Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0015625

Physical Location & Seq

Genomic Coordinates Reverse (-)

80792780 .. 80799398

Gene Structure 6619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00142700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGTGCGTGGATTTCCTAAAAGAAACTTATCAAAACTTAAGAGCTTGCGTGGCCGTGGTGTTATCACTGTTATGGGACTAGACTTCAAGATTAGCTCTAGCGCTAGAGCTAGCTCTGTCAAGCAGTTGCTTCTCTGTGCTGGAAATTGCTGCTTGATCATCCCAAAAAGTCTTAAGTATCACCAACAAGTGCAACAACTTCTCTCTGACAACACTATCTGCTCTGTGGGTAAGGGAATGACATCGAAACTTCATTCTTATCAGCAGTATCTGCTTGACCATAGATGTAAGACAGGTGTTGACATTGGTCATTTGGCTACTAGGGTTCTGAAGAAAGTCAAGAAACCGATATTGGAGAAGAGCTGCCTGGTGGAGTTGGCGGGTGAAGTTGGCATGGCTATCGAGCCACTAGCAACGTTAGGGGGAAGTGGATCGTCGACTTCTCAGGAACCGAACTGGGATGCCATAGTTTTCTCAGATGAGGAGATCAAGTATGCAATTTATGATGTCTATACTTCTTATGTTATTGGTAACAAGCTCTTGGGGTTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

184

Amino Acids

20.13

Weight (kDa)

9.39

Isoelectric Point (pI)

