Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0014743

Physical Location & Seq

Genomic Coordinates Forward (+)

9008746 .. 9010851

Gene Structure 2106 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCTAACCGCACCACCCACCGGCGCATTTTAGCAACACCACAACCAGAACCAGAACCACCAAGGCTGCGGCAGACCAAACCCTCCACTCCTTTAGATCCCACCAAACCCTGTTCAAGGCTAAACCCAAGTCACAAAACCCATACAACACAAAGACCCAGCAGCCAAAATCCACTCCCAACTGTTATGCACACCACCAGTGTTGAAAAACAGAGTAAAGAGAAGCTGCCCAAGAAGCCCAATAGAGAAGTGAAAGCTGAGGAGGTGGTGGTGAAGATGGAACTGATGGGTCTCAAAGAAGAAAAGCAGGAAGATGAGTATGAAAGTAGGAGACTTTCTACTTCTTCTTCTTCTTCAAAGTCTTTGGGAGGAAGAGGAAGGAGGAGTTCCTTTAGTGGGCCACCACAGGCTGAGATGAATAGGTTGGCAGATGTGTTTGCAAGCAATGGTGTCAAAGTGGTTTCAGTTGATATGCCTCCATTTATGCAGATCCATGCTGTGGAATGTGCAAGGAAAACTTGTGATAGCTTAGAAAAATTCACCTCCAAGACTCTAGCTTTGACTCTGAAAAAGGAATTTGATGGGGTATATGGACCAGCTTGGCACTGCATTGTAGGAACAAGTTTTGGGTCCTTTGTGACACACTCAGTAAGTGGCTTTATGTATTTCTCAATGGATCAAAAGTTGTACATCCTCTTGTTTAAGACCACAGTACAAAGAGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008092 GO:0008150 GO:0009987 GO:0010970 GO:0015630 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

243

Amino Acids

27.15

Weight (kDa)

9.65

Isoelectric Point (pI)

