Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015625

Physical Location & Seq

Genomic Coordinates Forward (+)

4589730 .. 4590456

Gene Structure 727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07633.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGATACCTTACCAGTTTCTGTCAAAAATGCGTCCTTATGCAGTTGAAGTTCATGGTGTCAAAGTAAATGTAAGTGTCGTGGCGGAAGACGATCGGTTGATAGTAGAAAAACTACGTGAATTAAGGACGTTGCTCAAACGGGGCGTTGTGGGAGTTGATATTAAGATGATGAGAGACAAGGTTCCTTCAGTGTTGCTTCTTTGTGTTGAAGGTCATTGCCTGATCATCCCTATGTTTTTTTGTTGGCTCATTTCAAGTCGTCCAAAACAGGTTCCTGAAACTGAACTCAAACAGCTCCTTTCTGATCGGACTATTTGTTTTGTGGCTCCAAACTTGGGAAGGTTAAAAGAGATGACTGATCGTCTTTACAGTGCTTTTCCTTATGATGGAGCTTTGTCACTAAATATAGTGAATACAGTTGTGGAACTGCCTCAGTTGGCGGCCATGGTACTGAAGAAACCGAGTCTTCAAAAGAAAGGGCTGCATGAGTTGTCAGGAGAAATCGGAATGGATATCAAGCCAGTGAGTGGAACTTGTTCAGATCTGGGTGCCGATATTTTTTCAGAGGAAGAGATCAAGTATCTAGTTCATGATGTCTATGCTTCATATCTTATCGGTGACAAGCTATTGGGAATGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

214

Amino Acids

23.91

Weight (kDa)

6.9

Isoelectric Point (pI)