27.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015625)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11671 FvH4_6g07631 FvH4_6g07633
pyrus_communis	pycom12g19220
rosa_laevigata	RLG00000004863
rosa_roxburghii	Rroxscaffold_2G00142700 Rroxscaffold_3G00268420
rosa_rugosa	Rorug02G0084300
rosa_samantha	Rh2AG133300 Rh2BG136900 Rh2CG138400 Rh2DG138800 Rh3BG081600 Rh3CG082000 Rh7AG069500 Rh7DG078700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	437
AciI	CCGC	1 cut(s)	380
AclI	AACGTT	1 cut(s)	416
AclWI	GGATC	1 cut(s)	439
AcoI	YGGCCR	1 cut(s)	52
AcuI	CTGAAG	1 cut(s)	350
AfeI	AGCGCT	1 cut(s)	103
AflII	CTTAAG	2 cut(s)	38, 173
AgsI	TTSAA	1 cut(s)	88
AjnI	CCWGG	1 cut(s)	366
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AluBI	AGCT	6 cut(s)	45, 96, 110, 114, 363, 538
AluI	AGCT	6 cut(s)	45, 96, 110, 114, 363, 538
AlwI	GGATC	1 cut(s)	439
AlwNI	CAGNNNCTG	1 cut(s)	271
Aor51HI	AGCGCT	1 cut(s)	103
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	2 cut(s)	150, 363
AspLEI	GCGC	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	173, 395
AsuNHI	GCTAGC	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	137, 350
BceAI	ACGGC	1 cut(s)	39
BcgI	CGANNNNNNTGC	2 cut(s)	382, 416
BciT130I	CCWGG	1 cut(s)	368
BclI	TGATCA	1 cut(s)	156
BfaI	CTAG	6 cut(s)	80, 99, 105, 111, 321, 410
BfoI	RGCGCY	1 cut(s)	105
BfrI	CTTAAG	2 cut(s)	38, 173
BisI	GCNGC	2 cut(s)	151, 364
BlsI	GCNGC	2 cut(s)	152, 365
Bme1390I	CCNGG	1 cut(s)	368
BmiI	GGNNCC	1 cut(s)	450
BmrFI	CCNGG	1 cut(s)	368
BmrI	ACTGGG	1 cut(s)	466
BmsI	GCATC	1 cut(s)	451
BmtI	GCTAGC	1 cut(s)	114
BmuI	ACTGGG	1 cut(s)	466
BoxI	GACNNNNGTC	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	55
BsaXI	ACNNNNNCTCC	2 cut(s)	476, 506
Bse1I	ACTGG	1 cut(s)	461
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	55
BseGI	GGATG	2 cut(s)	159, 466
BseMII	CTCAG	2 cut(s)	458, 489
BseNI	ACTGG	1 cut(s)	461
BseRI	GAGGAG	1 cut(s)	497
BseXI	GCAGC	2 cut(s)	137, 350
BshFI	GGCC	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	54
Bsp143I	GATC	3 cut(s)	156, 431, 486
BspACI	CCGC	1 cut(s)	380
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	2 cut(s)	457, 488
BspLI	GGNNCC	1 cut(s)	450
BspOI	GCTAGC	1 cut(s)	114
BspPI	GGATC	1 cut(s)	439
BspQI	GCTCTTC	1 cut(s)	353
BspTI	CTTAAG	2 cut(s)	38, 173
BsrI	ACTGG	1 cut(s)	461
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	3 cut(s)	156, 431, 486
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	1 cut(s)	70
Bst6I	CTCTTC	1 cut(s)	353
BstAFI	CTTAAG	2 cut(s)	38, 173
BstAPI	GCANNNNNTGC	1 cut(s)	271
BstC8I	GCNNGC	2 cut(s)	47, 112
BstDEI	CTNAG	2 cut(s)	444, 475
BstDSI	CCRYGG	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	159, 466
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	3 cut(s)	159, 434, 489
BstMBI	GATC	3 cut(s)	156, 431, 486
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 271
BstNI	CCWGG	1 cut(s)	368
BstPAI	GACNNNNGTC	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	366
BstV1I	GCAGC	2 cut(s)	137, 350
BsuRI	GGCC	1 cut(s)	54
BtgI	CCRYGG	1 cut(s)	55
BtsCI	GGATG	2 cut(s)	159, 466
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	2 cut(s)	47, 112
CaiI	CAGNNNCTG	1 cut(s)	271
CfoI	GCGC	1 cut(s)	104
CviAII	CATG	1 cut(s)	394
DdeI	CTNAG	2 cut(s)	444, 475
DpnI	GATC	3 cut(s)	158, 433, 488
DpnII	GATC	3 cut(s)	156, 431, 486
EaeI	YGGCCR	1 cut(s)	52
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
Eco47III	AGCGCT	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	366
FaeI	CATG	1 cut(s)	397
FaiI	YATR	8 cut(s)	74, 282, 395, 467, 495, 504, 513, 522
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	1 cut(s)	393
FauI	CCCGC	1 cut(s)	373
FbaI	TGATCA	1 cut(s)	156
FblI	GTMKAC	1 cut(s)	437
Fnu4HI	GCNGC	2 cut(s)	151, 364
FokI	GGATG	2 cut(s)	146, 473
Fsp4HI	GCNGC	2 cut(s)	151, 364
FspBI	CTAG	6 cut(s)	80, 99, 105, 111, 321, 410
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	2 cut(s)	151, 364
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	1 cut(s)	54
HhaI	GCGC	1 cut(s)	104
Hin1II	CATG	1 cut(s)	397
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HincII	GTYRAC	2 cut(s)	301, 438
HindII	GTYRAC	2 cut(s)	301, 438
HphI	GGTGA	2 cut(s)	173, 395
Hpy166II	GTNNAC	2 cut(s)	301, 438
Hpy188I	TCNGA	3 cut(s)	208, 330, 478
Hpy188III	TCNNGA	3 cut(s)	88, 340, 446
Hpy8I	GTNNAC	2 cut(s)	301, 438
Hpy99I	CGWCG	1 cut(s)	439
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	416
HpyCH4V	TGCA	2 cut(s)	193, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 271
HpyF3I	CTNAG	2 cut(s)	444, 475
HpySE526I	ACGT	1 cut(s)	416
Hsp92II	CATG	1 cut(s)	397
HspAI	GCGC	1 cut(s)	102
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	3 cut(s)	156, 431, 486
LguI	GCTCTTC	1 cut(s)	353
LpnPI	CCDG	6 cut(s)	126, 279, 353, 380, 431, 442
Lsp1109I	GCAGC	2 cut(s)	137, 350
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	6 cut(s)	80, 99, 105, 111, 321, 410
MaeII	ACGT	1 cut(s)	416
MaeIII	GTNAC	1 cut(s)	530
MalI	GATC	3 cut(s)	158, 433, 488
MboI	GATC	3 cut(s)	156, 431, 486
MboII	GAAGA	2 cut(s)	343, 370
MluCI	AATT	2 cut(s)	145, 498
MnlI	CCTC	1 cut(s)	475
MseI	TTAA	3 cut(s)	39, 174, 553
MslI	CAYNNNNRTG	1 cut(s)	71
MspCI	CTTAAG	2 cut(s)	38, 173
MspR9I	CCNGG	1 cut(s)	368
MvaI	CCWGG	1 cut(s)	368
MwoI	GCNNNNNNNGC	2 cut(s)	51, 271
NdeII	GATC	3 cut(s)	156, 431, 486
NheI	GCTAGC	1 cut(s)	110
NlaIII	CATG	1 cut(s)	397
NlaIV	GGNNCC	1 cut(s)	450
PciSI	GCTCTTC	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	152, 365
PshAI	GACNNNNGTC	1 cut(s)	306
Psp1406I	AACGTT	1 cut(s)	416
Psp6I	CCWGG	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	1 cut(s)	450
PstNI	CAGNNNCTG	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	71
SalI	GTCGAC	1 cut(s)	436
SapI	GCTCTTC	1 cut(s)	353
SaqAI	TTAA	3 cut(s)	39, 174, 553
SatI	GCNGC	2 cut(s)	151, 364
Sau3AI	GATC	3 cut(s)	156, 431, 486
ScrFI	CCNGG	1 cut(s)	368
SetI	ASST	8 cut(s)	47, 98, 112, 116, 298, 365, 419, 540
SfaNI	GCATC	1 cut(s)	451
SmiMI	CAYNNNNRTG	1 cut(s)	71
SmlI	CTYRAG	2 cut(s)	38, 173
SmoI	CTYRAG	2 cut(s)	38, 173
Sse9I	AATT	2 cut(s)	145, 498
SsiI	CCGC	1 cut(s)	380
SspMI	CTAG	6 cut(s)	80, 99, 105, 111, 321, 410
StyD4I	CCNGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	1 cut(s)	419
TaqI	TCGA	3 cut(s)	245, 402, 437
TasI	AATT	2 cut(s)	145, 498
Tru1I	TTAA	3 cut(s)	39, 174, 553
Tru9I	TTAA	3 cut(s)	39, 174, 553
TscAI	CASTG	1 cut(s)	73
TseI	GCWGC	2 cut(s)	150, 363
TspDTI	ATGAA	1 cut(s)	242
TspRI	CASTG	1 cut(s)	73
Vha464I	CTTAAG	2 cut(s)	38, 173
XmiI	GTMKAC	1 cut(s)	437
XspI	CTAG	6 cut(s)	80, 99, 105, 111, 321, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.