55.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	151 - 236	2e-27	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014743)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15920 FvH4_5g15920 FvH4_5g15920
malus_domestica	MD06G1184500.v1.1 MD14G1190400.v1.1
prunus_persica	Prupe.5G183300_v2.0.a1 Prupe.5G183300_v2.0.a1
pyrus_communis	pycom06g16370 pycom14g15810
rosa_chinensis	RchiOBHm_Chr1g0349921 RchiOBHm_Chr7g0180131
rosa_laevigata	RLG00000005290
rosa_roxburghii	Rroxscaffold_3G00273100
rosa_rugosa	Rorug06G0430700
rosa_samantha	Rh7BG031200 Rh7CG033100
rosa_wichuraiana	Rw7G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	499
AciI	CCGC	2 cut(s)	10, 70
AclWI	GGATC	3 cut(s)	92, 484, 684
AcsI	RAATTY	2 cut(s)	536, 575
AfaI	GTAC	2 cut(s)	689, 714
AfiI	CCNNNNNNNGG	4 cut(s)	21, 117, 396, 499
AgsI	TTSAA	3 cut(s)	117, 206, 357
AluBI	AGCT	5 cut(s)	226, 257, 528, 557, 599
AluI	AGCT	5 cut(s)	226, 257, 528, 557, 599
Alw26I	GTCTC	2 cut(s)	296, 325
AlwI	GGATC	3 cut(s)	92, 484, 684
AoxI	GGCC	1 cut(s)	398
ApeKI	GCWGC	3 cut(s)	67, 162, 226
ApoI	RAATTY	2 cut(s)	536, 575
ArsI	GACNNNNNNTTYG	2 cut(s)	541, 573
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	3 cut(s)	398, 593, 630
AsuHPI	GGTGA	2 cut(s)	283, 532
AvaII	GGWCC	2 cut(s)	593, 630
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	3 cut(s)	54, 174, 213
BccI	CCATC	3 cut(s)	271, 280, 575
BcoDI	GTCTC	2 cut(s)	296, 325
BfaI	CTAG	1 cut(s)	554
BisI	GCNGC	4 cut(s)	68, 71, 163, 227
BlsI	GCNGC	4 cut(s)	69, 72, 164, 228
Bme18I	GGWCC	2 cut(s)	593, 630
BmgT120I	GGNCC	3 cut(s)	398, 593, 630
BmiI	GGNNCC	1 cut(s)	631
Bpu10I	CCTNAGC	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	4 cut(s)	21, 117, 396, 499
Bse118I	RCCGGY	1 cut(s)	21
Bse1I	ACTGG	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	451
BseDI	CCNNGG	1 cut(s)	62
BseGI	GGATG	1 cut(s)	690
BseLI	CCNNNNNNNGG	4 cut(s)	21, 117, 396, 499
BseMI	GCAATG	1 cut(s)	451
BseMII	CTCAG	3 cut(s)	249, 402, 660
BseNI	ACTGG	1 cut(s)	198
BseRI	GAGGAG	2 cut(s)	275, 397
BseXI	GCAGC	3 cut(s)	54, 174, 213
BseYI	CCCAGC	1 cut(s)	158
BshFI	GGCC	1 cut(s)	400
BsiSI	CCGG	1 cut(s)	22
BslI	CCNNNNNNNGG	4 cut(s)	21, 117, 396, 499
BsmAI	GTCTC	2 cut(s)	296, 325
BsnI	GGCC	1 cut(s)	400
Bso31I	GGTCTC	1 cut(s)	296
Bsp1407I	TGTACA	1 cut(s)	687
Bsp143I	GATC	3 cut(s)	97, 489, 676
BspACI	CCGC	2 cut(s)	10, 70
BspANI	GGCC	1 cut(s)	400
BspCNI	CTCAG	3 cut(s)	250, 403, 659
BspLI	GGNNCC	1 cut(s)	631
BspPI	GGATC	3 cut(s)	92, 484, 684
BspTNI	GGTCTC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	451
BsrFI	RCCGGY	1 cut(s)	21
BsrGI	TGTACA	1 cut(s)	687
BsrI	ACTGG	1 cut(s)	198
BssAI	RCCGGY	1 cut(s)	21
BssECI	CCNNGG	1 cut(s)	62
BssMI	GATC	3 cut(s)	97, 489, 676
BssT1I	CCWWGG	1 cut(s)	62
Bst4CI	ACNGT	2 cut(s)	184, 712
Bst6I	CTCTTC	1 cut(s)	367
BstAUI	TGTACA	1 cut(s)	687
BstC8I	GCNNGC	1 cut(s)	442
BstDEI	CTNAG	4 cut(s)	258, 411, 529, 646
BstENI	CCTNNNNNAGG	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	690
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	3 cut(s)	100, 492, 679
BstMAI	GTCTC	2 cut(s)	296, 325
BstMBI	GATC	3 cut(s)	97, 489, 676
BstMWI	GCNNNNNNNGC	1 cut(s)	235
BstV1I	GCAGC	3 cut(s)	54, 174, 213
BstX2I	RGATCY	2 cut(s)	97, 489
BstYI	RGATCY	2 cut(s)	97, 489
BsuRI	GGCC	1 cut(s)	400
BtsCI	GGATG	1 cut(s)	690
BtsI	GCAGTG	1 cut(s)	604
BtsIMutI	CAGTG	2 cut(s)	205, 604
Cac8I	GCNNGC	1 cut(s)	442
CfoI	GCGC	1 cut(s)	27
Cfr10I	RCCGGY	1 cut(s)	21
Cfr13I	GGNCC	3 cut(s)	398, 593, 630