32.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015625)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11671 FvH4_6g07631 FvH4_6g07633
pyrus_communis	pycom12g19220
rosa_laevigata	RLG00000004863
rosa_roxburghii	Rroxscaffold_2G00142700 Rroxscaffold_3G00268420
rosa_rugosa	Rorug02G0084300
rosa_samantha	Rh2AG133300 Rh2BG136900 Rh2CG138400 Rh2DG138800 Rh3BG081600 Rh3CG082000 Rh7AG069500 Rh7DG078700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	548
AccB7I	CCANNNNNTGG	1 cut(s)	527
AciI	CCGC	2 cut(s)	83, 440
AcoI	YGGCCR	1 cut(s)	441
AcuI	CTGAAG	2 cut(s)	171, 473
AfaI	GTAC	1 cut(s)	450
AfiI	CCNNNNNNNGG	3 cut(s)	335, 386, 527
AgsI	TTSAA	4 cut(s)	47, 209, 255, 470
AhdI	GACNNNNNGTC	1 cut(s)	360
AluBI	AGCT	3 cut(s)	295, 392, 625
AluI	AGCT	3 cut(s)	295, 392, 625
Alw26I	GTCTC	1 cut(s)	168
AlwNI	CAGNNNCTG	1 cut(s)	19
AoxI	GGCC	1 cut(s)	441
ApeKI	GCWGC	1 cut(s)	481
Asp700I	GAANNNNTTC	1 cut(s)	535
AsuHPI	GGTGA	1 cut(s)	629
BanI	GGYRCC	1 cut(s)	548
BbsI	GAAGAC	2 cut(s)	93, 458
BbvI	GCAGC	1 cut(s)	468
BccI	CCATC	1 cut(s)	380
BclI	TGATCA	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	1 cut(s)	584
BglII	AGATCT	1 cut(s)	541
BisI	GCNGC	2 cut(s)	441, 482
BlsI	GCNGC	2 cut(s)	442, 483
BmeRI	GACNNNNNGTC	1 cut(s)	360
BmiI	GGNNCC	4 cut(s)	183, 273, 327, 550
BpiI	GAAGAC	2 cut(s)	93, 458
BsaAI	YACGTR	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	444
Bsc4I	CCNNNNNNNGG	3 cut(s)	335, 386, 527
Bse1I	ACTGG	2 cut(s)	13, 521
Bse3DI	GCAATG	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	444
BseGI	GGATG	1 cut(s)	225
BseLI	CCNNNNNNNGG	3 cut(s)	335, 386, 527
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	446
BseNI	ACTGG	2 cut(s)	13, 521
BseXI	GCAGC	1 cut(s)	468
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	443
BshNI	GGYRCC	1 cut(s)	548
BsiEI	CGRYCG	1 cut(s)	94
BslI	CCNNNNNNNGG	3 cut(s)	335, 386, 527
BsmAI	GTCTC	1 cut(s)	168
BsmI	GAATGC	1 cut(s)	639
BsnI	GGCC	1 cut(s)	443
Bsp143I	GATC	6 cut(s)	91, 222, 304, 358, 541, 573
Bsp19I	CCATGG	1 cut(s)	444
BspACI	CCGC	2 cut(s)	83, 440
BspANI	GGCC	1 cut(s)	443
BspCNI	CTCAG	1 cut(s)	445
BspHI	TCATGA	1 cut(s)	589
BspLI	GGNNCC	4 cut(s)	183, 273, 327, 550
BspT107I	GGYRCC	1 cut(s)	548
BsrDI	GCAATG	1 cut(s)	214
BsrI	ACTGG	2 cut(s)	13, 521
BssECI	CCNNGG	1 cut(s)	444
BssMI	GATC	6 cut(s)	91, 222, 304, 358, 541, 573
BssT1I	CCWWGG	1 cut(s)	444
Bst4CI	ACNGT	2 cut(s)	371, 418
Bst6I	CTCTTC	1 cut(s)	564
BstBAI	YACGTR	1 cut(s)	116
BstDEI	CTNAG	1 cut(s)	432
BstDSI	CCRYGG	1 cut(s)	444
BstF5I	GGATG	1 cut(s)	225
BstKTI	GATC	6 cut(s)	94, 225, 307, 361, 544, 576
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	6 cut(s)	91, 222, 304, 358, 541, 573
BstMCI	CGRYCG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	468
BstV2I	GAAGAC	2 cut(s)	93, 458
BstX2I	RGATCY	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	541
BsuRI	GGCC	1 cut(s)	443
BtgI	CCRYGG	1 cut(s)	444
BtsCI	GGATG	1 cut(s)	225
BtsIMutI	CAGTG	3 cut(s)	195, 376, 528
CaiI	CAGNNNCTG	1 cut(s)	19
CciI	TCATGA	1 cut(s)	589
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	449
CviAII	CATG	4 cut(s)	53, 445, 485, 590
CviJI	RGCY	8 cut(s)	247, 295, 326, 392, 443, 481, 520, 625
CviKI_1	RGCY	8 cut(s)	247, 295, 326, 392, 443, 481, 520, 625
CviQI	GTAC	1 cut(s)	449
