Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0014743

Physical Location & Seq

Genomic Coordinates Reverse (-)

2273996 .. 2275131

Gene Structure 1136 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG033100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCTAACCGCACCACCCACCGGCGCATTCTAGCAACACCAGAGCCAGAGCCAGAACCAGAACCAGAACCACCAAGGCAGCAGACCAAACCCTCCACTCCTTTAGATCCCACCATGCCCTCTAAACCCTCTTCTAGGCTAAACCCAAATCACAGAATCCGTACAGCTCAAAGACCCAGTAGTCAAAACCCACTCCCAAGTTTTGTACACACCAACAATGTTGAGAAACAGAGTAAAGAGAAGCTGCCCAATAGAGAAGTGGATAAGAAGAAAGTTGAGGAGGTGGTGGTGAAGATGGAATTGATGGGTGTCAAAGAAGAAGAGCATGAAGAAAAAGAGTATGAAAGTAGGAGACTTTCTACTTCTTCTTCTTCTTCAAATTCTTTGGGTGGAAGAAGGAAGTCCTTTTGTGGGTCAGGACAGGTTCAATTGAATAGGTTGGCTGCTGTGTTTGCAAGCAATGGTGTGAAAGTGGTTTCAGTTGATATGCCTCCATTTATGCAGATCCATGCTGTGGAATGTGCAAGAAAGACTTGTGATAGCTTAGAAAAATTCACCTCCAAGACTCTTGCTTTGACTCTCAAAAAGGAATTTGATGGGGTATATGGACCAGCATGGCACTGCATTGTAGGAACAAGTTTTGGGTCTTTTGTGACACACTCAGTAAGTGGCTTTATGTATTTCTCAATGGATCAAAAGTTGTACATCCTCTTGTTTAAGACCACAGTACAAAGAGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008092 GO:0008150 GO:0009987 GO:0010970 GO:0015630 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

247

Amino Acids

27.79

Weight (kDa)

9.33

Isoelectric Point (pI)

