Rroxscaffold_3G00268420

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0015625
Physical Location & Seq
Forward (+)
61489994 .. 61490353
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00268420.1

Sequence Viewer

Length: 360 bp
ATGATCGCTCCGAACGTCGTACTAAACTCGATGCACTTTTTGCTGATTACAGTATTTGCTTTTGGGTATGGAATTAAGGAAAAAAAGAAATTTTGTCCTGATGGTTTGCGTCGTCAAATGAGGAATGAAGGAGTGGAACTGGGCCATTTTGCGGCTAGGATACTGAAGAAACCCAACCTGGAGATGGCGAAACTAACCGAGTTGGCAACTGAAGTTGGTAATGGTATTGATGTCAAGCCGCTGAGTGGATCCTGTCCGGAGTGGGATGCTCGAGTTTTCTCAGAGGAAGGGATCACGCATGCAATTCATGATGTTTATACTTCCTACCTCATTGGGAAGAAGCTCTTTGGTATGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.31

Weight (kDa)

8.58

Isoelectric Point (pI)

27.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 256
AciI CCGC 2 cut(s) 152, 239
AclWI GGATC 3 cut(s) 243, 256, 299
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 2 cut(s) 185, 231
AfaI GTAC 1 cut(s) 21
AfiI CCNNNNNNNGG 3 cut(s) 151, 184, 245
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 1 cut(s) 343
AluI AGCT 1 cut(s) 343
AlwI GGATC 3 cut(s) 243, 256, 299
Ama87I CYCGRG 1 cut(s) 270
Aor13HI TCCGGA 1 cut(s) 256
AoxI GGCC 1 cut(s) 142
ApoI RAATTY 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 142
AvaI CYCGRG 1 cut(s) 270
BamHI GGATCC 1 cut(s) 248
BccI CCATC 2 cut(s) 95, 178
BciT130I CCWGG 1 cut(s) 179
BciVI GTATCC 1 cut(s) 153
BfaI CTAG 1 cut(s) 156
BfuI GTATCC 1 cut(s) 153
BisI GCNGC 2 cut(s) 153, 239
BlsI GCNGC 2 cut(s) 154, 240
Bme1390I CCNGG 1 cut(s) 179
BmeT110I CYCGRG 1 cut(s) 270
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 179
BmrI ACTGGG 1 cut(s) 149
BmsI GCATC 2 cut(s) 21, 256
BmuI ACTGGG 1 cut(s) 149
BpmI CTGGAG 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 3 cut(s) 151, 184, 245
Bse1I ACTGG 1 cut(s) 144
BseAI TCCGGA 1 cut(s) 256
BseBI CCWGG 1 cut(s) 179
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 3 cut(s) 151, 184, 245
BseMII CTCAG 2 cut(s) 233, 294
BseNI ACTGG 1 cut(s) 144
BshFI GGCC 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 270
BsiSI CCGG 1 cut(s) 257
BslI CCNNNNNNNGG 3 cut(s) 151, 184, 245
BsnI GGCC 1 cut(s) 144
BsoBI CYCGRG 1 cut(s) 270
Bsp13I TCCGGA 1 cut(s) 256
Bsp143I GATC 3 cut(s) 3, 248, 291
BspACI CCGC 2 cut(s) 152, 239
BspANI GGCC 1 cut(s) 144
BspCNI CTCAG 2 cut(s) 234, 293
BspEI TCCGGA 1 cut(s) 256
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 250
BspPI GGATC 3 cut(s) 243, 256, 299
BsrI ACTGG 1 cut(s) 144
BssMI GATC 3 cut(s) 3, 248, 291
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 52
BstAPI GCANNNNNTGC 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 300
BstDEI CTNAG 2 cut(s) 242, 280
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 3 cut(s) 6, 251, 294
BstMBI GATC 3 cut(s) 3, 248, 291
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNI CCWGG 1 cut(s) 179
BstNSI RCATGY 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 248
BstYI RGATCY 1 cut(s) 248
BsuI GTATCC 1 cut(s) 153
BsuRI GGCC 1 cut(s) 144
BtsCI GGATG 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 300
CciI TCATGA 1 cut(s) 307
Cfr13I GGNCC 1 cut(s) 142