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	6 cut(s)	93, 224, 306, 360, 543, 575
DpnII	GATC	6 cut(s)	91, 222, 304, 358, 541, 573
DriI	GACNNNNNGTC	1 cut(s)	360
EaeI	YGGCCR	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	564
Eam1105I	GACNNNNNGTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	564
EciI	GGCGGA	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	444
Eco32I	GATATC	1 cut(s)	514
Eco57I	CTGAAG	2 cut(s)	171, 473
EcoRV	GATATC	1 cut(s)	514
EcoT14I	CCWWGG	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	4 cut(s)	56, 448, 488, 593
FatI	CATG	4 cut(s)	52, 444, 484, 589
FbaI	TGATCA	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	441, 482
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	2 cut(s)	441, 482
FspBI	CTAG	1 cut(s)	584
GluI	GCNGC	2 cut(s)	441, 482
HaeIII	GGCC	1 cut(s)	443
HgaI	GACGC	1 cut(s)	20
Hin1II	CATG	4 cut(s)	56, 448, 488, 593
HinfI	GANTC	1 cut(s)	463
HphI	GGTGA	1 cut(s)	629
Hpy188I	TCNGA	5 cut(s)	304, 309, 506, 541, 565
Hpy188III	TCNNGA	3 cut(s)	275, 495, 590
HpyAV	CCTTC	3 cut(s)	195, 203, 333
HpyCH4III	ACNGT	2 cut(s)	371, 418
HpyCH4IV	ACGT	2 cut(s)	115, 128
HpyCH4V	TGCA	2 cut(s)	41, 484
HpyF3I	CTNAG	1 cut(s)	432
HpySE526I	ACGT	2 cut(s)	115, 128
Hsp92II	CATG	4 cut(s)	56, 448, 488, 593
Ksp22I	TGATCA	1 cut(s)	222
Kzo9I	GATC	6 cut(s)	91, 222, 304, 358, 541, 573
LmnI	GCTCC	3 cut(s)	300, 331, 389
LpnPI	CCDG	7 cut(s)	26, 233, 254, 288, 480, 530, 534
Lsp1109I	GCAGC	1 cut(s)	468
MaeI	CTAG	1 cut(s)	584
MaeII	ACGT	2 cut(s)	115, 128
MaeIII	GTNAC	2 cut(s)	396, 617
MalI	GATC	6 cut(s)	93, 224, 306, 360, 543, 575
MboI	GATC	6 cut(s)	91, 222, 304, 358, 541, 573
MboII	GAAGA	4 cut(s)	98, 458, 466, 581
MflI	RGATCY	1 cut(s)	541
MluCI	AATT	1 cut(s)	119
MlyI	GAGTC	1 cut(s)	472
MnlI	CCTC	2 cut(s)	441, 559
MroXI	GAANNNNTTC	1 cut(s)	535
MseI	TTAA	4 cut(s)	122, 162, 344, 640
MslI	CAYNNNNRTG	1 cut(s)	230
Mva1269I	GAATGC	1 cut(s)	639
NcoI	CCATGG	1 cut(s)	444
NdeII	GATC	6 cut(s)	91, 222, 304, 358, 541, 573
NlaIII	CATG	4 cut(s)	56, 448, 488, 593
NlaIV	GGNNCC	4 cut(s)	183, 273, 327, 550
NmuCI	GTSAC	2 cut(s)	396, 617
PagI	TCATGA	1 cut(s)	589
PctI	GAATGC	1 cut(s)	639
PdmI	GAANNNNTTC	1 cut(s)	535
PflMI	CCANNNNNTGG	1 cut(s)	527
PkrI	GCNGC	2 cut(s)	442, 483
Ple19I	CGATCG	1 cut(s)	94
PleI	GAGTC	1 cut(s)	471
PpsI	GAGTC	1 cut(s)	471
Ppu21I	YACGTR	1 cut(s)	116
PspN4I	GGNNCC	4 cut(s)	183, 273, 327, 550
PstNI	CAGNNNCTG	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	541
PvuI	CGATCG	1 cut(s)	94
RsaI	GTAC	1 cut(s)	450
RsaNI	GTAC	1 cut(s)	449
RseI	CAYNNNNRTG	1 cut(s)	230
SaqAI	TTAA	4 cut(s)	122, 162, 344, 640
SatI	GCNGC	2 cut(s)	441, 482
Sau3AI	GATC	6 cut(s)	91, 222, 304, 358, 541, 573
SchI	GAGTC	1 cut(s)	472
SmiMI	CAYNNNNRTG	1 cut(s)	230
Sse9I	AATT	1 cut(s)	119
SsiI	CCGC	2 cut(s)	83, 440
SspMI	CTAG	1 cut(s)	584
StyI	CCWWGG	1 cut(s)	444
TaaI	ACNGT	2 cut(s)	371, 418
TaiI	ACGT	2 cut(s)	118, 131
TasI	AATT	1 cut(s)	119
TauI	GCSGC	1 cut(s)	443
Tru1I	TTAA	4 cut(s)	122, 162, 344, 640
Tru9I	TTAA	4 cut(s)	122, 162, 344, 640
TscAI	CASTG	3 cut(s)	195, 376, 528
TseFI	GTSAC	2 cut(s)	396, 617
TseI	GCWGC	1 cut(s)	481
Tsp45I	GTSAC	2 cut(s)	396, 617
TspDTI	ATGAA	3 cut(s)	41, 578, 594
TspRI	CASTG	3 cut(s)	195, 376, 528
Van91I	CCANNNNNTGG	1 cut(s)	527
XmnI	GAANNNNTTC	1 cut(s)	535
XspI	CTAG	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.