Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014743

Physical Location & Seq

Genomic Coordinates Reverse (-)

2162142 .. 2163434

Gene Structure 1293 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16060

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTCTACTCACCCAAATCCCCAAAAACCAGTCATGGCTAACCGCACCACCCACCGGCGCATTCTAGCAACACCAGAGCCAGAACCAGAACCAGAACCACCAAGGCAGCAGACCAAACCCTCCACTCCTTTAGATCCCACCATGCCCTCTAAACCCTCTTCTAGGCTAAACCCAAATCACAGAATCCGTACAGCTCAAAGACCCAGTAGTCAAAACCCACTCCCAAGTTTTGTACACACCAACAATGTTGAGAAACAGAGTAAAGAGAAGCTGCCCAATAGAGAAGTGGATAAGAAGAAAGTTGAGGAGGTGGTGGTGAAGATGGAATTGATGGGTGTCAAAGAAGAAGAGCACGAAGAAAAAGAGTATGAACGTAGGAGACTTTCTACTTCTTCTTCTTCTTCAAATTCTTTGGGTGGAAGAAGGAAGTCCTTTTGTGGGTCAGGACAGGTTCAATTGAATAGGTTGGCTGATGTGTTTGCAAGCAATGGTGTGAAAGTGGTTTCAGTTGATATGCCTCCATTTATGCAGATCCATGCTGTGGAATGCGCAAGAAAGACTTGTGATAGCTTAGAAAAATTCACCTCCAAGACTCTAGCTTTGACTCTCAAAAAGGAATTTGATGGGGTATATGGACCAGCATGGCACTGCATTGTAGGAACAAGTTTTGGGTCTTTTGTGACACACTCAGTAAGTGGCTTTATGTATTTCTCAATGGATCAAAAGTTGTACATCCTCTTGTTTAAGACCACAGTACAAAGAGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008092 GO:0008150 GO:0009987 GO:0010970 GO:0015630 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

256

Amino Acids

28.9

Weight (kDa)

9.49

Isoelectric Point (pI)

