Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0015625

Physical Location & Seq

Genomic Coordinates Forward (+)

63175784 .. 63176398

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004863

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGATGATTACTTGGTTGAACTTCATGGTGTTAGAGTGAAGGTTAGCCTAGTGGATGATGCTACTTTGGTTGATGAAAAAATACCAGAAATGAGGGCTTCGCTGGAAACTGCAACACCTGTTATGGGACTTGATATTAAGACAACAACCTGCAATTCTACTACTTGGATCTGCTTCAAAGATGCTACTTTGTTCAACTATGATCGCTCCGAACTTCGAGTGGAAGTGGGCCATTTTGCGGCTAGGATACTGAAGAAACCCAACCTGGAGACGGCGAAACTAACCGAGTTGGCAACTGAAGTTGGTAATGGTATTGATGTCAAGCCGCTGAGTGGATCCTGTCAGGAGTGGGATGCTCGAGTTTTCTCAGAGGAAGGGATCACGCATGCAATTCATGATGTTTATACTTCCTACCTATTGGGAAGAAGCTCTTGGGCATGCTCTAAATTCAGCATAGGCTTTCTACATGTCGAATCAACCTTATGTACTAGAGCACTACTCTATTTGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

171

Amino Acids

18.99

Weight (kDa)

5.35

Isoelectric Point (pI)

