Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0015625

Physical Location & Seq

Genomic Coordinates Reverse (-)

6262897 .. 6263452

Gene Structure 556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG078700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGATAATTACTTGGTTGAACTTCATGGTGTTAAAGTGAAGGTTATCGTAGTGGATGATGCTACTTTACTTGATGAAAAAATACCAGAAATGAGGGCTTCGCTGGAAACTGCAACACCTGTTATGGGACTTGATATTAAGACTACAACCTGCAATTCTACTGCTTCTGCTTCAAAGCTGCTACTTTGCTCAACTATGATCGCTCCGAACGTCGAAAAAAAGAAATTTTGTCCTGATGGTTTGCGTCGTCAAATGAGGAATGAAGGAGTGGAACTGGGCCATTTTGAGGCTAGGATACTGAAGAAACCCAACCTGGAGACGGTGAAACTAACCGAGTTGGCAACTGAAGTTGGTAATGGTATTGATGTCAAGCCGCTGAGTGGATCCTGTCCGGAGTGGGATGCTCGAGTTTTCTCAGAGGAAGGGATCACGCATGCAATTCATGATGTTTATACTTCCTACCTCATTGGGAAGAAGCTCTTGGGCATGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

164

Amino Acids

18.06

Weight (kDa)

5.83

Isoelectric Point (pI)

