	CYCGRG	1 cut(s)	315
Aor13HI	TCCGGA	1 cut(s)	301
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	1 cut(s)	88
ApoI	RAATTY	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	244
AvaI	CYCGRG	1 cut(s)	315
BamHI	GGATCC	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	75
BccI	CCATC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	224
BciVI	GTATCC	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	68
BfuI	GTATCC	1 cut(s)	198
BisI	GCNGC	3 cut(s)	89, 198, 284
BlsI	GCNGC	3 cut(s)	90, 199, 285
Bme1390I	CCNGG	1 cut(s)	224
BmeT110I	CYCGRG	1 cut(s)	315
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	1 cut(s)	295
BmrFI	CCNGG	1 cut(s)	224
BmrI	ACTGGG	1 cut(s)	194
BmsI	GCATC	1 cut(s)	301
BmuI	ACTGGG	1 cut(s)	194
BpmI	CTGGAG	1 cut(s)	245
BsaWI	WCCGGW	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 196, 229, 290
Bse1I	ACTGG	1 cut(s)	189
BseAI	TCCGGA	1 cut(s)	301
BseBI	CCWGG	1 cut(s)	224
BseGI	GGATG	1 cut(s)	316
BseLI	CCNNNNNNNGG	4 cut(s)	35, 196, 229, 290
BseMII	CTCAG	2 cut(s)	278, 339
BseNI	ACTGG	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	75
BshFI	GGCC	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	315
BsiSI	CCGG	1 cut(s)	302
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	4 cut(s)	35, 196, 229, 290
BsmAI	GTCTC	1 cut(s)	221
BsmBI	CGTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	189
BsoBI	CYCGRG	1 cut(s)	315
Bsp13I	TCCGGA	1 cut(s)	301
Bsp143I	GATC	3 cut(s)	108, 293, 336
BspACI	CCGC	2 cut(s)	197, 284
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	2 cut(s)	279, 338
BspEI	TCCGGA	1 cut(s)	301
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	68
BspPI	GGATC	3 cut(s)	288, 301, 344
BsrI	ACTGG	1 cut(s)	189
BssMI	GATC	3 cut(s)	108, 293, 336
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	1 cut(s)	232
BstC8I	GCNNGC	2 cut(s)	345, 398
BstDEI	CTNAG	2 cut(s)	287, 325
BstF5I	GGATG	1 cut(s)	316
BstKTI	GATC	3 cut(s)	111, 296, 339
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	3 cut(s)	108, 293, 336
BstNI	CCWGG	1 cut(s)	224
BstNSI	RCATGY	2 cut(s)	347, 400
BstSCI	CCNGG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BsuI	GTATCC	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	316
BveI	ACCTGC	1 cut(s)	68
Cac8I	GCNNGC	2 cut(s)	345, 398
CciI	TCATGA	1 cut(s)	352
Cfr13I	GGNCC	1 cut(s)	187
CseI	GACGC	1 cut(s)	143
CviAII	CATG	3 cut(s)	344, 353, 397
CviJI	RGCY	6 cut(s)	8, 88, 189, 200, 283, 388
CviKI_1	RGCY	6 cut(s)	8, 88, 189, 200, 283, 388
DdeI	CTNAG	2 cut(s)	287, 325
DpnI	GATC	3 cut(s)	110, 295, 338
DpnII	GATC	3 cut(s)	108, 293, 336
Eco57I	CTGAAG	2 cut(s)	230, 276
Eco88I	CYCGRG	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	222
Esp3I	CGTCTC	1 cut(s)	221
FaeI	CATG	3 cut(s)	347, 356, 400
FaiI	YATR	6 cut(s)	35, 107, 345, 354, 363, 398
FalI	AAGNNNNNCTT	1 cut(s)	374
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	3 cut(s)	343, 352, 396
Fnu4HI	GCNGC	3 cut(s)	89, 198, 284
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	3 cut(s)	89, 198, 284
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	3 cut(s)	89, 198, 284
GsuI	CTGGAG	1 cut(s)	245
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	1 cut(s)	302
HgaI	GACGC	1 cut(s)	143
Hin1II	CATG	3 cut(s)	347, 356, 400
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	1 cut(s)	244
Hpy188I	TCNGA	2 cut(s)	117, 328
Hpy188III	TCNNGA	3 cut(s)	143, 302, 353
Hpy99I	CGWCG	2 cut(s)	125, 159
HpyAV	CCTTC	2 cut(s)	167, 326
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	3 cut(s)	23, 63, 347
HpyF3I	CTNAG	2 cut(s)	287, 325
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	3 cut(s)	347, 356, 400
Kpn2I	TCCGGA	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	108, 293, 336
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	8 cut(s)	42, 73, 156, 170, 209, 236, 310, 315
Lsp1109I	GCAGC	1 cut(s)	75
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	1 cut(s)	120
MalI	GATC	3 cut(s)	110, 295, 338
MboI	GATC	3 cut(s)	108, 293, 336
MboII	GAAGA	2 cut(s)	223, 394
MflI	RGATCY	1 cut(s)	293
MluCI	AATT	3 cut(s)	64, 134, 348
MnlI	CCTC	3 cut(s)	159, 322, 383
MroI	TCCGGA	1 cut(s)	301
MseI	TTAA	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	286
MspI	CCGG	1 cut(s)	302
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
NdeII	GATC	3 cut(s)	108, 293, 336
NlaIII	CATG	3 cut(s)	347, 356, 400
NlaIV	GGNNCC	1 cut(s)	295
NspI	RCATGY	2 cut(s)	347, 400
PaeI	GCATGC	2 cut(s)	347, 400
PaeR7I	CTCGAG	1 cut(s)	315
PagI	TCATGA	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PkrI	GCNGC	3 cut(s)	90, 199, 285
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	295
PspPI	GGNCC	1 cut(s)	187
PspXI	VCTCGAGB	1 cut(s)	315
PsuI	RGATCY	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	3 cut(s)	89, 198, 284
Sau3AI	GATC	3 cut(s)	108, 293, 336
Sau96I	GGNCC	1 cut(s)	187
ScrFI	CCNGG	1 cut(s)	224
SetI	ASST	7 cut(s)	31, 62, 90, 123, 225, 375, 390
SfaNI	GCATC	1 cut(s)	301
Sfr274I	CTCGAG	1 cut(s)	315
SlaI	CTCGAG	1 cut(s)	315
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
SphI	GCATGC	2 cut(s)	347, 400
Sse9I	AATT	3 cut(s)	64, 134, 348
SsiI	CCGC	2 cut(s)	197, 284
SspMI	CTAG	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	232
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	2 cut(s)	123, 316
TasI	AATT	3 cut(s)	64, 134, 348
TauI	GCSGC	2 cut(s)	200, 286
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TseI	GCWGC	1 cut(s)	88
TspDTI	ATGAA	2 cut(s)	186, 341
XapI	RAATTY	1 cut(s)	134
XceI	RCATGY	2 cut(s)	347, 400
XhoI	CTCGAG	1 cut(s)	315
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.