Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015625

Physical Location & Seq

Genomic Coordinates Forward (+)

4582897 .. 4583915

Gene Structure 1019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07631.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGATCCCTACCTATTTCCTGTCAAAGTTGCGTCCGTACGAAGTTCAAGTTCATGGTGTCAAAGTGAAGGCAACTGTGGTGGCCAATAATGTTAGCTTCCTTGAGCAAAAGCTCTCTGAATTAAGTAGCAAGCGCGTTGTGGGAGTTGATGTGAAGTTTCAAAGCAGAGTGGCCTCATTGTTGCTGCTCTGCGTTGAGGGTCATTGCTTGATCATCCCAATTCGTGCACCTTTCTCTACTGTGTTTAACCCAAAAAAAGTTTCTGATTCTGGACTCGGACGGCTTCTTGCTGACCAGAATATTTGTTTTGTGTACTCGAAATTTAAGAGCGAAGATGCTACCTCCTATGCAGGATTGCCGGAAATGATGAAGCAGACAGGTATAGAAGTGGATCATCTGGCGGCTACCATATTGAAGAAACCGACTCTCCTCAGAAAAGGGCTCTATGAGTTGGGACGTGAAGTTGGTATTGACATCAAATCAGCTTATTATGTACAATACATAAATTGGTCGGATGTCAAAGTTTTCTCAGAGGAAGAGATCAAGTATGCAATTCACGATGTCTATGCTACATTCCTTATTGGGAACAAACTTTTGGGGACGCTTGCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

205

Amino Acids

22.78

Weight (kDa)

8.99

Isoelectric Point (pI)