Csp6I	GTAC	2 cut(s)	688, 713
CspCI	CAANNNNNGTGG	2 cut(s)	184, 219
CviAII	CATG	1 cut(s)	494
CviQI	GTAC	2 cut(s)	688, 713
DdeI	CTNAG	4 cut(s)	258, 411, 529, 646
DpnI	GATC	3 cut(s)	99, 491, 678
DpnII	GATC	3 cut(s)	97, 489, 676
Eam1104I	CTCTTC	1 cut(s)	367
EarI	CTCTTC	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	62
Eco31I	GGTCTC	1 cut(s)	296
Eco47I	GGWCC	2 cut(s)	593, 630
EcoNI	CCTNNNNNAGG	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	630
EcoT14I	CCWWGG	1 cut(s)	62
ErhI	CCWWGG	1 cut(s)	62
FaeI	CATG	1 cut(s)	497
FaiI	YATR	9 cut(s)	144, 188, 321, 473, 485, 495, 589, 591, 662
FalI	AAGNNNNNCTT	2 cut(s)	502, 534
FatI	CATG	1 cut(s)	493
Fnu4HI	GCNGC	4 cut(s)	68, 71, 163, 227
FokI	GGATG	1 cut(s)	677
Fsp4HI	GCNGC	4 cut(s)	68, 71, 163, 227
FspBI	CTAG	1 cut(s)	554
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	4 cut(s)	68, 71, 163, 227
GsaI	CCCAGC	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	400
HapII	CCGG	1 cut(s)	22
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	1 cut(s)	497
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HinfI	GANTC	2 cut(s)	550, 562
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	2 cut(s)	283, 532
Hpy188I	TCNGA	1 cut(s)	567
HpyAV	CCTTC	1 cut(s)	372
HpyCH4III	ACNGT	2 cut(s)	184, 712
HpyCH4V	TGCA	5 cut(s)	190, 440, 487, 509, 609
HpyF10VI	GCNNNNNNNGC	1 cut(s)	235
HpyF3I	CTNAG	4 cut(s)	258, 411, 529, 646
Hsp92II	CATG	1 cut(s)	497
HspAI	GCGC	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	97, 489, 676
LpnPI	CCDG	9 cut(s)	35, 60, 66, 124, 172, 211, 293, 392, 609
Lsp1109I	GCAGC	3 cut(s)	54, 174, 213
MaeI	CTAG	1 cut(s)	554
MaeIII	GTNAC	2 cut(s)	131, 637
MalI	GATC	3 cut(s)	99, 491, 678
MboI	GATC	3 cut(s)	97, 489, 676
MboII	GAAGA	8 cut(s)	286, 311, 323, 336, 339, 342, 345, 384
MflI	RGATCY	2 cut(s)	97, 489
MluCI	AATT	2 cut(s)	536, 575
MlyI	GAGTC	2 cut(s)	544, 556
MnlI	CCTC	9 cut(s)	94, 253, 256, 362, 368, 375, 486, 553, 704
MseI	TTAA	1 cut(s)	702
MspI	CCGG	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	235
NdeII	GATC	3 cut(s)	97, 489, 676
NlaIII	CATG	1 cut(s)	497
NlaIV	GGNNCC	1 cut(s)	631
NmuCI	GTSAC	2 cut(s)	131, 637
PflMI	CCANNNNNTGG	1 cut(s)	499
PkrI	GCNGC	4 cut(s)	69, 72, 164, 228
PleI	GAGTC	2 cut(s)	544, 556
PpsI	GAGTC	2 cut(s)	544, 556
PpuMI	RGGWCCY	1 cut(s)	630
Psp5II	RGGWCCY	1 cut(s)	630
PspFI	CCCAGC	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	631
PspPI	GGNCC	3 cut(s)	398, 593, 630
PspPPI	RGGWCCY	1 cut(s)	630
PsuI	RGATCY	2 cut(s)	97, 489
RsaI	GTAC	2 cut(s)	689, 714
RsaNI	GTAC	2 cut(s)	688, 713
SaqAI	TTAA	1 cut(s)	702
SatI	GCNGC	4 cut(s)	68, 71, 163, 227
Sau3AI	GATC	3 cut(s)	97, 489, 676
Sau96I	GGNCC	3 cut(s)	398, 593, 630
SchI	GAGTC	2 cut(s)	544, 556
SetI	ASST	8 cut(s)	228, 259, 267, 425, 530, 545, 559, 601
SgrAI	CRCCGGYG	1 cut(s)	21
SinI	GGWCC	2 cut(s)	593, 630
Sse9I	AATT	2 cut(s)	536, 575
SsiI	CCGC	2 cut(s)	10, 70
SspMI	CTAG	1 cut(s)	554
StyI	CCWWGG	1 cut(s)	62
TaaI	ACNGT	2 cut(s)	184, 712
TasI	AATT	2 cut(s)	536, 575
TatI	WGTACW	2 cut(s)	687, 712
TauI	GCSGC	1 cut(s)	73
Tru1I	TTAA	1 cut(s)	702
Tru9I	TTAA	1 cut(s)	702
TscAI	CASTG	2 cut(s)	205, 611
TseFI	GTSAC	2 cut(s)	131, 637
TseI	GCWGC	3 cut(s)	67, 162, 226
Tsp45I	GTSAC	2 cut(s)	131, 637
TspDTI	ATGAA	2 cut(s)	336, 431
TspRI	CASTG	2 cut(s)	205, 611
Van91I	CCANNNNNTGG	1 cut(s)	499
VpaK11BI	GGWCC	2 cut(s)	593, 630
XagI	CCTNNNNNAGG	1 cut(s)	115
XapI	RAATTY	2 cut(s)	536, 575
XspI	CTAG	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.