54.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	165 - 250	2.2e-27	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0014743)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15920 FvH4_5g15920 FvH4_5g15920
malus_domestica	MD06G1184500.v1.1 MD14G1190400.v1.1
prunus_persica	Prupe.5G183300_v2.0.a1 Prupe.5G183300_v2.0.a1
pyrus_communis	pycom06g16370 pycom14g15810
rosa_chinensis	RchiOBHm_Chr1g0349921 RchiOBHm_Chr7g0180131
rosa_laevigata	RLG00000005290
rosa_roxburghii	Rroxscaffold_3G00273100
rosa_rugosa	Rorug06G0430700
rosa_samantha	Rh7BG031200 Rh7CG033100
rosa_wichuraiana	Rw7G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	207
Acc16I	TGCGCA	1 cut(s)	550
AccB7I	CCANNNNNTGG	1 cut(s)	541
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	3 cut(s)	128, 526, 726
AcsI	RAATTY	3 cut(s)	406, 578, 617
AfaI	GTAC	4 cut(s)	190, 234, 731, 756
AfiI	CCNNNNNNNGG	4 cut(s)	54, 162, 438, 541
AgsI	TTSAA	3 cut(s)	405, 455, 460
AluBI	AGCT	4 cut(s)	194, 271, 570, 599
AluI	AGCT	4 cut(s)	194, 271, 570, 599
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	1 cut(s)	373
AlwI	GGATC	3 cut(s)	128, 526, 726
ApeKI	GCWGC	2 cut(s)	106, 271
ApoI	RAATTY	3 cut(s)	406, 578, 617
ArsI	GACNNNNNNTTYG	2 cut(s)	583, 615
AspLEI	GCGC	2 cut(s)	60, 551
AspS9I	GGNCC	1 cut(s)	635
AsuHPI	GGTGA	2 cut(s)	328, 574
AvaII	GGWCC	1 cut(s)	635
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	2 cut(s)	118, 258
BccI	CCATC	3 cut(s)	316, 325, 617
BcoDI	GTCTC	1 cut(s)	373
BfaI	CTAG	3 cut(s)	65, 162, 596
BisI	GCNGC	2 cut(s)	107, 272
BlsI	GCNGC	2 cut(s)	108, 273
Bme18I	GGWCC	1 cut(s)	635
BmgT120I	GGNCC	1 cut(s)	635
BmrI	ACTGGG	1 cut(s)	198
BmuI	ACTGGG	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	4 cut(s)	54, 162, 438, 541
Bse118I	RCCGGY	1 cut(s)	54
Bse1I	ACTGG	2 cut(s)	29, 204
Bse3DI	GCAATG	1 cut(s)	493
BseDI	CCNNGG	1 cut(s)	101
BseGI	GGATG	1 cut(s)	732
BseLI	CCNNNNNNNGG	4 cut(s)	54, 162, 438, 541
BseMI	GCAATG	1 cut(s)	493
BseMII	CTCAG	1 cut(s)	702
BseNI	ACTGG	2 cut(s)	29, 204
BseRI	GAGGAG	1 cut(s)	320
BseXI	GCAGC	2 cut(s)	118, 258
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	1 cut(s)	55
BslI	CCNNNNNNNGG	4 cut(s)	54, 162, 438, 541
BsmAI	GTCTC	1 cut(s)	373
BsmI	GAATGC	2 cut(s)	60, 551
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp1407I	TGTACA	2 cut(s)	232, 729
Bsp143I	GATC	3 cut(s)	133, 531, 718
BspACI	CCGC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	701
BspPI	GGATC	3 cut(s)	128, 526, 726
BspQI	GCTCTTC	1 cut(s)	342
BsrDI	GCAATG	1 cut(s)	493
BsrFI	RCCGGY	1 cut(s)	54
BsrGI	TGTACA	2 cut(s)	232, 729
BsrI	ACTGG	2 cut(s)	29, 204
BssAI	RCCGGY	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	101
BssMI	GATC	3 cut(s)	133, 531, 718
BssT1I	CCWWGG	1 cut(s)	101
Bst4CI	ACNGT	1 cut(s)	754
Bst6I	CTCTTC	2 cut(s)	163, 342
BstAUI	TGTACA	2 cut(s)	232, 729
BstC8I	GCNNGC	1 cut(s)	484
BstDEI	CTNAG	2 cut(s)	571, 688
BstENI	CCTNNNNNAGG	1 cut(s)	160
BstF5I	GGATG	1 cut(s)	732
BstHHI	GCGC	2 cut(s)	60, 551
BstKTI	GATC	3 cut(s)	136, 534, 721
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	3 cut(s)	133, 531, 718
BstV1I	GCAGC	2 cut(s)	118, 258
BstX2I	RGATCY	2 cut(s)	133, 531
BstYI	RGATCY	2 cut(s)	133, 531
BtsCI	GGATG	1 cut(s)	732
BtsI	GCAGTG	1 cut(s)	646
BtsIMutI	CAGTG	1 cut(s)	646
Cac8I	GCNNGC	1 cut(s)	484
CfoI	GCGC	2 cut(s)	60, 551
Cfr10I	RCCGGY	1 cut(s)	54
Cfr13I	GGNCC	1 cut(s)	635
Csp6I	GTAC	4 cut(s)	189, 233, 730, 755
CviAII	CATG	4 cut(s)	34, 142, 536, 642
CviJI	RGCY	9 cut(s)	38, 79, 166, 194, 271, 470, 570, 599, 699
CviKI_1	RGCY	9 cut(s)	38, 79, 166, 194, 271, 470, 570, 599, 699