30.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015625)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11671 FvH4_6g07631 FvH4_6g07633
pyrus_communis	pycom12g19220
rosa_laevigata	RLG00000004863
rosa_roxburghii	Rroxscaffold_2G00142700 Rroxscaffold_3G00268420
rosa_rugosa	Rorug02G0084300
rosa_samantha	Rh2AG133300 Rh2BG136900 Rh2CG138400 Rh2DG138800 Rh3BG081600 Rh3CG082000 Rh7AG069500 Rh7DG078700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	135
AciI	CCGC	1 cut(s)	401
AclWI	GGATC	1 cut(s)	399
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	320
AfaI	GTAC	3 cut(s)	38, 314, 495
AgsI	TTSAA	3 cut(s)	47, 161, 415
AjiI	CACGTC	1 cut(s)	458
AjuI	GAANNNNNNNTTGG	4 cut(s)	244, 276, 578, 610
AluBI	AGCT	3 cut(s)	96, 112, 485
AluI	AGCT	3 cut(s)	96, 112, 485
Alw21I	GWGCWC	1 cut(s)	229
Alw44I	GTGCAC	1 cut(s)	225
AlwI	GGATC	1 cut(s)	399
AoxI	GGCC	2 cut(s)	81, 171
ApaLI	GTGCAC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	184
ApoI	RAATTY	1 cut(s)	320
AspLEI	GCGC	1 cut(s)	135
BaeGI	GKGCMC	1 cut(s)	229
BalI	TGGCCA	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	171
BceAI	ACGGC	1 cut(s)	296
BcgI	CGANNNNNNTGC	2 cut(s)	548, 582
BclI	TGATCA	1 cut(s)	210
BisI	GCNGC	2 cut(s)	185, 402
BlsI	GCNGC	2 cut(s)	186, 403
BmgBI	CACGTC	1 cut(s)	458
BmsI	GCATC	1 cut(s)	325
BpuEI	CTTGAG	1 cut(s)	122
BsaXI	ACNNNNNCTCC	4 cut(s)	135, 165, 411, 441
Bse3DI	GCAATG	1 cut(s)	202
BseGI	GGATG	2 cut(s)	213, 520
BseMI	GCAATG	1 cut(s)	202
BseMII	CTCAG	2 cut(s)	445, 543
BseRI	GAGGAG	1 cut(s)	419
BseSI	GKGCMC	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	171
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	2 cut(s)	83, 173
BsiHKAI	GWGCWC	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	359
BsiWI	CGTACG	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	468
BsmFI	GGGAC	1 cut(s)	468
BsnI	GGCC	2 cut(s)	83, 173
Bsp1286I	GDGCHC	2 cut(s)	229, 444
Bsp1407I	TGTACA	1 cut(s)	493
Bsp143I	GATC	4 cut(s)	3, 210, 391, 540
BspACI	CCGC	1 cut(s)	401
BspANI	GGCC	2 cut(s)	83, 173
BspCNI	CTCAG	2 cut(s)	444, 542
BspFNI	CGCG	1 cut(s)	135
BspPI	GGATC	1 cut(s)	399
BsrDI	GCAATG	1 cut(s)	202
BsrGI	TGTACA	1 cut(s)	493
BssMI	GATC	4 cut(s)	3, 210, 391, 540
Bst4CI	ACNGT	2 cut(s)	76, 241
Bst6I	CTCTTC	1 cut(s)	531
BstAUI	TGTACA	1 cut(s)	493
BstC8I	GCNNGC	2 cut(s)	131, 606
BstDEI	CTNAG	2 cut(s)	431, 529
BstF5I	GGATG	2 cut(s)	213, 520
BstFNI	CGCG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	4 cut(s)	6, 213, 394, 543
BstMBI	GATC	4 cut(s)	3, 210, 391, 540
BstSLI	GKGCMC	1 cut(s)	229
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	83, 173
BtrI	CACGTC	1 cut(s)	458
BtsCI	GGATG	2 cut(s)	213, 520
Cac8I	GCNNGC	2 cut(s)	131, 606
CfoI	GCGC	1 cut(s)	135
CseI	GACGC	2 cut(s)	20, 610
Csp6I	GTAC	3 cut(s)	37, 313, 494
CspCI	CAANNNNNGTGG	2 cut(s)	60, 95
CviAII	CATG	1 cut(s)	53
CviJI	RGCY	8 cut(s)	83, 96, 112, 173, 283, 404, 442, 485
CviKI_1	RGCY	8 cut(s)	83, 96, 112, 173, 283, 404, 442, 485
CviQI	GTAC	3 cut(s)	37, 313, 494
DdeI	CTNAG	2 cut(s)	431, 529
DpnI	GATC	4 cut(s)	5, 212, 393, 542
DpnII	GATC	4 cut(s)	3, 210, 391, 540
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Eco24I	GRGCYC	1 cut(s)	444
EcoT38I	GRGCYC	1 cut(s)	444
FaeI	CATG	1 cut(s)	56
FaiI	YATR	9 cut(s)	54, 348, 383, 410, 447, 492, 503, 549, 567
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	1 cut(s)	52
FbaI	TGATCA	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	185, 402
FokI	GGATG	2 cut(s)	200, 527
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	2 cut(s)	185, 402
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	2 cut(s)	185, 402
HaeIII	GGCC	2 cut(s)	83, 173
HapII	CCGG	1 cut(s)	359
HgaI	GACGC	2 cut(s)	20, 610
HhaI	GCGC	1 cut(s)	135
Hin1II	CATG	1 cut(s)	56
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HinfI	GANTC	3 cut(s)	266, 273, 424
HpaII	CCGG	1 cut(s)	359
Hpy166II	GTNNAC	2 cut(s)	227, 313
Hpy188I	TCNGA	6 cut(s)	118, 265, 278, 434, 514, 532
Hpy188III	TCNNGA	3 cut(s)	270, 557, 612
Hpy8I	GTNNAC	2 cut(s)	227, 313
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	2 cut(s)	76, 241
HpyCH4IV	ACGT	1 cut(s)	457
HpyCH4V	TGCA	4 cut(s)	227, 350, 551, 608
HpyF3I	CTNAG	2 cut(s)	431, 529
HpySE526I	ACGT	1 cut(s)	457
Hsp92II	CATG	1 cut(s)	56
HspAI	GCGC	1 cut(s)	133
Ksp22I	TGATCA	1 cut(s)	210
Kzo9I	GATC	4 cut(s)	3, 210, 391, 540
LpnPI	CCDG	7 cut(s)	32, 255, 308, 336, 363, 372, 383
Lsp1109I	GCAGC	1 cut(s)	171
LweI	GCATC	1 cut(s)	325
MaeII	ACGT	1 cut(s)	457
MalI	GATC	4 cut(s)	5, 212, 393, 542
MboI	GATC	4 cut(s)	3, 210, 391, 540
MboII	GAAGA	3 cut(s)	344, 427, 548
MhlI	GDGCHC	2 cut(s)	229, 444
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	5 cut(s)	119, 219, 320, 505, 552
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	2 cut(s)	267, 418
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	5 cut(s)	184, 190, 352, 440, 526
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	3 cut(s)	122, 246, 324
Msp20I	TGGCCA	1 cut(s)	83
MspI	CCGG	1 cut(s)	359
MvnI	CGCG	1 cut(s)	135
NdeII	GATC	4 cut(s)	3, 210, 391, 540
NlaIII	CATG	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	266
Pfl23II	CGTACG	1 cut(s)	36
PkrI	GCNGC	2 cut(s)	186, 403
PleI	GAGTC	2 cut(s)	267, 418
PpsI	GAGTC	2 cut(s)	267, 418
PspLI	CGTACG	1 cut(s)	36
RsaI	GTAC	3 cut(s)	38, 314, 495
RsaNI	GTAC	3 cut(s)	37, 313, 494
SaqAI	TTAA	3 cut(s)	122, 246, 324
SatI	GCNGC	2 cut(s)	185, 402
Sau3AI	GATC	4 cut(s)	3, 210, 391, 540
SchI	GAGTC	2 cut(s)	267, 418
SduI	GDGCHC	2 cut(s)	229, 444
SetI	ASST	8 cut(s)	14, 98, 114, 232, 344, 382, 460, 487
SfaNI	GCATC	1 cut(s)	325
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	5 cut(s)	119, 219, 320, 505, 552
SsiI	CCGC	1 cut(s)	401
SspI	AATATT	1 cut(s)	301
TaaI	ACNGT	2 cut(s)	76, 241
TaiI	ACGT	1 cut(s)	460
TaqI	TCGA	1 cut(s)	317
TasI	AATT	5 cut(s)	119, 219, 320, 505, 552
TatI	WGTACW	2 cut(s)	312, 493
TauI	GCSGC	1 cut(s)	404
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	3 cut(s)	122, 246, 324
Tru9I	TTAA	3 cut(s)	122, 246, 324
TseI	GCWGC	1 cut(s)	184
TspDTI	ATGAA	2 cut(s)	41, 383
TspGWI	ACGGA	1 cut(s)	24
VneI	GTGCAC	1 cut(s)	225
XapI	RAATTY	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.