54.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	156 - 241	2e-27	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014743)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15920 FvH4_5g15920 FvH4_5g15920
malus_domestica	MD06G1184500.v1.1 MD14G1190400.v1.1
prunus_persica	Prupe.5G183300_v2.0.a1 Prupe.5G183300_v2.0.a1
pyrus_communis	pycom06g16370 pycom14g15810
rosa_chinensis	RchiOBHm_Chr1g0349921 RchiOBHm_Chr7g0180131
rosa_laevigata	RLG00000005290
rosa_roxburghii	Rroxscaffold_3G00273100
rosa_rugosa	Rorug06G0430700
rosa_samantha	Rh7BG031200 Rh7CG033100
rosa_wichuraiana	Rw7G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	180
AccB7I	CCANNNNNTGG	1 cut(s)	514
AciI	CCGC	1 cut(s)	10
AclWI	GGATC	3 cut(s)	101, 499, 699
AcsI	RAATTY	3 cut(s)	379, 551, 590
AfaI	GTAC	4 cut(s)	163, 207, 704, 729
AfiI	CCNNNNNNNGG	4 cut(s)	21, 135, 411, 514
AgsI	TTSAA	3 cut(s)	378, 428, 433
AluBI	AGCT	3 cut(s)	167, 244, 543
AluI	AGCT	3 cut(s)	167, 244, 543
Alw26I	GTCTC	1 cut(s)	346
AlwI	GGATC	3 cut(s)	101, 499, 699
ApeKI	GCWGC	3 cut(s)	79, 244, 443
ApoI	RAATTY	3 cut(s)	379, 551, 590
ArsI	GACNNNNNNTTYG	2 cut(s)	556, 588
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	608
AsuHPI	GGTGA	2 cut(s)	301, 547
AvaII	GGWCC	1 cut(s)	608
BbvI	GCAGC	3 cut(s)	91, 231, 430
BccI	CCATC	3 cut(s)	289, 298, 590
BcoDI	GTCTC	1 cut(s)	346
BfaI	CTAG	2 cut(s)	32, 135
BisI	GCNGC	3 cut(s)	80, 245, 444
BlsI	GCNGC	3 cut(s)	81, 246, 445
Bme18I	GGWCC	1 cut(s)	608
BmgT120I	GGNCC	1 cut(s)	608
BmrI	ACTGGG	1 cut(s)	171
BmuI	ACTGGG	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	4 cut(s)	21, 135, 411, 514
Bse118I	RCCGGY	1 cut(s)	21
Bse1I	ACTGG	1 cut(s)	177
Bse3DI	GCAATG	1 cut(s)	466
BseDI	CCNNGG	1 cut(s)	74
BseGI	GGATG	1 cut(s)	705
BseLI	CCNNNNNNNGG	4 cut(s)	21, 135, 411, 514
BseMI	GCAATG	1 cut(s)	466
BseMII	CTCAG	1 cut(s)	675
BseNI	ACTGG	1 cut(s)	177
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	3 cut(s)	91, 231, 430
BsiSI	CCGG	1 cut(s)	22
BslI	CCNNNNNNNGG	4 cut(s)	21, 135, 411, 514
BsmAI	GTCTC	1 cut(s)	346
BsmI	GAATGC	1 cut(s)	27
Bsp1407I	TGTACA	2 cut(s)	205, 702
Bsp143I	GATC	3 cut(s)	106, 504, 691
BspACI	CCGC	1 cut(s)	10
BspCNI	CTCAG	1 cut(s)	674
BspPI	GGATC	3 cut(s)	101, 499, 699
BspQI	GCTCTTC	1 cut(s)	315
BsrDI	GCAATG	1 cut(s)	466
BsrFI	RCCGGY	1 cut(s)	21
BsrGI	TGTACA	2 cut(s)	205, 702
BsrI	ACTGG	1 cut(s)	177
BssAI	RCCGGY	1 cut(s)	21
BssECI	CCNNGG	1 cut(s)	74
BssMI	GATC	3 cut(s)	106, 504, 691
BssT1I	CCWWGG	1 cut(s)	74
Bst4CI	ACNGT	1 cut(s)	727
Bst6I	CTCTTC	2 cut(s)	136, 315
BstAUI	TGTACA	2 cut(s)	205, 702
BstC8I	GCNNGC	1 cut(s)	457
BstDEI	CTNAG	2 cut(s)	544, 661
BstENI	CCTNNNNNAGG	1 cut(s)	133
BstF5I	GGATG	1 cut(s)	705
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	3 cut(s)	109, 507, 694
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	3 cut(s)	106, 504, 691
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstV1I	GCAGC	3 cut(s)	91, 231, 430
BstX2I	RGATCY	2 cut(s)	106, 504
BstYI	RGATCY	2 cut(s)	106, 504
BtsCI	GGATG	1 cut(s)	705
BtsI	GCAGTG	1 cut(s)	619
BtsIMutI	CAGTG	1 cut(s)	619
Cac8I	GCNNGC	1 cut(s)	457
CfoI	GCGC	1 cut(s)	27
Cfr10I	RCCGGY	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	608
Csp6I	GTAC	4 cut(s)	162, 206, 703, 728
CviAII	CATG	4 cut(s)	115, 326, 509, 615
CviJI	RGCY	9 cut(s)	5, 46, 52, 139, 167, 244, 443, 543, 672
CviKI_1	RGCY	9 cut(s)	5, 46, 52, 139, 167, 244, 443, 543, 672