21.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015625)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11671 FvH4_6g07631 FvH4_6g07633
pyrus_communis	pycom12g19220
rosa_laevigata	RLG00000004863
rosa_roxburghii	Rroxscaffold_2G00142700 Rroxscaffold_3G00268420
rosa_rugosa	Rorug02G0084300
rosa_samantha	Rh2AG133300 Rh2BG136900 Rh2CG138400 Rh2DG138800 Rh3BG081600 Rh3CG082000 Rh7AG069500 Rh7DG078700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	158
AciI	CCGC	2 cut(s)	239, 326
AclWI	GGATC	4 cut(s)	176, 330, 343, 386
AcsI	RAATTY	1 cut(s)	446
AcuI	CTGAAG	2 cut(s)	272, 318
AfaI	GTAC	1 cut(s)	487
AfiI	CCNNNNNNNGG	4 cut(s)	125, 238, 271, 332
AflIII	ACRYGT	1 cut(s)	466
AgsI	TTSAA	4 cut(s)	20, 178, 196, 508
AjnI	CCWGG	1 cut(s)	264
AjuI	GAANNNNNNNTTGG	2 cut(s)	415, 447
AluBI	AGCT	1 cut(s)	429
AluI	AGCT	1 cut(s)	429
Alw21I	GWGCWC	1 cut(s)	496
Alw26I	GTCTC	1 cut(s)	263
AlwI	GGATC	4 cut(s)	176, 330, 343, 386
Ama87I	CYCGRG	1 cut(s)	357
AoxI	GGCC	1 cut(s)	229
ApoI	RAATTY	1 cut(s)	446
AspS9I	GGNCC	1 cut(s)	229
AvaI	CYCGRG	1 cut(s)	357
BamHI	GGATCC	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	496
BceAI	ACGGC	1 cut(s)	288
BciT130I	CCWGG	1 cut(s)	266
BciVI	GTATCC	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	263
BfaI	CTAG	3 cut(s)	50, 243, 489
BfuAI	ACCTGC	1 cut(s)	158
BfuI	GTATCC	1 cut(s)	240
BisI	GCNGC	2 cut(s)	240, 326
BlsI	GCNGC	2 cut(s)	241, 327
Bme1390I	CCNGG	1 cut(s)	266
BmeT110I	CYCGRG	1 cut(s)	357
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	1 cut(s)	337
BmrFI	CCNGG	1 cut(s)	266
BmsI	GCATC	3 cut(s)	49, 172, 343
BplI	GAGNNNNNCTC	1 cut(s)	483
BpmI	CTGGAG	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	4 cut(s)	125, 238, 271, 332
BseBI	CCWGG	1 cut(s)	266
BseGI	GGATG	3 cut(s)	10, 61, 358
BseLI	CCNNNNNNNGG	4 cut(s)	125, 238, 271, 332
BseMII	CTCAG	2 cut(s)	320, 381
BshFI	GGCC	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	496
BsiHKCI	CYCGRG	1 cut(s)	357
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	4 cut(s)	125, 238, 271, 332
BsmAI	GTCTC	1 cut(s)	263
BsmBI	CGTCTC	1 cut(s)	263
BsmFI	GGGAC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	231
BsoBI	CYCGRG	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp143I	GATC	4 cut(s)	168, 202, 335, 378
BspACI	CCGC	2 cut(s)	239, 326
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	2 cut(s)	321, 380
BspHI	TCATGA	1 cut(s)	394
BspLI	GGNNCC	1 cut(s)	337
BspMI	ACCTGC	1 cut(s)	158
BspPI	GGATC	4 cut(s)	176, 330, 343, 386
BssMI	GATC	4 cut(s)	168, 202, 335, 378
Bst2UI	CCWGG	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	387, 439
BstDEI	CTNAG	2 cut(s)	329, 367
BstF5I	GGATG	3 cut(s)	10, 61, 358
BstKTI	GATC	4 cut(s)	171, 205, 338, 381
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	4 cut(s)	168, 202, 335, 378
BstNI	CCWGG	1 cut(s)	266
BstNSI	RCATGY	3 cut(s)	389, 441, 470
BstSCI	CCNGG	1 cut(s)	264
BstX2I	RGATCY	2 cut(s)	168, 335
BstYI	RGATCY	2 cut(s)	168, 335
BsuI	GTATCC	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	231
BtsCI	GGATG	3 cut(s)	10, 61, 358
BveI	ACCTGC	1 cut(s)	158
Cac8I	GCNNGC	2 cut(s)	387, 439
CciI	TCATGA	1 cut(s)	394
Cfr13I	GGNCC	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	486
CviAII	CATG	5 cut(s)	26, 386, 395, 438, 467
CviJI	RGCY	7 cut(s)	48, 98, 231, 242, 325, 429, 459
CviKI_1	RGCY	7 cut(s)	48, 98, 231, 242, 325, 429, 459
CviQI	GTAC	1 cut(s)	486
DdeI	CTNAG	2 cut(s)	329, 367
DpnI	GATC	4 cut(s)	170, 204, 337, 380
DpnII	GATC	4 cut(s)	168, 202, 335, 378
Eco57I	CTGAAG	2 cut(s)	272, 318
Eco88I	CYCGRG	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	264
Esp3I	CGTCTC	1 cut(s)	263
FaeI	CATG	5 cut(s)	29, 389, 398, 441, 470
FalI	AAGNNNNNCTT	2 cut(s)	415, 447
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	5 cut(s)	25, 385, 394, 437, 466
Fnu4HI	GCNGC	2 cut(s)	240, 326
FokI	GGATG	3 cut(s)	17, 68, 365
Fsp4HI	GCNGC	2 cut(s)	240, 326
FspBI	CTAG	3 cut(s)	50, 243, 489
GluI	GCNGC	2 cut(s)	240, 326
GsuI	CTGGAG	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	231
Hin1II	CATG	5 cut(s)	29, 389, 398, 441, 470
HinfI	GANTC	1 cut(s)	473
Hpy188I	TCNGA	2 cut(s)	211, 370
Hpy188III	TCNNGA	2 cut(s)	344, 395
HpyAV	CCTTC	2 cut(s)	34, 368
HpyCH4V	TGCA	3 cut(s)	113, 153, 389
HpyF3I	CTNAG	2 cut(s)	329, 367
Hsp92II	CATG	5 cut(s)	29, 389, 398, 441, 470
Kzo9I	GATC	4 cut(s)	168, 202, 335, 378
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	8 cut(s)	89, 99, 132, 163, 251, 278, 329, 352
LweI	GCATC	3 cut(s)	49, 172, 343
MaeI	CTAG	3 cut(s)	50, 243, 489
MalI	GATC	4 cut(s)	170, 204, 337, 380
MboI	GATC	4 cut(s)	168, 202, 335, 378
MboII	GAAGA	2 cut(s)	265, 435
MflI	RGATCY	2 cut(s)	168, 335
MhlI	GDGCHC	1 cut(s)	496
MluCI	AATT	3 cut(s)	154, 390, 446
MnlI	CCTC	2 cut(s)	87, 364
MseI	TTAA	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	328
MspR9I	CCNGG	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	266
NdeII	GATC	4 cut(s)	168, 202, 335, 378
NlaIII	CATG	5 cut(s)	29, 389, 398, 441, 470
NlaIV	GGNNCC	1 cut(s)	337
NspI	RCATGY	3 cut(s)	389, 441, 470
PaeI	GCATGC	2 cut(s)	389, 441
PaeR7I	CTCGAG	1 cut(s)	357
PagI	TCATGA	1 cut(s)	394
PciI	ACATGT	1 cut(s)	466
PfeI	GAWTC	1 cut(s)	473
PkrI	GCNGC	2 cut(s)	241, 327
PscI	ACATGT	1 cut(s)	466
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	337
PspPI	GGNCC	1 cut(s)	229
PspXI	VCTCGAGB	1 cut(s)	357
PsuI	RGATCY	2 cut(s)	168, 335
RsaI	GTAC	1 cut(s)	487
RsaNI	GTAC	1 cut(s)	486
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	2 cut(s)	240, 326
Sau3AI	GATC	4 cut(s)	168, 202, 335, 378
Sau96I	GGNCC	1 cut(s)	229
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	496
SetI	ASST	7 cut(s)	45, 121, 152, 267, 417, 431, 482
SfaNI	GCATC	3 cut(s)	49, 172, 343
Sfr274I	CTCGAG	1 cut(s)	357
SlaI	CTCGAG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	357
SmoI	CTYRAG	1 cut(s)	357
SphI	GCATGC	2 cut(s)	389, 441
Sse9I	AATT	3 cut(s)	154, 390, 446
SsiI	CCGC	2 cut(s)	239, 326
SspMI	CTAG	3 cut(s)	50, 243, 489
StyD4I	CCNGG	1 cut(s)	264
TaqI	TCGA	3 cut(s)	217, 358, 471
TasI	AATT	3 cut(s)	154, 390, 446
TatI	WGTACW	1 cut(s)	485
TauI	GCSGC	2 cut(s)	242, 328
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TspDTI	ATGAA	3 cut(s)	14, 90, 383
XapI	RAATTY	1 cut(s)	446
XceI	RCATGY	3 cut(s)	389, 441, 470
XhoI	CTCGAG	1 cut(s)	357
XspI	CTAG	3 cut(s)	50, 243, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.