17.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015625)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11671 FvH4_6g07631 FvH4_6g07633
pyrus_communis	pycom12g19220
rosa_laevigata	RLG00000004863
rosa_roxburghii	Rroxscaffold_2G00142700 Rroxscaffold_3G00268420
rosa_rugosa	Rorug02G0084300
rosa_samantha	Rh2AG133300 Rh2BG136900 Rh2CG138400 Rh2DG138800 Rh3BG081600 Rh3CG082000 Rh7AG069500 Rh7DG078700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	158
AccIII	TCCGGA	1 cut(s)	391
AciI	CCGC	1 cut(s)	374
AclWI	GGATC	3 cut(s)	378, 391, 434
AcsI	RAATTY	1 cut(s)	224
AcuI	CTGAAG	2 cut(s)	320, 366
AfiI	CCNNNNNNNGG	4 cut(s)	125, 286, 319, 380
AgsI	TTSAA	2 cut(s)	20, 174
AjnI	CCWGG	1 cut(s)	312
AjuI	GAANNNNNNNTTGG	1 cut(s)	464
AluBI	AGCT	2 cut(s)	178, 478
AluI	AGCT	2 cut(s)	178, 478
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	3 cut(s)	378, 391, 434
Ama87I	CYCGRG	1 cut(s)	405
Aor13HI	TCCGGA	1 cut(s)	391
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	1 cut(s)	178
ApoI	RAATTY	1 cut(s)	224
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	334
AvaI	CYCGRG	1 cut(s)	405
BamHI	GGATCC	1 cut(s)	383
BbvI	GCAGC	1 cut(s)	165
BccI	CCATC	1 cut(s)	230
BciT130I	CCWGG	1 cut(s)	314
BciVI	GTATCC	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	1 cut(s)	291
BfuAI	ACCTGC	1 cut(s)	158
BfuI	GTATCC	1 cut(s)	288
BisI	GCNGC	2 cut(s)	179, 374
BlsI	GCNGC	2 cut(s)	180, 375
Bme1390I	CCNGG	1 cut(s)	314
BmeT110I	CYCGRG	1 cut(s)	405
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	385
BmrFI	CCNGG	1 cut(s)	314
BmrI	ACTGGG	1 cut(s)	284
BmsI	GCATC	2 cut(s)	49, 391
BmuI	ACTGGG	1 cut(s)	284
BpmI	CTGGAG	1 cut(s)	335
BsaWI	WCCGGW	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	4 cut(s)	125, 286, 319, 380
Bse1I	ACTGG	1 cut(s)	279
BseAI	TCCGGA	1 cut(s)	391
BseBI	CCWGG	1 cut(s)	314
BseGI	GGATG	2 cut(s)	61, 406
BseLI	CCNNNNNNNGG	4 cut(s)	125, 286, 319, 380
BseMII	CTCAG	2 cut(s)	368, 429
BseNI	ACTGG	1 cut(s)	279
BseXI	GCAGC	1 cut(s)	165
BshFI	GGCC	1 cut(s)	279
BsiHKCI	CYCGRG	1 cut(s)	405
BsiSI	CCGG	1 cut(s)	392
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	4 cut(s)	125, 286, 319, 380
BsmAI	GTCTC	1 cut(s)	311
BsmBI	CGTCTC	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	279
BsoBI	CYCGRG	1 cut(s)	405
Bsp13I	TCCGGA	1 cut(s)	391
Bsp143I	GATC	3 cut(s)	198, 383, 426
BspACI	CCGC	1 cut(s)	374
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	2 cut(s)	369, 428
BspEI	TCCGGA	1 cut(s)	391
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	1 cut(s)	385
BspMI	ACCTGC	1 cut(s)	158
BspPI	GGATC	3 cut(s)	378, 391, 434
BsrI	ACTGG	1 cut(s)	279
BssMI	GATC	3 cut(s)	198, 383, 426
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	1 cut(s)	322
BstC8I	GCNNGC	2 cut(s)	435, 488
BstDEI	CTNAG	2 cut(s)	377, 415
BstF5I	GGATG	2 cut(s)	61, 406
BstKTI	GATC	3 cut(s)	201, 386, 429
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	3 cut(s)	198, 383, 426
BstNI	CCWGG	1 cut(s)	314
BstNSI	RCATGY	2 cut(s)	437, 490
BstSCI	CCNGG	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	165
BstX2I	RGATCY	1 cut(s)	383
BstYI	RGATCY	1 cut(s)	383
BsuI	GTATCC	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	61, 406
BveI	ACCTGC	1 cut(s)	158
Cac8I	GCNNGC	2 cut(s)	435, 488
CciI	TCATGA	1 cut(s)	442
Cfr13I	GGNCC	1 cut(s)	277
CseI	GACGC	1 cut(s)	233
CviAII	CATG	4 cut(s)	26, 434, 443, 487
CviJI	RGCY	6 cut(s)	98, 178, 279, 290, 373, 478
CviKI_1	RGCY	6 cut(s)	98, 178, 279, 290, 373, 478
DdeI	CTNAG	2 cut(s)	377, 415
DpnI	GATC	3 cut(s)	200, 385, 428
DpnII	GATC	3 cut(s)	198, 383, 426
Eco57I	CTGAAG	2 cut(s)	320, 366
Eco88I	CYCGRG	1 cut(s)	405
EcoRII	CCWGG	1 cut(s)	312
Esp3I	CGTCTC	1 cut(s)	311
FaeI	CATG	4 cut(s)	29, 437, 446, 490
FaiI	YATR	7 cut(s)	27, 125, 197, 435, 444, 453, 488
FalI	AAGNNNNNCTT	1 cut(s)	464
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	4 cut(s)	25, 433, 442, 486
Fnu4HI	GCNGC	2 cut(s)	179, 374
FokI	GGATG	2 cut(s)	68, 413
Fsp4HI	GCNGC	2 cut(s)	179, 374
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	2 cut(s)	179, 374
GsuI	CTGGAG	1 cut(s)	335
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	1 cut(s)	392
HgaI	GACGC	1 cut(s)	233
Hin1II	CATG	4 cut(s)	29, 437, 446, 490
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	1 cut(s)	334
Hpy188I	TCNGA	2 cut(s)	207, 418
Hpy188III	TCNNGA	3 cut(s)	233, 392, 443
Hpy99I	CGWCG	2 cut(s)	215, 249
HpyAV	CCTTC	3 cut(s)	34, 257, 416
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	3 cut(s)	113, 153, 437
HpyF3I	CTNAG	2 cut(s)	377, 415
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	4 cut(s)	29, 437, 446, 490
Kpn2I	TCCGGA	1 cut(s)	391
Kzo9I	GATC	3 cut(s)	198, 383, 426
LmnI	GCTCC	1 cut(s)	208
Lsp1109I	GCAGC	1 cut(s)	165
LweI	GCATC	2 cut(s)	49, 391
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	1 cut(s)	210
MalI	GATC	3 cut(s)	200, 385, 428
MboI	GATC	3 cut(s)	198, 383, 426
MboII	GAAGA	2 cut(s)	313, 484
MflI	RGATCY	1 cut(s)	383
MluCI	AATT	4 cut(s)	7, 154, 224, 438
MnlI	CCTC	5 cut(s)	87, 249, 280, 412, 473
MroI	TCCGGA	1 cut(s)	391
MseI	TTAA	2 cut(s)	33, 138
MspA1I	CMGCKG	1 cut(s)	376
MspI	CCGG	1 cut(s)	392
MspR9I	CCNGG	1 cut(s)	314
MvaI	CCWGG	1 cut(s)	314
NdeII	GATC	3 cut(s)	198, 383, 426
NlaIII	CATG	4 cut(s)	29, 437, 446, 490
NlaIV	GGNNCC	1 cut(s)	385
NspI	RCATGY	2 cut(s)	437, 490
PaeI	GCATGC	2 cut(s)	437, 490
PaeR7I	CTCGAG	1 cut(s)	405
PagI	TCATGA	1 cut(s)	442
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PkrI	GCNGC	2 cut(s)	180, 375
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	385
PspPI	GGNCC	1 cut(s)	277
PspXI	VCTCGAGB	1 cut(s)	405
PsuI	RGATCY	1 cut(s)	383
SaqAI	TTAA	2 cut(s)	33, 138
SatI	GCNGC	2 cut(s)	179, 374
Sau3AI	GATC	3 cut(s)	198, 383, 426
Sau96I	GGNCC	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	314
SetI	ASST	8 cut(s)	45, 121, 152, 180, 213, 315, 465, 480
SfaNI	GCATC	2 cut(s)	49, 391
Sfr274I	CTCGAG	1 cut(s)	405
SlaI	CTCGAG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
SphI	GCATGC	2 cut(s)	437, 490
Sse9I	AATT	4 cut(s)	7, 154, 224, 438
SsiI	CCGC	1 cut(s)	374
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	312
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	2 cut(s)	213, 406
TasI	AATT	4 cut(s)	7, 154, 224, 438
TauI	GCSGC	1 cut(s)	376
Tru1I	TTAA	2 cut(s)	33, 138
Tru9I	TTAA	2 cut(s)	33, 138
TseI	GCWGC	1 cut(s)	178
TspDTI	ATGAA	4 cut(s)	14, 90, 276, 431
XapI	RAATTY	1 cut(s)	224
XceI	RCATGY	2 cut(s)	437, 490
XhoI	CTCGAG	1 cut(s)	405
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.