Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0014743

Physical Location & Seq

Genomic Coordinates Reverse (-)

18299886 .. 18300883

Gene Structure 998 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g15810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTCCAACCGCGCCACCCACCGGCGCATGCTAGCAGCGACAGAGCCAAAACACTCCAAGCCCTCCACTTACCTAGATCCTCCTTCCCTGCCCGCTAAACCCTCTTCCACCTCCAACCCCACCTCAAGAGTCATCGCAAGTCAACGACCCCTCACTTCTCAGAGCCTCATTGACACTCGTTTGCAGGCCAAATCGATGTCGGCGTCCATGGATTCCTCCAAGTCTTCCCTCAAATCGAATCCTCAGCTCAAATCATTCGACCCCAGAATCGAAAAACAGAGCAAGAAAACAAAGGAATCAGAAAAATCTAGAAAACCCAATAAGGATGTCGTCGTCGTGGTGAAGAAGAAGGAAGCTCAAAAGGGCTTGGTGGATTTTGAGAAAGAGAAGGAGTTGGATAGCGGGAGAAGGCTGTCGGTTTCGTTCGCCGCAAGCGGCGGCGGAGGAAGGAGGAGATCCCTGTCTGAGCCGCAGGTGCAGTTGGCGGATGTGTTAGCAAGTAATGGGGTGAGAGTTGTTTCAGCTGATATGCCGCCGTTTATGCAGATCCATGCTGTGGAGTGTGCAAGAAAGACACATGATAGCCTGGAAAAGTTCACCTCCAAGACTCTTGCTTTGACTCTCAAGAAGGAATTTGATGGGGTATATGGGCCAGCATGGCACTGCATTGTAGGAACAAGTTTTGGGTCTTTTGTGACACACTCTGTAAGTGGGTTTCTGTATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008092 GO:0008150 GO:0009987 GO:0010970 GO:0015630 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

243

Amino Acids

26.56

Weight (kDa)

10.0

Isoelectric Point (pI)