CviQI	GTAC	4 cut(s)	162, 206, 703, 728
DdeI	CTNAG	2 cut(s)	544, 661
DpnI	GATC	3 cut(s)	108, 506, 693
DpnII	GATC	3 cut(s)	106, 504, 691
DrdI	GACNNNNNNGTC	1 cut(s)	180
DseDI	GACNNNNNNGTC	1 cut(s)	180
Eam1104I	CTCTTC	2 cut(s)	136, 315
EarI	CTCTTC	2 cut(s)	136, 315
Eco130I	CCWWGG	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	608
EcoNI	CCTNNNNNAGG	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	4 cut(s)	118, 329, 512, 618
FalI	AAGNNNNNCTT	2 cut(s)	517, 549
FatI	CATG	4 cut(s)	114, 325, 508, 614
Fnu4HI	GCNGC	3 cut(s)	80, 245, 444
FokI	GGATG	1 cut(s)	692
Fsp4HI	GCNGC	3 cut(s)	80, 245, 444
FspBI	CTAG	2 cut(s)	32, 135
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	3 cut(s)	80, 245, 444
HapII	CCGG	1 cut(s)	22
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	4 cut(s)	118, 329, 512, 618
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HinfI	GANTC	3 cut(s)	156, 565, 577
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	2 cut(s)	301, 547
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188III	TCNNGA	1 cut(s)	417
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	1 cut(s)	390
HpyCH4III	ACNGT	1 cut(s)	727
HpyCH4V	TGCA	4 cut(s)	455, 502, 524, 624
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	2 cut(s)	544, 661
Hsp92II	CATG	4 cut(s)	118, 329, 512, 618
HspAI	GCGC	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	106, 504, 691
LguI	GCTCTTC	1 cut(s)	315
Lsp1109I	GCAGC	3 cut(s)	91, 231, 430
MaeI	CTAG	2 cut(s)	32, 135
MaeIII	GTNAC	1 cut(s)	652
MalI	GATC	3 cut(s)	108, 506, 693
MboI	GATC	3 cut(s)	106, 504, 691
MfeI	CAATTG	1 cut(s)	428
MflI	RGATCY	2 cut(s)	106, 504
MluCI	AATT	5 cut(s)	299, 379, 428, 551, 590
MlyI	GAGTC	2 cut(s)	559, 571
MnlI	CCTC	8 cut(s)	103, 130, 139, 271, 274, 501, 568, 719
MseI	TTAA	1 cut(s)	717
MspI	CCGG	1 cut(s)	22
MunI	CAATTG	1 cut(s)	428
Mva1269I	GAATGC	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	452
NdeII	GATC	3 cut(s)	106, 504, 691
NlaIII	CATG	4 cut(s)	118, 329, 512, 618
NmuCI	GTSAC	1 cut(s)	652
PciSI	GCTCTTC	1 cut(s)	315
PctI	GAATGC	1 cut(s)	27
PfeI	GAWTC	1 cut(s)	156
PflMI	CCANNNNNTGG	1 cut(s)	514
PkrI	GCNGC	3 cut(s)	81, 246, 445
PleI	GAGTC	2 cut(s)	559, 571
PpsI	GAGTC	2 cut(s)	559, 571
PspPI	GGNCC	1 cut(s)	608
PsuI	RGATCY	2 cut(s)	106, 504
RsaI	GTAC	4 cut(s)	163, 207, 704, 729
RsaNI	GTAC	4 cut(s)	162, 206, 703, 728
SapI	GCTCTTC	1 cut(s)	315
SaqAI	TTAA	1 cut(s)	717
SatI	GCNGC	3 cut(s)	80, 245, 444
Sau3AI	GATC	3 cut(s)	106, 504, 691
Sau96I	GGNCC	1 cut(s)	608
SchI	GAGTC	2 cut(s)	559, 571
SetI	ASST	7 cut(s)	169, 246, 285, 426, 440, 545, 560
SgrAI	CRCCGGYG	1 cut(s)	21
SinI	GGWCC	1 cut(s)	608
Sse9I	AATT	5 cut(s)	299, 379, 428, 551, 590
SsiI	CCGC	1 cut(s)	10
SspMI	CTAG	2 cut(s)	32, 135
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	727
TasI	AATT	5 cut(s)	299, 379, 428, 551, 590
TatI	WGTACW	3 cut(s)	205, 702, 727
TfiI	GAWTC	1 cut(s)	156
Tru1I	TTAA	1 cut(s)	717
Tru9I	TTAA	1 cut(s)	717
TscAI	CASTG	1 cut(s)	626
TseFI	GTSAC	1 cut(s)	652
TseI	GCWGC	3 cut(s)	79, 244, 443
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	2 cut(s)	342, 357
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	626
Van91I	CCANNNNNTGG	1 cut(s)	514
VpaK11BI	GGWCC	1 cut(s)	608
XagI	CCTNNNNNAGG	1 cut(s)	133
XapI	RAATTY	3 cut(s)	379, 551, 590
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XspI	CTAG	2 cut(s)	32, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.