CviQI	GTAC	4 cut(s)	189, 233, 730, 755
DdeI	CTNAG	2 cut(s)	571, 688
DpnI	GATC	3 cut(s)	135, 533, 720
DpnII	GATC	3 cut(s)	133, 531, 718
DrdI	GACNNNNNNGTC	1 cut(s)	207
DseDI	GACNNNNNNGTC	1 cut(s)	207
Eam1104I	CTCTTC	2 cut(s)	163, 342
EarI	CTCTTC	2 cut(s)	163, 342
Eco130I	CCWWGG	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	635
EcoNI	CCTNNNNNAGG	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	101
ErhI	CCWWGG	1 cut(s)	101
FaeI	CATG	4 cut(s)	37, 145, 539, 645
FalI	AAGNNNNNCTT	2 cut(s)	544, 576
FatI	CATG	4 cut(s)	33, 141, 535, 641
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	107, 272
FokI	GGATG	1 cut(s)	719
Fsp4HI	GCNGC	2 cut(s)	107, 272
FspBI	CTAG	3 cut(s)	65, 162, 596
FspI	TGCGCA	1 cut(s)	550
GlaI	GCGC	2 cut(s)	59, 550
GluI	GCNGC	2 cut(s)	107, 272
HapII	CCGG	1 cut(s)	55
HhaI	GCGC	2 cut(s)	60, 551
Hin1II	CATG	4 cut(s)	37, 145, 539, 645
Hin6I	GCGC	2 cut(s)	58, 549
HinP1I	GCGC	2 cut(s)	58, 549
HinfI	GANTC	3 cut(s)	183, 592, 604
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	2 cut(s)	328, 574
Hpy166II	GTNNAC	2 cut(s)	6, 235
Hpy188III	TCNNGA	1 cut(s)	444
Hpy8I	GTNNAC	2 cut(s)	6, 235
HpyAV	CCTTC	1 cut(s)	417
HpyCH4III	ACNGT	1 cut(s)	754
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	3 cut(s)	482, 529, 651
HpyF3I	CTNAG	2 cut(s)	571, 688
HpySE526I	ACGT	1 cut(s)	373
Hsp92II	CATG	4 cut(s)	37, 145, 539, 645
HspAI	GCGC	2 cut(s)	58, 549
Kzo9I	GATC	3 cut(s)	133, 531, 718
LguI	GCTCTTC	1 cut(s)	342
Lsp1109I	GCAGC	2 cut(s)	118, 258
MaeI	CTAG	3 cut(s)	65, 162, 596
MaeII	ACGT	1 cut(s)	373
MaeIII	GTNAC	1 cut(s)	679
MalI	GATC	3 cut(s)	135, 533, 720
MboI	GATC	3 cut(s)	133, 531, 718
MfeI	CAATTG	1 cut(s)	455
MflI	RGATCY	2 cut(s)	133, 531
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	5 cut(s)	326, 406, 455, 578, 617
MlyI	GAGTC	2 cut(s)	586, 598
MnlI	CCTC	8 cut(s)	130, 157, 166, 298, 301, 528, 595, 746
MseI	TTAA	1 cut(s)	744
MspI	CCGG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	455
Mva1269I	GAATGC	2 cut(s)	60, 551
NdeII	GATC	3 cut(s)	133, 531, 718
NlaIII	CATG	4 cut(s)	37, 145, 539, 645
NmuCI	GTSAC	1 cut(s)	679
NsbI	TGCGCA	1 cut(s)	550
PciSI	GCTCTTC	1 cut(s)	342
PctI	GAATGC	2 cut(s)	60, 551
PfeI	GAWTC	1 cut(s)	183
PflMI	CCANNNNNTGG	1 cut(s)	541
PkrI	GCNGC	2 cut(s)	108, 273
PleI	GAGTC	2 cut(s)	586, 598
PpsI	GAGTC	2 cut(s)	586, 598
PspPI	GGNCC	1 cut(s)	635
PsuI	RGATCY	2 cut(s)	133, 531
RsaI	GTAC	4 cut(s)	190, 234, 731, 756
RsaNI	GTAC	4 cut(s)	189, 233, 730, 755
SapI	GCTCTTC	1 cut(s)	342
SaqAI	TTAA	1 cut(s)	744
SatI	GCNGC	2 cut(s)	107, 272
Sau3AI	GATC	3 cut(s)	133, 531, 718
Sau96I	GGNCC	1 cut(s)	635
SchI	GAGTC	2 cut(s)	586, 598
SduI	GDGCHC	1 cut(s)	354
SetI	ASST	9 cut(s)	196, 273, 312, 376, 453, 467, 572, 587, 601
SgrAI	CRCCGGYG	1 cut(s)	54
SinI	GGWCC	1 cut(s)	635
Sse9I	AATT	5 cut(s)	326, 406, 455, 578, 617
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	3 cut(s)	65, 162, 596
StyI	CCWWGG	1 cut(s)	101
TaaI	ACNGT	1 cut(s)	754
TaiI	ACGT	1 cut(s)	376
TasI	AATT	5 cut(s)	326, 406, 455, 578, 617
TatI	WGTACW	3 cut(s)	232, 729, 754
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	744
Tru9I	TTAA	1 cut(s)	744
TscAI	CASTG	1 cut(s)	653
TseFI	GTSAC	1 cut(s)	679
TseI	GCWGC	2 cut(s)	106, 271
Tsp45I	GTSAC	1 cut(s)	679
TspDTI	ATGAA	1 cut(s)	384
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	1 cut(s)	653
Van91I	CCANNNNNTGG	1 cut(s)	541
VpaK11BI	GGWCC	1 cut(s)	635
XagI	CCTNNNNNAGG	1 cut(s)	160
XapI	RAATTY	3 cut(s)	406, 578, 617
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	3 cut(s)	65, 162, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.