55.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	171 - 242	8.3e-22	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014743)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15920 FvH4_5g15920 FvH4_5g15920
malus_domestica	MD06G1184500.v1.1 MD14G1190400.v1.1
prunus_persica	Prupe.5G183300_v2.0.a1 Prupe.5G183300_v2.0.a1
pyrus_communis	pycom06g16370 pycom14g15810
rosa_chinensis	RchiOBHm_Chr1g0349921 RchiOBHm_Chr7g0180131
rosa_laevigata	RLG00000005290
rosa_roxburghii	Rroxscaffold_3G00273100
rosa_rugosa	Rorug06G0430700
rosa_samantha	Rh7BG031200 Rh7CG033100
rosa_wichuraiana	Rw7G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	463
Acc36I	ACCTGC	1 cut(s)	463
AccB7I	CCANNNNNTGG	1 cut(s)	556
AccII	CGCG	1 cut(s)	12
AclWI	GGATC	3 cut(s)	71, 450, 541
AcsI	RAATTY	1 cut(s)	632
AcyI	GRCGYC	1 cut(s)	203
AfiI	CCNNNNNNNGG	2 cut(s)	21, 556
AjnI	CCWGG	1 cut(s)	585
AluBI	AGCT	3 cut(s)	247, 356, 524
AluI	AGCT	3 cut(s)	247, 356, 524
AlwI	GGATC	3 cut(s)	71, 450, 541
AoxI	GGCC	2 cut(s)	186, 650
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	632
ArsI	GACNNNNNNTTYG	2 cut(s)	598, 630
AspLEI	GCGC	2 cut(s)	14, 27
AspS9I	GGNCC	1 cut(s)	650
AsuHPI	GGTGA	3 cut(s)	352, 520, 589
AsuNHI	GCTAGC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	216
BbvCI	CCTCAGC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	1 cut(s)	632
BceAI	ACGGC	1 cut(s)	520
BciT130I	CCWGG	1 cut(s)	587
BfaI	CTAG	3 cut(s)	32, 74, 309
BfuAI	ACCTGC	1 cut(s)	463
BglI	GCCNNNNNGGC	1 cut(s)	658
BisI	GCNGC	6 cut(s)	36, 429, 436, 439, 470, 533
BlsI	GCNGC	6 cut(s)	37, 430, 437, 440, 471, 534
Bme1390I	CCNGG	1 cut(s)	587
BmgT120I	GGNCC	1 cut(s)	650
BmrFI	CCNGG	1 cut(s)	587
BmtI	GCTAGC	1 cut(s)	35
BpiI	GAAGAC	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	2 cut(s)	109, 608
Bsa29I	ATCGAT	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 556
Bse118I	RCCGGY	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	587
BseCI	ATCGAT	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	2 cut(s)	331, 493
BseLI	CCNNNNNNNGG	2 cut(s)	21, 556
BseMII	CTCAG	3 cut(s)	173, 257, 456
BseRI	GAGGAG	1 cut(s)	466
BseXI	GCAGC	1 cut(s)	47
BsgI	GTGCAG	1 cut(s)	497
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	2 cut(s)	188, 652
BshVI	ATCGAT	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	22
BslI	CCNNNNNNNGG	2 cut(s)	21, 556
BsnI	GGCC	2 cut(s)	188, 652
Bsp143I	GATC	3 cut(s)	76, 455, 546
Bsp19I	CCATGG	1 cut(s)	207
BspANI	GGCC	2 cut(s)	188, 652
BspCNI	CTCAG	3 cut(s)	172, 256, 457
BspDI	ATCGAT	1 cut(s)	194
BspFNI	CGCG	1 cut(s)	12
BspMI	ACCTGC	1 cut(s)	463
BspOI	GCTAGC	1 cut(s)	35
BspPI	GGATC	3 cut(s)	71, 450, 541
BsrFI	RCCGGY	1 cut(s)	21
BssAI	RCCGGY	1 cut(s)	21
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	3 cut(s)	76, 455, 546
BssNI	GRCGYC	1 cut(s)	203
BssT1I	CCWWGG	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	587
Bst6I	CTCTTC	1 cut(s)	109
BstACI	GRCGYC	1 cut(s)	203
BstC8I	GCNNGC	6 cut(s)	29, 33, 93, 186, 433, 654
BstDEI	CTNAG	3 cut(s)	159, 243, 465
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	2 cut(s)	331, 493
BstFNI	CGCG	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	14, 27
BstKTI	GATC	3 cut(s)	79, 458, 549
BstMBI	GATC	3 cut(s)	76, 455, 546
BstMWI	GCNNNNNNNGC	3 cut(s)	475, 541, 658
BstNI	CCWGG	1 cut(s)	587
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	585
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	47
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	3 cut(s)	76, 455, 546
BstYI	RGATCY	3 cut(s)	76, 455, 546
Bsu15I	ATCGAT	1 cut(s)	194
BsuRI	GGCC	2 cut(s)	188, 652
BsuTUI	ATCGAT	1 cut(s)	194
BtgI	CCRYGG	1 cut(s)	207
BtgZI	GCGATG	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	331, 493
BtsI	GCAGTG	1 cut(s)	661
BtsIMutI	CAGTG	1 cut(s)	661
BveI	ACCTGC	1 cut(s)	463
Cac8I	GCNNGC	6 cut(s)	29, 33, 93, 186, 433, 654
CfoI	GCGC	2 cut(s)	14, 27