CseI GACGC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 20
CviAII CATG 2 cut(s) 299, 308
CviJI RGCY 4 cut(s) 144, 155, 238, 343
CviKI_1 RGCY 4 cut(s) 144, 155, 238, 343
CviQI GTAC 1 cut(s) 20
DdeI CTNAG 2 cut(s) 242, 280
DpnI GATC 3 cut(s) 5, 250, 293
DpnII GATC 3 cut(s) 3, 248, 291
Eco57I CTGAAG 2 cut(s) 185, 231
Eco88I CYCGRG 1 cut(s) 270
EcoRII CCWGG 1 cut(s) 177
FaeI CATG 2 cut(s) 302, 311
FaiI YATR 5 cut(s) 69, 300, 309, 318, 353
FalI AAGNNNNNCTT 1 cut(s) 329
FatI CATG 2 cut(s) 298, 307
Fnu4HI GCNGC 2 cut(s) 153, 239
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 2 cut(s) 153, 239
FspBI CTAG 1 cut(s) 156
GluI GCNGC 2 cut(s) 153, 239
GsuI CTGGAG 1 cut(s) 200
HaeIII GGCC 1 cut(s) 144
HapII CCGG 1 cut(s) 257
HgaI GACGC 1 cut(s) 98
Hin1II CATG 2 cut(s) 302, 311
HpaII CCGG 1 cut(s) 257
Hpy188I TCNGA 2 cut(s) 12, 283
Hpy188III TCNNGA 3 cut(s) 98, 257, 308
Hpy99I CGWCG 2 cut(s) 20, 114
HpyAV CCTTC 2 cut(s) 122, 281
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 2 cut(s) 34, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 2 cut(s) 242, 280
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 2 cut(s) 302, 311
Kpn2I TCCGGA 1 cut(s) 256
Kzo9I GATC 3 cut(s) 3, 248, 291
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 6 cut(s) 111, 125, 164, 191, 265, 270
LweI GCATC 2 cut(s) 21, 256
MaeI CTAG 1 cut(s) 156
MaeII ACGT 1 cut(s) 15
MalI GATC 3 cut(s) 5, 250, 293
MboI GATC 3 cut(s) 3, 248, 291
MboII GAAGA 2 cut(s) 178, 349
MflI RGATCY 1 cut(s) 248
MluCI AATT 3 cut(s) 72, 89, 303
MnlI CCTC 3 cut(s) 114, 277, 338
MroI TCCGGA 1 cut(s) 256
MseI TTAA 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 241
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 179
MvaI CCWGG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 40
NdeII GATC 3 cut(s) 3, 248, 291
NlaIII CATG 2 cut(s) 302, 311
NlaIV GGNNCC 1 cut(s) 250
NspI RCATGY 1 cut(s) 302
PaeI GCATGC 1 cut(s) 302
PaeR7I CTCGAG 1 cut(s) 270
PagI TCATGA 1 cut(s) 307
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PkrI GCNGC 2 cut(s) 154, 240
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 250
PspPI GGNCC 1 cut(s) 142
PspXI VCTCGAGB 1 cut(s) 270
PsuI RGATCY 1 cut(s) 248
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 2 cut(s) 153, 239
Sau3AI GATC 3 cut(s) 3, 248, 291
Sau96I GGNCC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 179
SetI ASST 4 cut(s) 18, 180, 330, 345
SfaNI GCATC 2 cut(s) 21, 256
Sfr274I CTCGAG 1 cut(s) 270
SlaI CTCGAG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 270
SmoI CTYRAG 1 cut(s) 270
SphI GCATGC 1 cut(s) 302
Sse9I AATT 3 cut(s) 72, 89, 303
SsiI CCGC 2 cut(s) 152, 239
SspMI CTAG 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 52
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 29, 271
TasI AATT 3 cut(s) 72, 89, 303
TauI GCSGC 2 cut(s) 155, 241
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TspDTI ATGAA 2 cut(s) 141, 296
XapI RAATTY 1 cut(s) 89
XceI RCATGY 1 cut(s) 302
XcmI CCANNNNNNNNNTGG 1 cut(s) 181
XhoI CTCGAG 1 cut(s) 270
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.