Cfr10I	RCCGGY	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	650
ClaI	ATCGAT	1 cut(s)	194
CseI	GACGC	1 cut(s)	192
CviAII	CATG	5 cut(s)	28, 208, 551, 578, 657
DdeI	CTNAG	3 cut(s)	159, 243, 465
DpnI	GATC	3 cut(s)	78, 457, 548
DpnII	GATC	3 cut(s)	76, 455, 546
Eam1104I	CTCTTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	109
EciI	GGCGGA	2 cut(s)	456, 500
Eco130I	CCWWGG	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	585
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	5 cut(s)	31, 211, 554, 581, 660
FaiI	YATR	9 cut(s)	29, 209, 530, 542, 552, 579, 646, 648, 658
FatI	CATG	5 cut(s)	27, 207, 550, 577, 656
FauI	CCCGC	2 cut(s)	100, 395
Fnu4HI	GCNGC	6 cut(s)	36, 429, 436, 439, 470, 533
FokI	GGATG	2 cut(s)	338, 500
Fsp4HI	GCNGC	6 cut(s)	36, 429, 436, 439, 470, 533
FspBI	CTAG	3 cut(s)	32, 74, 309
GlaI	GCGC	2 cut(s)	13, 26
GluI	GCNGC	6 cut(s)	36, 429, 436, 439, 470, 533
HaeIII	GGCC	2 cut(s)	188, 652
HapII	CCGG	1 cut(s)	22
HgaI	GACGC	1 cut(s)	192
HhaI	GCGC	2 cut(s)	14, 27
Hin1I	GRCGYC	1 cut(s)	203
Hin1II	CATG	5 cut(s)	31, 211, 554, 581, 660
Hin6I	GCGC	2 cut(s)	12, 25
HinP1I	GCGC	2 cut(s)	12, 25
HincII	GTYRAC	1 cut(s)	143
HindII	GTYRAC	1 cut(s)	143
HinfI	GANTC	7 cut(s)	129, 212, 238, 267, 296, 607, 619
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	3 cut(s)	352, 520, 589
Hpy166II	GTNNAC	2 cut(s)	143, 597
Hpy188I	TCNGA	4 cut(s)	162, 301, 466, 728
Hpy188III	TCNNGA	3 cut(s)	126, 309, 625
Hpy8I	GTNNAC	2 cut(s)	143, 597
Hpy99I	CGWCG	2 cut(s)	335, 338
HpyAV	CCTTC	6 cut(s)	93, 343, 382, 402, 441, 622
HpyCH4V	TGCA	5 cut(s)	184, 478, 544, 566, 666
HpyF10VI	GCNNNNNNNGC	3 cut(s)	475, 541, 658
HpyF3I	CTNAG	3 cut(s)	159, 243, 465
Hsp92I	GRCGYC	1 cut(s)	203
Hsp92II	CATG	5 cut(s)	31, 211, 554, 581, 660
HspAI	GCGC	2 cut(s)	12, 25
Kzo9I	GATC	3 cut(s)	76, 455, 546
LpnPI	CCDG	9 cut(s)	35, 101, 170, 277, 458, 473, 572, 599, 666
Lsp1109I	GCAGC	1 cut(s)	47
MaeI	CTAG	3 cut(s)	32, 74, 309
MaeIII	GTNAC	1 cut(s)	694
MalI	GATC	3 cut(s)	78, 457, 548
MboI	GATC	3 cut(s)	76, 455, 546
MboII	GAAGA	4 cut(s)	96, 216, 355, 358
MflI	RGATCY	3 cut(s)	76, 455, 546
MluCI	AATT	1 cut(s)	632
MlyI	GAGTC	3 cut(s)	138, 601, 613
MmeI	TCCRAC	3 cut(s)	30, 138, 375
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	587
MvaI	CCWGG	1 cut(s)	587
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	3 cut(s)	475, 541, 658
NcoI	CCATGG	1 cut(s)	207
NdeII	GATC	3 cut(s)	76, 455, 546
NheI	GCTAGC	1 cut(s)	31
NlaIII	CATG	5 cut(s)	31, 211, 554, 581, 660
NmuCI	GTSAC	1 cut(s)	694
NspI	RCATGY	1 cut(s)	31
PaeI	GCATGC	1 cut(s)	31
PaqCI	CACCTGC	1 cut(s)	463
PcsI	WCGNNNNNNNCGW	1 cut(s)	200
PfeI	GAWTC	4 cut(s)	212, 238, 267, 296
PflMI	CCANNNNNTGG	1 cut(s)	556
PkrI	GCNGC	6 cut(s)	37, 430, 437, 440, 471, 534
PleI	GAGTC	3 cut(s)	137, 601, 613
PpsI	GAGTC	3 cut(s)	137, 601, 613
Psp6I	CCWGG	1 cut(s)	585
PspGI	CCWGG	1 cut(s)	585
PspPI	GGNCC	1 cut(s)	650
PsuI	RGATCY	3 cut(s)	76, 455, 546
PvuII	CAGCTG	1 cut(s)	524
SatI	GCNGC	6 cut(s)	36, 429, 436, 439, 470, 533
Sau3AI	GATC	3 cut(s)	76, 455, 546
Sau96I	GGNCC	1 cut(s)	650
SchI	GAGTC	3 cut(s)	138, 601, 613
ScrFI	CCNGG	1 cut(s)	587
SetI	ASST	8 cut(s)	75, 113, 125, 249, 358, 477, 526, 602
SgrAI	CRCCGGYG	1 cut(s)	21
SmlI	CTYRAG	2 cut(s)	124, 623
SmoI	CTYRAG	2 cut(s)	124, 623
SphI	GCATGC	1 cut(s)	31
Sse9I	AATT	1 cut(s)	632
SspMI	CTAG	3 cut(s)	32, 74, 309
StyD4I	CCNGG	1 cut(s)	585
StyI	CCWWGG	1 cut(s)	207
TaqI	TCGA	4 cut(s)	194, 236, 258, 270
TasI	AATT	1 cut(s)	632
TauI	GCSGC	5 cut(s)	431, 438, 441, 472, 535
TfiI	GAWTC	4 cut(s)	212, 238, 267, 296
TscAI	CASTG	1 cut(s)	668
TseFI	GTSAC	1 cut(s)	694
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	694
TspRI	CASTG	1 cut(s)	668
Van91I	CCANNNNNTGG	1 cut(s)	556
XapI	RAATTY	1 cut(s)	632
XbaI	TCTAGA	1 cut(s)	308
XceI	RCATGY	1 cut(s)	31
XspI	CTAG	3 cut(s)	32, 74, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.